| armenia | yerevan province | shigella dysenteriae | species | 0 | 1 |
| australia | queensland | shigella dysenteriae | species | 0 | 1 |
| australia | south australia | shigella dysenteriae | species | 0 | 1 |
| bangladesh | | shigella dysenteriae | species | 10 | 0 |
| bangladesh | chittagong division | shigella dysenteriae | species | 7 | 0 |
| bangladesh | dhaka division | shigella dysenteriae | species | 644 | 21 |
| bangladesh | dhaka division | shigella dysenteriae 1 | no rank | 0 | 2 |
| bangladesh | rangpur division | shigella dysenteriae | species | 3 | 0 |
| belarus | vitebsk region | shigella dysenteriae | species | 0 | 1 |
| brazil | amazonas | shigella dysenteriae | species | 0 | 1 |
| brazil | rondonia | shigella dysenteriae | species | 0 | 1 |
| brazil | sao paulo | shigella dysenteriae | species | 0 | 2 |
| burundi | | shigella dysenteriae | species | 8 | 0 |
| burundi | bujumbura mairie province | shigella dysenteriae | species | 0 | 1 |
| burundi | bujumbura rural province | shigella dysenteriae | species | 0 | 1 |
| canada | alberta | shigella dysenteriae | species | 0 | 2 |
| canada | british columbia | shigella dysenteriae | species | 0 | 1 |
| canada | quebec | shigella dysenteriae | species | 0 | 1 |
| central african republic | bangui | shigella dysenteriae | species | 0 | 1 |
| china | | shigella dysenteriae | species | 35 | 0 |
| china | beijing | shigella dysenteriae | species | 1 | 1 |
| china | gansu | shigella dysenteriae | species | 0 | 1 |
| china | guangdong | shigella dysenteriae | species | 1 | 0 |
| china | shandong | shigella dysenteriae | species | 0 | 1 |
| china | xinjiang | shigella dysenteriae | species | 0 | 1 |
| democratic republic of the congo | north kivu province | shigella dysenteriae | species | 0 | 5 |
| democratic republic of the congo | north kivu province | shigella dysenteriae 1 | no rank | 0 | 1 |
| democratic republic of the congo | south kivu province | shigella dysenteriae | species | 0 | 1 |
| democratic republic of the congo | south kivu province | shigella dysenteriae 1 | no rank | 0 | 1 |
| egypt | | shigella dysenteriae | species | 1 | 0 |
| el salvador | san salvador department | shigella dysenteriae | species | 0 | 2 |
| eritrea | maekel region | shigella dysenteriae | species | 0 | 1 |
| ethiopia | addis ababa | shigella dysenteriae | species | 1 | 1 |
| france | | shigella dysenteriae 4 | no rank | 1078 | 0 |
| france | centre region | shigella dysenteriae | species | 0 | 1 |
| georgia | | shigella dysenteriae 2a | no rank | 1 | 0 |
| germany | | shigella dysenteriae | species | 1 | 0 |
| ghana | greater accra region | shigella dysenteriae | species | 0 | 1 |
| guatemala | | shigella dysenteriae 1617 | no rank | 2 | 0 |
| guatemala | | shigella dysenteriae wrsd3 | no rank | 1558 | 0 |
| guatemala | | shigella dysenteriae wrsd5 | no rank | 1524 | 0 |
| guatemala | baja verapaz department | shigella dysenteriae | species | 0 | 1 |
| guatemala | guatemala department | shigella dysenteriae | species | 0 | 10 |
| guatemala | guatemala department | shigella dysenteriae 1 | no rank | 0 | 1 |
| guinea-bissau | bissau region | shigella dysenteriae | species | 0 | 1 |
| haiti | | shigella dysenteriae | species | 0 | 1 |
| hong kong | | shigella dysenteriae | species | 5 | 1 |
| hungary | | shigella dysenteriae | species | 6 | 0 |
| india | | shigella dysenteriae | species | 41 | 0 |
| india | | shigella dysenteriae 2a | no rank | 1 | 0 |
| india | | shigella dysenteriae sd1d | no rank | 294 | 0 |
| india | andaman and nicobar islands | shigella dysenteriae | species | 2 | 1 |
| india | andaman and nicobar islands | shigella dysenteriae 1 | no rank | 4 | 0 |
| india | andaman and nicobar islands | shigella dysenteriae 2a | no rank | 7 | 0 |
| india | andaman and nicobar islands | shigella dysenteriae 3 | no rank | 2 | 0 |
| india | andhra pradesh | shigella dysenteriae | species | 0 | 1 |
| india | chhattisgarh | shigella dysenteriae | species | 0 | 1 |
| india | goa | shigella dysenteriae | species | 1 | 0 |
| india | himachal pradesh | shigella dysenteriae | species | 0 | 1 |
| india | karnataka | shigella dysenteriae | species | 0 | 1 |
| india | maharashtra | shigella dysenteriae | species | 3 | 1 |
| india | tamil nadu | shigella dysenteriae | species | 0 | 1 |
| india | tripura | shigella dysenteriae | species | 0 | 1 |
| india | uttar pradesh | shigella dysenteriae | species | 0 | 3 |
| india | west bengal | shigella dysenteriae | species | 9 | 12 |
| india | west bengal | shigella dysenteriae 1 | no rank | 0 | 1 |
| indonesia | bali province | shigella dysenteriae | species | 0 | 3 |
| indonesia | jakarta | shigella dysenteriae | species | 0 | 4 |
| indonesia | north sumatra province | shigella dysenteriae | species | 0 | 1 |
| indonesia | south sulawesi province | shigella dysenteriae | species | 0 | 1 |
| indonesia | sumatera barat province | shigella dysenteriae | species | 0 | 2 |
| indonesia | west kalimantan province | shigella dysenteriae | species | 0 | 2 |
| iran | | shigella dysenteriae | species | 8 | 0 |
| iran | fars province | shigella dysenteriae | species | 0 | 1 |
| iran | kohgiluyeh and boyer-ahmad province | shigella dysenteriae | species | 0 | 1 |
| iran | tehran province | shigella dysenteriae | species | 5 | 1 |
| iraq | | shigella dysenteriae | species | 2 | 0 |
| ireland | | shigella dysenteriae | species | 2 | 0 |
| ireland | munster province | shigella dysenteriae | species | 1 | 0 |
| israel | southern district | shigella dysenteriae | species | 0 | 1 |
| italy | sicily autonomous region | shigella dysenteriae | species | 0 | 2 |
| japan | | shigella dysenteriae | species | 1 | 0 |
| japan | gunma prefecture | shigella dysenteriae | species | 0 | 1 |
| japan | osaka prefecture | shigella dysenteriae | species | 0 | 1 |
| japan | shiga prefecture | shigella dysenteriae | species | 0 | 3 |
| japan | tokyo prefecture | shigella dysenteriae | species | 0 | 1 |
| kenya | | shigella dysenteriae | species | 1 | 0 |
| kenya | | shigella dysenteriae s6554 | no rank | 550 | 0 |
| kenya | coast province | shigella dysenteriae | species | 0 | 1 |
| kenya | nyanza province | shigella dysenteriae | species | 0 | 1 |
| kuwait | | shigella dysenteriae | species | 0 | 1 |
| laos | viangchan province | shigella dysenteriae | species | 0 | 1 |
| laos | vientiane prefecture | shigella dysenteriae | species | 0 | 1 |
| libya | tripoli district | shigella dysenteriae | species | 0 | 1 |
| madagascar | analamanga region | shigella dysenteriae | species | 0 | 3 |
| malaysia | | shigella dysenteriae | species | 1 | 0 |
| maldives | | shigella dysenteriae | species | 0 | 8 |
| maldives | | shigella dysenteriae 1 | no rank | 0 | 1 |
| mexico | federal district | shigella dysenteriae | species | 0 | 3 |
| mexico | jalisco | shigella dysenteriae | species | 0 | 1 |
| mexico | yucatan | shigella dysenteriae | species | 0 | 1 |
| myanmar | yangon division | shigella dysenteriae | species | 0 | 3 |
| nepal | | shigella dysenteriae | species | 3 | 0 |
| nepal | central development region | shigella dysenteriae | species | 0 | 2 |
| new zealand | | shigella dysenteriae | species | 2 | 0 |
| nigeria | cross river | shigella dysenteriae | species | 0 | 1 |
| nigeria | lagos | shigella dysenteriae | species | 0 | 3 |
| nigeria | niger | shigella dysenteriae | species | 0 | 1 |
| nigeria | ogun | shigella dysenteriae | species | 0 | 1 |
| nigeria | oyo | shigella dysenteriae | species | 0 | 2 |
| pakistan | | shigella dysenteriae | species | 7 | 0 |
| pakistan | sindh province | shigella dysenteriae | species | 0 | 3 |
| pakistan | sindh province | shigella dysenteriae 1 | no rank | 0 | 1 |
| peru | lima region | shigella dysenteriae | species | 0 | 1 |
| peru | lima region | shigella dysenteriae | species | 0 | 1 |
| poland | | shigella dysenteriae | species | 1 | 0 |
| poland | mazovia province | shigella dysenteriae | species | 0 | 1 |
| poland | pomorskie province | shigella dysenteriae | species | 0 | 1 |
| russia | krasnodar krai | shigella dysenteriae | species | 0 | 1 |
| russia | moscow city | shigella dysenteriae | species | 0 | 1 |
| russia | moscow oblast | shigella dysenteriae | species | 0 | 1 |
| rwanda | kigali province | shigella dysenteriae | species | 0 | 1 |
| rwanda | northern province | shigella dysenteriae | species | 0 | 1 |
| saudi arabia | | shigella dysenteriae | species | 6 | 0 |
| saudi arabia | jizan region | shigella dysenteriae | species | 0 | 1 |
| senegal | dakar region | shigella dysenteriae | species | 0 | 7 |
| senegal | dakar region | shigella dysenteriae 1 | no rank | 0 | 1 |
| senegal | saint-louis region | shigella dysenteriae | species | 0 | 1 |
| sierra leone | eastern province | shigella dysenteriae | species | 0 | 2 |
| singapore | | shigella dysenteriae | species | 0 | 1 |
| somalia | banaadir region | shigella dysenteriae | species | 0 | 1 |
| south africa | | shigella dysenteriae | species | 5 | 0 |
| south africa | gauteng province | shigella dysenteriae | species | 3 | 0 |
| south africa | kwazulu-natal province | shigella dysenteriae | species | 0 | 7 |
| south korea | seoul city | shigella dysenteriae | species | 1 | 0 |
| sri lanka | southern province | shigella dysenteriae | species | 0 | 1 |
| sri lanka | western province | shigella dysenteriae | species | 0 | 1 |
| taiwan | | shigella dysenteriae | species | 0 | 3 |
| taiwan | | shigella dysenteriae 1 | no rank | 0 | 1 |
| tanzania | mwanza region | shigella dysenteriae | species | 0 | 1 |
| thailand | bangkok | shigella dysenteriae | species | 0 | 1 |
| thailand | bangkok | shigella dysenteriae 1 | no rank | 0 | 1 |
| thailand | nakhon nayok province | shigella dysenteriae | species | 0 | 1 |
| thailand | nakhon si thammarat province | shigella dysenteriae | species | 0 | 1 |
| thailand | phra nakhon si ayutthaya province | shigella dysenteriae | species | 0 | 1 |
| thailand | phra nakhon si ayutthaya province | shigella dysenteriae 1 | no rank | 0 | 1 |
| thailand | ubon ratchathani province | shigella dysenteriae | species | 0 | 1 |
| uganda | central region | shigella dysenteriae | species | 0 | 1 |
| united arab emirates | | shigella dysenteriae | species | 1 | 0 |
| united kingdom | | shigella dysenteriae | species | 4 | 0 |
| united kingdom | england | shigella dysenteriae | species | 89 | 4 |
| united kingdom | northern ireland | shigella dysenteriae | species | 0 | 1 |
| united kingdom | wales | shigella dysenteriae | species | 0 | 4 |
| united states | | shigella dysenteriae | species | 37 | 0 |
| united states | alabama | shigella dysenteriae | species | 0 | 1 |
| united states | arizona | shigella dysenteriae | species | 4 | 4 |
| united states | california | shigella dysenteriae | species | 0 | 4 |
| united states | california | shigella dysenteriae 155-74 | no rank | 113 | 0 |
| united states | colorado | shigella dysenteriae | species | 0 | 2 |
| united states | district of columbia | shigella dysenteriae | species | 0 | 2 |
| united states | florida | shigella dysenteriae | species | 0 | 1 |
| united states | georgia | shigella dysenteriae | species | 2022 | 2 |
| united states | illinois | shigella dysenteriae | species | 0 | 1 |
| united states | iowa | shigella dysenteriae | species | 0 | 1 |
| united states | kansas | shigella dysenteriae | species | 0 | 1 |
| united states | maryland | shigella dysenteriae | species | 1033 | 2 |
| united states | massachusetts | shigella dysenteriae | species | 0 | 1 |
| united states | michigan | shigella dysenteriae | species | 338 | 2 |
| united states | montana | shigella dysenteriae | species | 0 | 1 |
| united states | new york | shigella dysenteriae | species | 0 | 1 |
| united states | oregon | shigella dysenteriae | species | 1676 | 1 |
| united states | south carolina | shigella dysenteriae | species | 0 | 3 |
| united states | texas | shigella dysenteriae | species | 1 | 2 |
| united states | texas | shigella dysenteriae 1 | no rank | 0 | 1 |
| united states | virginia | shigella dysenteriae | species | 1 | 0 |
| united states | washington | shigella dysenteriae | species | 1403 | 0 |
| united states | wisconsin | shigella dysenteriae | species | 908 | 0 |
| united states minor outlying islands | | shigella dysenteriae | species | 0 | 1 |
| uruguay | montevideo department | shigella dysenteriae | species | 0 | 1 |
| zimbabwe | bulawayo province | shigella dysenteriae | species | 0 | 2 |
| zimbabwe | harare province | shigella dysenteriae | species | 0 | 4 |
| zimbabwe | mashonaland east province | shigella dysenteriae | species | 0 | 1 |
| zimbabwe | masvingo province | shigella dysenteriae | species | 0 | 1 |