| algeria | algiers province | clostridioides difficile | species | 0 | 1 |
| argentina | buenos aires city | clostridioides difficile | species | 0 | 3 |
| argentina | buenos aires province | clostridioides difficile | species | 0 | 3 |
| argentina | mendoza province | clostridioides difficile | species | 0 | 1 |
| australia | | clostridioides difficile | species | 960 | 0 |
| australia | new south wales | clostridioides difficile | species | 554 | 2 |
| australia | new south wales | clostridioides difficile 5.3 | no rank | 56 | 0 |
| australia | northern territory | clostridioides difficile | species | 1 | 2 |
| australia | queensland | clostridioides difficile | species | 0 | 5 |
| australia | south australia | clostridioides difficile | species | 6 | 1 |
| australia | tasmania | clostridioides difficile | species | 0 | 1 |
| australia | victoria | clostridioides difficile | species | 6588 | 7 |
| australia | western australia | clostridioides difficile | species | 0 | 13 |
| austria | | clostridioides difficile | species | 9 | 0 |
| austria | burgenland | clostridioides difficile | species | 0 | 1 |
| austria | lower austria | clostridioides difficile | species | 1 | 1 |
| austria | vienna | clostridioides difficile | species | 13 | 4 |
| bangladesh | dhaka division | clostridioides difficile | species | 0 | 1 |
| belgium | | clostridioides difficile | species | 286 | 0 |
| belgium | | clostridioides difficile cf5 | no rank | 1 | 0 |
| belgium | bruxelles-capitale | clostridioides difficile | species | 33 | 0 |
| belgium | flemish region | clostridioides difficile | species | 252 | 0 |
| benin | littoral department | clostridioides difficile | species | 0 | 1 |
| brazil | | clostridioides difficile | species | 336 | 0 |
| brazil | ceara | clostridioides difficile | species | 104 | 0 |
| brazil | mato grosso | clostridioides difficile | species | 0 | 1 |
| brazil | mato grosso do sul | clostridioides difficile | species | 0 | 1 |
| brazil | parana | clostridioides difficile | species | 5221 | 0 |
| brazil | rio de janeiro | clostridioides difficile | species | 3171 | 6 |
| brazil | sao paulo | clostridioides difficile | species | 20438 | 2 |
| bulgaria | | clostridioides difficile | species | 1 | 0 |
| cambodia | | clostridioides difficile | species | 7 | 0 |
| canada | | clostridioides difficile | species | 563 | 0 |
| canada | | clostridioides difficile 6041 | no rank | 350 | 0 |
| canada | | clostridioides difficile 6042 | no rank | 633 | 0 |
| canada | | clostridioides difficile 6057 | no rank | 597 | 0 |
| canada | | clostridioides difficile cd26a54_r | no rank | 10 | 0 |
| canada | | clostridioides difficile cd26a54_s | no rank | 14 | 0 |
| canada | alberta | clostridioides difficile | species | 0 | 3 |
| canada | british columbia | clostridioides difficile | species | 0 | 6 |
| canada | manitoba | clostridioides difficile | species | 0 | 5 |
| canada | newfoundland and labrador | clostridioides difficile qcd-97b34 | no rank | 65 | 0 |
| canada | nova scotia | clostridioides difficile | species | 0 | 3 |
| canada | nunavut | clostridioides difficile | species | 0 | 1 |
| canada | ontario | clostridioides difficile | species | 8 | 38 |
| canada | ontario | clostridioides difficile qcd-37x79 | no rank | 49 | 0 |
| canada | quebec | clostridioides difficile | species | 0 | 65 |
| canada | quebec | clostridioides difficile qcd-23m63 | no rank | 65 | 0 |
| canada | quebec | clostridioides difficile qcd-32g58 | no rank | 19 | 0 |
| canada | quebec | clostridioides difficile qcd-63q42 | no rank | 64 | 0 |
| canada | quebec | clostridioides difficile qcd-66c26 | no rank | 35 | 0 |
| canada | saskatchewan | clostridioides difficile | species | 0 | 1 |
| chile | | clostridioides difficile | species | 1 | 0 |
| chile | santiago metropolitan region | clostridioides difficile | species | 0 | 2 |
| china | | clostridioides difficile | species | 494 | 0 |
| china | beijing | clostridioides difficile | species | 4441 | 4 |
| china | beijing | clostridioides difficile bj08 | no rank | 1 | 0 |
| china | guangdong | clostridioides difficile | species | 2617 | 0 |
| china | hainan | clostridioides difficile | species | 1 | 0 |
| china | hebei | clostridioides difficile | species | 21 | 0 |
| china | henan | clostridioides difficile | species | 6 | 0 |
| china | hubei | clostridioides difficile | species | 10 | 0 |
| china | hunan | clostridioides difficile | species | 979 | 1 |
| china | inner mongolia | clostridioides difficile | species | 825 | 0 |
| china | jiangsu | clostridioides difficile | species | 45 | 0 |
| china | liaoning | clostridioides difficile | species | 4 | 0 |
| china | shaanxi | clostridioides difficile | species | 125 | 0 |
| china | shandong | clostridioides difficile | species | 175 | 0 |
| china | shanghai shi | clostridioides difficile | species | 650 | 5 |
| china | sichuan | clostridioides difficile | species | 4036 | 0 |
| china | yunnan | clostridioides difficile | species | 4 | 0 |
| china | zhejiang | clostridioides difficile | species | 1171 | 1 |
| colombia | | clostridioides difficile | species | 83 | 0 |
| costa rica | san jose province | clostridioides difficile | species | 1268 | 0 |
| cyprus | | clostridioides difficile | species | 1 | 0 |
| czech republic | | clostridioides difficile | species | 11 | 0 |
| czech republic | prague city | clostridioides difficile | species | 0 | 1 |
| denmark | | clostridioides difficile | species | 1 | 0 |
| denmark | capital region of denmark | clostridioides difficile | species | 0 | 3 |
| denmark | region zealand | clostridioides difficile | species | 0 | 2 |
| egypt | | clostridioides difficile | species | 4 | 0 |
| egypt | asyut governorate | clostridioides difficile | species | 0 | 1 |
| egypt | cairo governorate | clostridioides difficile | species | 0 | 1 |
| finland | | clostridioides difficile | species | 1 | 0 |
| finland | pirkanmaa region | clostridioides difficile | species | 0 | 1 |
| france | | clostridioides difficile | species | 55 | 0 |
| france | | clostridioides difficile atcc 9689 = dsm 1296 | no rank | 70 | 0 |
| france | aquitaine region | clostridioides difficile | species | 0 | 1 |
| france | bourgogne region | clostridioides difficile | species | 0 | 1 |
| france | centre region | clostridioides difficile | species | 0 | 1 |
| france | champagne-ardenne region | clostridioides difficile cip 107932 | no rank | 198 | 0 |
| france | ile-de-france region | clostridioides difficile | species | 534 | 6 |
| france | midi-pyrenees region | clostridioides difficile | species | 0 | 1 |
| germany | | clostridioides difficile | species | 2576 | 0 |
| germany | bavaria | clostridioides difficile | species | 0 | 1 |
| germany | hesse | clostridioides difficile | species | 0 | 5 |
| germany | lower saxony | clostridioides difficile | species | 23 | 1 |
| germany | north rhine-westphalia | clostridioides difficile | species | 0 | 1 |
| germany | saarland | clostridioides difficile | species | 0 | 3 |
| germany | saxony | clostridioides difficile | species | 3 | 2 |
| germany | saxony-anhalt | clostridioides difficile | species | 3 | 0 |
| germany | schleswig-holstein | clostridioides difficile | species | 0 | 1 |
| germany | thuringen | clostridioides difficile | species | 1 | 1 |
| greece | | clostridioides difficile | species | 10 | 0 |
| greece | crete region | clostridioides difficile | species | 0 | 2 |
| honduras | | clostridioides difficile | species | 3 | 0 |
| hong kong | | clostridioides difficile | species | 1954 | 9 |
| hungary | | clostridioides difficile | species | 16 | 0 |
| hungary | budapest | clostridioides difficile | species | 0 | 1 |
| hungary | csongrad county | clostridioides difficile | species | 0 | 2 |
| india | | clostridioides difficile | species | 108 | 0 |
| india | assam | clostridioides difficile | species | 0 | 1 |
| india | uttar pradesh | clostridioides difficile | species | 1 | 0 |
| india | west bengal | clostridioides difficile | species | 0 | 1 |
| indonesia | | clostridioides difficile | species | 10 | 0 |
| indonesia | jakarta | clostridioides difficile | species | 0 | 1 |
| iran | | clostridioides difficile | species | 503 | 0 |
| iran | isfahan province | clostridioides difficile | species | 0 | 3 |
| iran | tehran province | clostridioides difficile | species | 0 | 2 |
| iraq | saladin governorate | clostridioides difficile | species | 0 | 1 |
| ireland | | clostridioides difficile | species | 56 | 0 |
| ireland | | clostridioides difficile m68 | no rank | 2 | 0 |
| ireland | leinster province | clostridioides difficile | species | 0 | 1 |
| israel | central district | clostridioides difficile | species | 0 | 1 |
| israel | tel aviv district | clostridioides difficile | species | 0 | 1 |
| italy | | clostridioides difficile | species | 74 | 0 |
| italy | liguria region | clostridioides difficile | species | 0 | 1 |
| italy | piemonte region | clostridioides difficile | species | 0 | 1 |
| italy | tuscany region | clostridioides difficile | species | 90 | 0 |
| japan | | clostridioides difficile | species | 125240 | 0 |
| japan | aichi prefecture | clostridioides difficile | species | 8 | 1 |
| japan | tokyo prefecture | clostridioides difficile | species | 305 | 2 |
| kenya | | clostridioides difficile | species | 8 | 0 |
| kenya | nairobi province | clostridioides difficile | species | 1254 | 1 |
| kuwait | | clostridioides difficile | species | 0 | 9 |
| laos | | clostridioides difficile | species | 2 | 0 |
| malaysia | | clostridioides difficile | species | 17 | 0 |
| maldives | | clostridioides difficile | species | 0 | 1 |
| mexico | | clostridioides difficile | species | 1 | 0 |
| mexico | federal district | clostridioides difficile | species | 0 | 1 |
| netherlands | | clostridioides difficile | species | 22 | 0 |
| netherlands | gelderland province | clostridioides difficile | species | 3 | 0 |
| netherlands | south holland province | clostridioides difficile | species | 0 | 2 |
| netherlands | utrecht province | clostridioides difficile | species | 0 | 1 |
| new caledonia | | clostridioides difficile | species | 0 | 1 |
| new zealand | auckland | clostridioides difficile | species | 0 | 5 |
| new zealand | canterbury | clostridioides difficile | species | 9 | 0 |
| nigeria | anambra | clostridioides difficile | species | 0 | 2 |
| nigeria | enugu | clostridioides difficile | species | 0 | 1 |
| norway | more og romsdal county | clostridioides difficile | species | 0 | 1 |
| peru | lima region | clostridioides difficile | species | 0 | 2 |
| peru | lima region | clostridioides difficile | species | 0 | 2 |
| poland | | clostridioides difficile | species | 98 | 0 |
| poland | mazovia province | clostridioides difficile | species | 0 | 5 |
| poland | silesia province | clostridioides difficile | species | 0 | 1 |
| portugal | | clostridioides difficile | species | 775 | 0 |
| puerto rico | | clostridioides difficile | species | 0 | 1 |
| qatar | | clostridioides difficile | species | 0 | 2 |
| romania | | clostridioides difficile | species | 8 | 0 |
| romania | bucharest county | clostridioides difficile | species | 0 | 1 |
| saudi arabia | | clostridioides difficile | species | 20 | 0 |
| singapore | | clostridioides difficile | species | 6 | 8 |
| slovakia | | clostridioides difficile | species | 2 | 0 |
| slovenia | | clostridioides difficile | species | 31 | 0 |
| slovenia | city municipality of maribor | clostridioides difficile | species | 36 | 0 |
| south africa | the western cape province | clostridioides difficile | species | 0 | 1 |
| south korea | | clostridioides difficile | species | 2 | 0 |
| south korea | gwangju city | clostridioides difficile | species | 39 | 0 |
| spain | | clostridioides difficile | species | 1308 | 0 |
| spain | aragon | clostridioides difficile | species | 1025 | 1 |
| spain | asturias | clostridioides difficile | species | 0 | 1 |
| spain | balearic islands | clostridioides difficile | species | 0 | 1 |
| spain | galicia | clostridioides difficile | species | 0 | 1 |
| spain | madrid | clostridioides difficile | species | 0 | 5 |
| sweden | | clostridioides difficile | species | 12214 | 0 |
| sweden | kalmar | clostridioides difficile | species | 0 | 1 |
| sweden | stockholm | clostridioides difficile | species | 0 | 6 |
| sweden | uppsala | clostridioides difficile | species | 0 | 3 |
| switzerland | | clostridioides difficile | species | 42 | 0 |
| switzerland | | clostridioides difficile 630 | no rank | 4 | 0 |
| switzerland | basel-stadt region | clostridioides difficile | species | 0 | 1 |
| switzerland | geneva region | clostridioides difficile | species | 0 | 1 |
| switzerland | ticino region | clostridioides difficile | species | 0 | 1 |
| switzerland | vaud region | clostridioides difficile | species | 0 | 1 |
| switzerland | zurich region | clostridioides difficile | species | 0 | 1 |
| taiwan | | clostridioides difficile | species | 1209 | 26 |
| thailand | | clostridioides difficile | species | 172 | 0 |
| thailand | bangkok | clostridioides difficile | species | 68 | 5 |
| thailand | phra nakhon si ayutthaya province | clostridioides difficile | species | 0 | 3 |
| turkey | | clostridioides difficile | species | 12 | 0 |
| turkey | ankara province | clostridioides difficile | species | 0 | 1 |
| turkey | istanbul province | clostridioides difficile | species | 0 | 1 |
| united kingdom | | clostridioides difficile | species | 53916 | 0 |
| united kingdom | | clostridioides difficile m120 | no rank | 3 | 0 |
| united kingdom | | clostridioides difficile r20291 | no rank | 5 | 0 |
| united kingdom | england | clostridioides difficile | species | 988 | 130 |
| united kingdom | northern ireland | clostridioides difficile | species | 0 | 12 |
| united kingdom | scotland | clostridioides difficile | species | 96 | 16 |
| united kingdom | wales | clostridioides difficile | species | 323 | 26 |
| united states | | clostridioides difficile | species | 54009 | 0 |
| united states | | clostridioides difficile 2007855 | no rank | 1 | 0 |
| united states | | clostridioides difficile 655 | no rank | 419 | 0 |
| united states | | clostridioides difficile 824 | no rank | 249 | 0 |
| united states | | clostridioides difficile bi1 | no rank | 3 | 0 |
| united states | | clostridioides difficile bi9 | no rank | 1 | 0 |
| united states | | clostridioides difficile cd104 | no rank | 113 | 0 |
| united states | | clostridioides difficile cd109 | no rank | 297 | 0 |
| united states | | clostridioides difficile cd111 | no rank | 485 | 0 |
| united states | | clostridioides difficile cd113 | no rank | 259 | 0 |
| united states | | clostridioides difficile cd127 | no rank | 1975 | 0 |
| united states | | clostridioides difficile cd129 | no rank | 1928 | 0 |
| united states | | clostridioides difficile cd13 | no rank | 109 | 0 |
| united states | | clostridioides difficile cd131 | no rank | 273 | 0 |
| united states | | clostridioides difficile cd132 | no rank | 397 | 0 |
| united states | | clostridioides difficile cd133 | no rank | 251 | 0 |
| united states | | clostridioides difficile cd144 | no rank | 117 | 0 |
| united states | | clostridioides difficile cd159 | no rank | 585 | 0 |
| united states | | clostridioides difficile cd160 | no rank | 233 | 0 |
| united states | | clostridioides difficile cd165 | no rank | 203 | 0 |
| united states | | clostridioides difficile cd166 | no rank | 117 | 0 |
| united states | | clostridioides difficile cd169 | no rank | 107 | 0 |
| united states | | clostridioides difficile cd17 | no rank | 387 | 0 |
| united states | | clostridioides difficile cd170 | no rank | 419 | 0 |
| united states | | clostridioides difficile cd175 | no rank | 1379 | 0 |
| united states | | clostridioides difficile cd178 | no rank | 247 | 0 |
| united states | | clostridioides difficile cd18 | no rank | 93 | 0 |
| united states | | clostridioides difficile cd181 | no rank | 197 | 0 |
| united states | | clostridioides difficile cd196 | no rank | 1002 | 0 |
| united states | | clostridioides difficile cd200 | no rank | 441 | 0 |
| united states | | clostridioides difficile cd201 | no rank | 115 | 0 |
| united states | | clostridioides difficile cd206 | no rank | 195 | 0 |
| united states | | clostridioides difficile cd21 | no rank | 323 | 0 |
| united states | | clostridioides difficile cd211 | no rank | 379 | 0 |
| united states | | clostridioides difficile cd212 | no rank | 77 | 0 |
| united states | | clostridioides difficile cd22 | no rank | 339 | 0 |
| united states | | clostridioides difficile cd3 | no rank | 693 | 0 |
| united states | | clostridioides difficile cd34 | no rank | 101 | 0 |
| united states | | clostridioides difficile cd37 | no rank | 492 | 0 |
| united states | | clostridioides difficile cd38 | no rank | 249 | 0 |
| united states | | clostridioides difficile cd39 | no rank | 349 | 0 |
| united states | | clostridioides difficile cd40 | no rank | 199 | 0 |
| united states | | clostridioides difficile cd41 | no rank | 73 | 0 |
| united states | | clostridioides difficile cd42 | no rank | 495 | 0 |
| united states | | clostridioides difficile cd43 | no rank | 217 | 0 |
| united states | | clostridioides difficile cd44 | no rank | 499 | 0 |
| united states | | clostridioides difficile cd45 | no rank | 357 | 0 |
| united states | | clostridioides difficile cd46 | no rank | 85 | 0 |
| united states | | clostridioides difficile cd47 | no rank | 263 | 0 |
| united states | | clostridioides difficile cd49 | no rank | 223 | 0 |
| united states | | clostridioides difficile cd51 | no rank | 297 | 0 |
| united states | | clostridioides difficile cd68 | no rank | 287 | 0 |
| united states | | clostridioides difficile cd69 | no rank | 123 | 0 |
| united states | | clostridioides difficile cd70 | no rank | 373 | 0 |
| united states | | clostridioides difficile cd8 | no rank | 565 | 0 |
| united states | | clostridioides difficile cd86 | no rank | 317 | 0 |
| united states | | clostridioides difficile cd88 | no rank | 265 | 0 |
| united states | | clostridioides difficile cd9 | no rank | 179 | 0 |
| united states | | clostridioides difficile cd90 | no rank | 251 | 0 |
| united states | | clostridioides difficile cd92 | no rank | 830 | 0 |
| united states | | clostridioides difficile da00044 | no rank | 291 | 0 |
| united states | | clostridioides difficile da00062 | no rank | 321 | 0 |
| united states | | clostridioides difficile da00065 | no rank | 303 | 0 |
| united states | | clostridioides difficile da00114 | no rank | 335 | 0 |
| united states | | clostridioides difficile da00126 | no rank | 187 | 0 |
| united states | | clostridioides difficile da00128 | no rank | 195 | 0 |
| united states | | clostridioides difficile da00129 | no rank | 151 | 0 |
| united states | | clostridioides difficile da00130 | no rank | 285 | 0 |
| united states | | clostridioides difficile da00131 | no rank | 285 | 0 |
| united states | | clostridioides difficile da00132 | no rank | 161 | 0 |
| united states | | clostridioides difficile da00134 | no rank | 201 | 0 |
| united states | | clostridioides difficile da00141 | no rank | 109 | 0 |
| united states | | clostridioides difficile da00142 | no rank | 388 | 0 |
| united states | | clostridioides difficile da00145 | no rank | 269 | 0 |
| united states | | clostridioides difficile da00149 | no rank | 195 | 0 |
| united states | | clostridioides difficile da00154 | no rank | 209 | 0 |
| united states | | clostridioides difficile da00160 | no rank | 201 | 0 |
| united states | | clostridioides difficile da00165 | no rank | 16 | 0 |
| united states | | clostridioides difficile da00167 | no rank | 275 | 0 |
| united states | | clostridioides difficile da00174 | no rank | 263 | 0 |
| united states | | clostridioides difficile da00183 | no rank | 233 | 0 |
| united states | | clostridioides difficile da00189 | no rank | 227 | 0 |
| united states | | clostridioides difficile da00191 | no rank | 179 | 0 |
| united states | | clostridioides difficile da00193 | no rank | 125 | 0 |
| united states | | clostridioides difficile da00195 | no rank | 195 | 0 |
| united states | | clostridioides difficile da00196 | no rank | 49 | 0 |
| united states | | clostridioides difficile da00197 | no rank | 41 | 0 |
| united states | | clostridioides difficile da00203 | no rank | 33 | 0 |
| united states | | clostridioides difficile da00210 | no rank | 241 | 0 |
| united states | | clostridioides difficile da00211 | no rank | 185 | 0 |
| united states | | clostridioides difficile da00212 | no rank | 183 | 0 |
| united states | | clostridioides difficile da00215 | no rank | 225 | 0 |
| united states | | clostridioides difficile da00216 | no rank | 955 | 0 |
| united states | | clostridioides difficile da00232 | no rank | 251 | 0 |
| united states | | clostridioides difficile da00238 | no rank | 193 | 0 |
| united states | | clostridioides difficile da00244 | no rank | 35 | 0 |
| united states | | clostridioides difficile da00245 | no rank | 677 | 0 |
| united states | | clostridioides difficile da00246 | no rank | 119 | 0 |
| united states | | clostridioides difficile da00256 | no rank | 1063 | 0 |
| united states | | clostridioides difficile da00261 | no rank | 35 | 0 |
| united states | | clostridioides difficile da00273 | no rank | 547 | 0 |
| united states | | clostridioides difficile da00275 | no rank | 177 | 0 |
| united states | | clostridioides difficile da00305 | no rank | 1350 | 0 |
| united states | | clostridioides difficile da00306 | no rank | 141 | 0 |
| united states | | clostridioides difficile da00307 | no rank | 443 | 0 |
| united states | | clostridioides difficile da00310 | no rank | 1235 | 0 |
| united states | | clostridioides difficile da00313 | no rank | 228 | 0 |
| united states | | clostridioides difficile f152 | no rank | 40 | 0 |
| united states | | clostridioides difficile f200 | no rank | 103 | 0 |
| united states | | clostridioides difficile f249 | no rank | 227 | 0 |
| united states | | clostridioides difficile f253 | no rank | 879 | 0 |
| united states | | clostridioides difficile f314 | no rank | 113 | 0 |
| united states | | clostridioides difficile f480 | no rank | 69 | 0 |
| united states | | clostridioides difficile f501 | no rank | 266 | 0 |
| united states | | clostridioides difficile f525 | no rank | 91 | 0 |
| united states | | clostridioides difficile f548 | no rank | 39 | 0 |
| united states | | clostridioides difficile f601 | no rank | 85 | 0 |
| united states | | clostridioides difficile f665 | no rank | 103 | 0 |
| united states | | clostridioides difficile p1 | no rank | 325 | 0 |
| united states | | clostridioides difficile p15 | no rank | 77 | 0 |
| united states | | clostridioides difficile p19 | no rank | 132 | 0 |
| united states | | clostridioides difficile p2 | no rank | 409 | 0 |
| united states | | clostridioides difficile p20 | no rank | 131 | 0 |
| united states | | clostridioides difficile p21 | no rank | 111 | 0 |
| united states | | clostridioides difficile p24 | no rank | 117 | 0 |
| united states | | clostridioides difficile p25 | no rank | 49 | 0 |
| united states | | clostridioides difficile p28 | no rank | 167 | 0 |
| united states | | clostridioides difficile p3 | no rank | 343 | 0 |
| united states | | clostridioides difficile p30 | no rank | 110 | 0 |
| united states | | clostridioides difficile p32 | no rank | 90 | 0 |
| united states | | clostridioides difficile p33 | no rank | 119 | 0 |
| united states | | clostridioides difficile p36 | no rank | 85 | 0 |
| united states | | clostridioides difficile p38 | no rank | 136 | 0 |
| united states | | clostridioides difficile p41 | no rank | 129 | 0 |
| united states | | clostridioides difficile p42 | no rank | 111 | 0 |
| united states | | clostridioides difficile p46 | no rank | 125 | 0 |
| united states | | clostridioides difficile p50 | no rank | 63 | 0 |
| united states | | clostridioides difficile p51 | no rank | 114 | 0 |
| united states | | clostridioides difficile p59 | no rank | 138 | 0 |
| united states | | clostridioides difficile p6 | no rank | 339 | 0 |
| united states | | clostridioides difficile p61 | no rank | 113 | 0 |
| united states | | clostridioides difficile p64 | no rank | 149 | 0 |
| united states | | clostridioides difficile p69 | no rank | 103 | 0 |
| united states | | clostridioides difficile p71 | no rank | 109 | 0 |
| united states | | clostridioides difficile p72 | no rank | 93 | 0 |
| united states | | clostridioides difficile p74 | no rank | 85 | 0 |
| united states | | clostridioides difficile p78 | no rank | 125 | 0 |
| united states | | clostridioides difficile p8 | no rank | 413 | 0 |
| united states | | clostridioides difficile y10 | no rank | 79 | 0 |
| united states | | clostridioides difficile y155 | no rank | 469 | 0 |
| united states | | clostridioides difficile y165 | no rank | 739 | 0 |
| united states | | clostridioides difficile y171 | no rank | 577 | 0 |
| united states | | clostridioides difficile y184 | no rank | 1420 | 0 |
| united states | | clostridioides difficile y202 | no rank | 685 | 0 |
| united states | | clostridioides difficile y21 | no rank | 455 | 0 |
| united states | | clostridioides difficile y215 | no rank | 195 | 0 |
| united states | | clostridioides difficile y231 | no rank | 89 | 0 |
| united states | | clostridioides difficile y247 | no rank | 93 | 0 |
| united states | | clostridioides difficile y266 | no rank | 385 | 0 |
| united states | | clostridioides difficile y270 | no rank | 111 | 0 |
| united states | | clostridioides difficile y307 | no rank | 779 | 0 |
| united states | | clostridioides difficile y312 | no rank | 325 | 0 |
| united states | | clostridioides difficile y343 | no rank | 103 | 0 |
| united states | | clostridioides difficile y358 | no rank | 179 | 0 |
| united states | | clostridioides difficile y381 | no rank | 125 | 0 |
| united states | | clostridioides difficile y384 | no rank | 802 | 0 |
| united states | | clostridioides difficile y401 | no rank | 415 | 0 |
| united states | | clostridioides difficile y41 | no rank | 83 | 0 |
| united states | alabama | clostridioides difficile | species | 0 | 1 |
| united states | arizona | clostridioides difficile | species | 7343 | 3 |
| united states | california | clostridioides difficile | species | 158 | 17 |
| united states | colorado | clostridioides difficile | species | 0 | 3 |
| united states | connecticut | clostridioides difficile | species | 102 | 6 |
| united states | district of columbia | clostridioides difficile | species | 0 | 3 |
| united states | florida | clostridioides difficile | species | 253 | 2 |
| united states | georgia | clostridioides difficile | species | 1 | 1 |
| united states | illinois | clostridioides difficile | species | 70201 | 5 |
| united states | indiana | clostridioides difficile | species | 0 | 1 |
| united states | iowa | clostridioides difficile | species | 0 | 3 |
| united states | kansas | clostridioides difficile | species | 0 | 1 |
| united states | kentucky | clostridioides difficile | species | 2 | 3 |
| united states | louisiana | clostridioides difficile | species | 0 | 1 |
| united states | maine | clostridioides difficile | species | 5 | 1 |
| united states | maryland | clostridioides difficile | species | 13 | 7 |
| united states | massachusetts | clostridioides difficile | species | 1513 | 15 |
| united states | michigan | clostridioides difficile | species | 235 | 9 |
| united states | michigan | clostridioides difficile cd149 | no rank | 167 | 0 |
| united states | minnesota | clostridioides difficile | species | 58 | 11 |
| united states | minnesota | clostridioides difficile qcd-76w55 | no rank | 70 | 0 |
| united states | mississippi | clostridioides difficile | species | 0 | 1 |
| united states | missouri | clostridioides difficile | species | 0 | 10 |
| united states | montana | clostridioides difficile | species | 0 | 1 |
| united states | nevada | clostridioides difficile | species | 0 | 1 |
| united states | new hampshire | clostridioides difficile | species | 0 | 1 |
| united states | new jersey | clostridioides difficile | species | 1 | 8 |
| united states | new york | clostridioides difficile | species | 336 | 20 |
| united states | north carolina | clostridioides difficile | species | 0 | 9 |
| united states | ohio | clostridioides difficile | species | 29 | 19 |
| united states | oregon | clostridioides difficile | species | 0 | 3 |
| united states | pennsylvania | clostridioides difficile | species | 878 | 20 |
| united states | rhode island | clostridioides difficile | species | 0 | 3 |
| united states | south carolina | clostridioides difficile | species | 0 | 3 |
| united states | tennessee | clostridioides difficile | species | 0 | 2 |
| united states | texas | clostridioides difficile | species | 677 | 15 |
| united states | vermont | clostridioides difficile | species | 0 | 1 |
| united states | virginia | clostridioides difficile | species | 16 | 11 |
| united states | washington | clostridioides difficile | species | 0 | 2 |
| united states | west virginia | clostridioides difficile | species | 0 | 2 |
| united states | wisconsin | clostridioides difficile | species | 0 | 3 |
| united states minor outlying islands | | clostridioides difficile | species | 0 | 2 |
| vietnam | ha noi city | clostridioides difficile | species | 3 | 0 |
| zambia | lusaka province | clostridioides difficile | species | 0 | 1 |
| zimbabwe | harare province | clostridioides difficile | species | 0 | 1 |