| 1 | escherichia coli | 524 | 562 | species | yes | yes | yes | yes |
| 2 | human immunodeficiency virus 1 | 410 | 11676 | species | yes | yes | yes | yes |
| 3 | human immunodeficiency virus 2 | 399 | 11709 | species | yes | yes | yes | yes |
| 4 | hepatitis c virus | 289 | 11103 | species | yes | yes | yes | yes |
| 5 | staphylococcus aureus | 271 | 1280 | species | yes | yes | yes | yes |
| 6 | human herpesvirus 4 | 257 | 10376 | species | yes | yes | yes | yes |
| 7 | hepatitis b virus | 246 | 10407 | species | yes | yes | yes | yes |
| 8 | helicobacter pylori | 246 | 210 | species | yes | yes | yes | yes |
| 9 | pseudomonas aeruginosa | 243 | 287 | species | yes | yes | yes | yes |
| 10 | mycobacterium tuberculosis | 238 | 1773 | species | yes | yes | yes | yes |
| 11 | human papillomavirus | 235 | 10566 | species | yes | yes | yes | yes |
| 12 | bacillus subtilis | 219 | 1423 | species | yes | yes | yes | yes |
| 13 | listeria monocytogenes | 207 | 1639 | species | yes | yes | yes | yes |
| 14 | streptococcus pneumoniae | 199 | 1313 | species | yes | yes | yes | yes |
| 15 | candida albicans | 181 | 5476 | species | yes | yes | yes | yes |
| 16 | human herpesvirus 1 | 171 | 10298 | species | yes | yes | yes | yes |
| 17 | respiratory syncytial virus | 164 | 12814 | species | yes | yes | yes | yes |
| 18 | human herpesvirus 5 | 159 | 10359 | species | yes | yes | yes | yes |
| 19 | toxoplasma gondii | 148 | 5811 | species | yes | yes | yes | yes |
| 20 | lymphocytic choriomeningitis mammarenavirus | 148 | 11623 | species | yes | yes | yes | yes |
| 21 | haemophilus influenzae | 148 | 727 | species | yes | yes | yes | yes |
| 22 | klebsiella pneumoniae | 146 | 573 | species | yes | yes | yes | yes |
| 23 | vibrio cholerae | 145 | 666 | species | yes | yes | yes | yes |
| 24 | borreliella burgdorferi | 144 | 139 | species | yes | yes | yes | yes |
| 25 | chlamydia pneumoniae | 143 | 83558 | species | yes | yes | yes | yes |
| 26 | shigella flexneri | 142 | 623 | species | yes | yes | yes | yes |
| 27 | human herpesvirus 8 | 140 | 37296 | species | yes | yes | yes | yes |
| 28 | escherichia coli o157:h7 | 138 | 83334 | no rank | yes | yes | yes | yes |
| 29 | human t-lymphotropic virus 1 | 137 | 11908 | no rank | yes | yes | yes | yes |
| 30 | neisseria gonorrhoeae | 136 | 485 | species | yes | yes | yes | yes |
| 31 | influenza a virus | 135 | 11320 | species | yes | yes | yes | yes |
| 32 | legionella pneumophila | 133 | 446 | species | yes | yes | yes | yes |
| 33 | mycobacterium bovis | 132 | 1765 | species | yes | yes | yes | yes |
| 34 | enterococcus faecalis | 132 | 1351 | species | yes | yes | yes | yes |
| 35 | neisseria meningitidis | 130 | 487 | species | yes | yes | yes | yes |
| 36 | campylobacter jejuni | 130 | 197 | species | yes | yes | yes | yes |
| 37 | chlamydia trachomatis | 129 | 813 | species | yes | yes | yes | yes |
| 38 | clostridioides difficile | 127 | 1496 | species | yes | yes | yes | yes |
| 39 | cryptococcus neoformans | 126 | 5207 | species | yes | yes | yes | yes |
| 40 | yersinia enterocolitica | 126 | 630 | species | yes | yes | yes | yes |
| 41 | mouse mammary tumor virus | 125 | 11757 | species | yes | no | yes | yes |
| 42 | bordetella pertussis | 122 | 520 | species | yes | yes | yes | yes |
| 43 | bacillus anthracis | 122 | 1392 | species | yes | yes | yes | yes |
| 44 | measles virus | 119 | 11234 | species | yes | yes | yes | yes |
| 45 | enterovirus c | 118 | 138950 | species | yes | yes | yes | yes |
| 46 | enterococcus faecium | 116 | 1352 | species | yes | yes | yes | yes |
| 47 | staphylococcus epidermidis | 114 | 1282 | species | yes | yes | yes | yes |
| 48 | porphyromonas gingivalis | 113 | 837 | species | yes | yes | yes | yes |
| 49 | streptococcus pyogenes | 113 | 1314 | species | yes | yes | yes | yes |
| 50 | human herpesvirus 3 | 113 | 10335 | species | yes | yes | yes | yes |
| 51 | bacillus cereus | 111 | 1396 | species | yes | yes | yes | yes |
| 52 | aspergillus niger | 110 | 5061 | species | yes | yes | yes | yes |
| 53 | burkholderia cepacia | 107 | 292 | species | yes | yes | yes | yes |
| 54 | salmonella enterica | 107 | 28901 | species | yes | yes | yes | yes |
| 55 | clostridium botulinum | 106 | 1491 | species | yes | yes | yes | yes |
| 56 | yersinia pestis | 105 | 632 | species | yes | yes | yes | yes |
| 57 | encephalomyocarditis virus | 105 | 12104 | no rank | yes | yes | yes | yes |
| 58 | streptococcus mutans | 104 | 1309 | species | yes | yes | yes | yes |
| 59 | clostridium perfringens | 101 | 1502 | species | yes | yes | yes | yes |
| 60 | aggregatibacter actinomycetemcomitans | 101 | 714 | species | yes | yes | yes | yes |
| 61 | serratia marcescens | 100 | 615 | species | yes | yes | yes | yes |
| 62 | yersinia pseudotuberculosis | 99 | 633 | species | yes | yes | yes | yes |
| 63 | leishmania donovani | 98 | 5661 | species | yes | yes | yes | yes |
| 64 | entamoeba histolytica | 98 | 5759 | species | yes | yes | yes | yes |
| 65 | bacteroides fragilis | 97 | 817 | species | yes | yes | yes | yes |
| 66 | fusarium verticillioides | 97 | 117187 | species | yes | yes | yes | yes |
| 67 | west nile virus | 97 | 11082 | species | yes | yes | yes | yes |
| 68 | rabies virus | 96 | 11292 | species | yes | yes | yes | yes |
| 69 | human herpesvirus 2 | 96 | 10310 | species | yes | yes | yes | yes |
| 70 | mycobacterium avium complex | 95 | 37162 | subspecies | yes | yes | yes | yes |
| 71 | hepatovirus a | 95 | 12092 | species | yes | yes | yes | yes |
| 72 | human herpesvirus 6 | 94 | 10368 | species | yes | yes | yes | yes |
| 73 | fusarium oxysporum | 93 | 5507 | species | yes | yes | yes | yes |
| 74 | mycoplasma pneumoniae | 93 | 2104 | species | yes | yes | yes | yes |
| 75 | cryptosporidium parvum | 92 | 5807 | species | yes | yes | yes | yes |
| 76 | enterobacter cloacae | 90 | 550 | species | yes | yes | yes | yes |
| 77 | aeromonas hydrophila | 89 | 644 | species | yes | yes | yes | yes |
| 78 | acinetobacter baumannii | 88 | 470 | species | yes | yes | yes | yes |
| 79 | moraxella catarrhalis | 87 | 480 | species | yes | yes | yes | yes |
| 80 | treponema pallidum | 87 | 160 | species | yes | yes | yes | yes |
| 81 | [candida] glabrata | 87 | 5478 | species | yes | yes | yes | yes |
| 82 | trichomonas vaginalis | 87 | 5722 | species | yes | yes | yes | yes |
| 83 | salmonella enterica subsp. enterica serovar enteritidis | 87 | 149539 | no rank | yes | yes | yes | yes |
| 84 | rhizopus oryzae | 86 | 64495 | species | yes | yes | yes | yes |
| 85 | human parvovirus b19 | 81 | 10798 | species | yes | yes | yes | yes |
| 86 | stenotrophomonas maltophilia | 80 | 40324 | species | yes | yes | yes | yes |
| 87 | proteus mirabilis | 80 | 584 | species | yes | yes | yes | yes |
| 88 | shigella dysenteriae | 80 | 622 | species | yes | yes | yes | yes |
| 89 | mycoplasma genitalium | 78 | 2097 | species | yes | yes | yes | yes |
| 90 | bacillus licheniformis | 78 | 1402 | species | yes | yes | yes | yes |
| 91 | trichinella spiralis | 78 | 6334 | species | yes | yes | yes | yes |
| 92 | salmonella enterica subsp. enterica serovar typhimurium | 77 | 90371 | no rank | yes | yes | yes | yes |
| 93 | bartonella henselae | 77 | 38323 | species | yes | yes | yes | yes |
| 94 | candida tropicalis | 76 | 5482 | species | yes | yes | yes | yes |
| 95 | pseudomonas stutzeri | 76 | 316 | species | yes | yes | yes | yes |
| 96 | brucella abortus | 76 | 235 | species | yes | yes | yes | yes |
| 97 | [enterobacter] aerogenes | 75 | 548 | species | yes | yes | yes | yes |
| 98 | francisella tularensis | 74 | 263 | species | yes | yes | yes | yes |
| 99 | vibrio parahaemolyticus | 74 | 670 | species | yes | yes | yes | yes |
| 100 | streptococcus sanguinis | 74 | 1305 | species | yes | yes | yes | yes |
| 101 | norwalk virus | 73 | 11983 | species | yes | yes | yes | yes |
| 102 | cowpox virus | 71 | 10243 | species | yes | yes | yes | yes |
| 103 | citrobacter freundii | 70 | 546 | species | yes | yes | yes | yes |
| 104 | fasciola hepatica | 68 | 6192 | species | yes | yes | yes | yes |
| 105 | coxiella burnetii | 67 | 777 | species | yes | yes | yes | yes |
| 106 | campylobacter coli | 65 | 195 | species | yes | yes | yes | yes |
| 107 | pantoea agglomerans | 63 | 549 | species | yes | yes | | yes |
| 108 | gallid herpesvirus 2 | 63 | 10390 | species | yes | yes | | no |
| 109 | chlamydia psittaci | 63 | 83554 | species | yes | yes | | yes |
| 110 | calliphora vicina | 62 | 7373 | species | yes | yes | | no |
| 111 | streptococcus agalactiae | 62 | 1311 | species | yes | yes | yes | yes |
| 112 | anaplasma phagocytophilum | 62 | 948 | species | yes | yes | | yes |
| 113 | echinococcus granulosus | 61 | 6210 | species | yes | yes | yes | yes |
| 114 | equid herpesvirus 1 | 60 | 10326 | species | yes | yes | | no |
| 115 | infectious bursal disease virus | 60 | 10995 | species | yes | yes | | no |
| 116 | transmissible gastroenteritis virus | 60 | 11149 | no rank | yes | yes | | yes |
| 117 | lelystad virus | 59 | 11049 | no rank | yes | yes | | no |
| 118 | feline calicivirus | 59 | 11978 | species | yes | yes | | no |
| 119 | myxoma virus | 59 | 10273 | species | yes | yes | | no |
| 120 | actinobacillus pleuropneumoniae | 59 | 715 | species | yes | yes | | yes |
| 121 | encephalitozoon cuniculi | 58 | 6035 | species | yes | yes | | yes |
| 122 | rotavirus a | 58 | 28875 | species | yes | yes | | yes |
| 123 | trichostrongylus colubriformis | 57 | 6319 | species | yes | yes | | yes |
| 124 | fowlpox virus | 57 | 10261 | species | yes | yes | | no |
| 125 | porcine parvovirus | 57 | 10796 | species | yes | yes | | no |
| 126 | campylobacter fetus | 57 | 196 | species | yes | yes | | yes |
| 127 | leishmania infantum | 57 | 5671 | species | yes | yes | | yes |
| 128 | schistosoma haematobium | 56 | 6185 | species | yes | yes | | yes |
| 129 | bordetella bronchiseptica | 55 | 518 | species | yes | yes | yes | yes |