| argentina | | bordetella pertussis | species | 19494 | 0 |
| argentina | buenos aires city | bordetella pertussis | species | 0 | 2 |
| argentina | buenos aires province | bordetella pertussis | species | 0 | 2 |
| argentina | santa fe province | bordetella pertussis | species | 0 | 1 |
| australia | | bordetella pertussis | species | 53030 | 0 |
| australia | new south wales | bordetella pertussis | species | 0 | 11 |
| australia | queensland | bordetella pertussis | species | 0 | 3 |
| australia | south australia | bordetella pertussis | species | 0 | 2 |
| australia | victoria | bordetella pertussis | species | 0 | 3 |
| australia | western australia | bordetella pertussis | species | 554 | 5 |
| austria | | bordetella pertussis | species | 3 | 0 |
| austria | tyrol | bordetella pertussis | species | 0 | 1 |
| austria | upper austria | bordetella pertussis | species | 41 | 0 |
| austria | vienna | bordetella pertussis | species | 0 | 1 |
| belarus | | bordetella pertussis | species | 7 | 0 |
| belgium | bruxelles-capitale | bordetella pertussis | species | 0 | 2 |
| belgium | flemish region | bordetella pertussis | species | 0 | 3 |
| belgium | walloon region | bordetella pertussis | species | 0 | 1 |
| brazil | | bordetella pertussis | species | 5 | 0 |
| brazil | federal district | bordetella pertussis | species | 0 | 1 |
| brazil | para | bordetella pertussis | species | 582 | 0 |
| brazil | pernambuco | bordetella pertussis | species | 313 | 0 |
| brazil | rio de janeiro | bordetella pertussis | species | 297 | 2 |
| brazil | rio grande do sul | bordetella pertussis | species | 287 | 0 |
| brazil | sao paulo | bordetella pertussis | species | 0 | 1 |
| canada | | bordetella pertussis | species | 22366 | 0 |
| canada | alberta | bordetella pertussis | species | 0 | 8 |
| canada | manitoba | bordetella pertussis | species | 0 | 1 |
| canada | nova scotia | bordetella pertussis | species | 0 | 2 |
| canada | nunavut | bordetella pertussis | species | 0 | 1 |
| canada | ontario | bordetella pertussis | species | 0 | 12 |
| canada | quebec | bordetella pertussis | species | 0 | 4 |
| chile | santiago metropolitan region | bordetella pertussis | species | 0 | 1 |
| china | | bordetella pertussis | species | 5348 | 0 |
| china | | bordetella pertussis cs | no rank | 1 | 0 |
| china | beijing | bordetella pertussis | species | 1 | 3 |
| china | chongqing | bordetella pertussis | species | 0 | 1 |
| china | guangdong | bordetella pertussis | species | 624 | 0 |
| china | hebei | bordetella pertussis | species | 0 | 1 |
| china | ningxia | bordetella pertussis | species | 0 | 1 |
| china | shanghai shi | bordetella pertussis | species | 0 | 1 |
| china | sichuan | bordetella pertussis | species | 0 | 1 |
| china | tianjin shi | bordetella pertussis | species | 0 | 1 |
| china | yunnan | bordetella pertussis | species | 0 | 1 |
| colombia | vichada department | bordetella pertussis | species | 0 | 1 |
| czech republic | | bordetella pertussis | species | 14 | 0 |
| czech republic | prague city | bordetella pertussis | species | 0 | 1 |
| denmark | | bordetella pertussis | species | 10974 | 0 |
| ethiopia | amhara region | bordetella pertussis | species | 0 | 1 |
| finland | | bordetella pertussis | species | 26541 | 0 |
| france | | bordetella pertussis | species | 16209 | 0 |
| france | centre region | bordetella pertussis | species | 0 | 1 |
| france | ile-de-france region | bordetella pertussis | species | 0 | 4 |
| gabon | moyen-ogooue province | bordetella pertussis | species | 0 | 1 |
| germany | baden-wuerttemberg | bordetella pertussis | species | 0 | 1 |
| germany | bavaria | bordetella pertussis | species | 0 | 1 |
| germany | berlin | bordetella pertussis | species | 0 | 1 |
| germany | lower saxony | bordetella pertussis | species | 3 | 0 |
| germany | rhineland-palatinate | bordetella pertussis | species | 0 | 1 |
| germany | saarland | bordetella pertussis | species | 0 | 1 |
| greece | attica region | bordetella pertussis | species | 0 | 1 |
| guatemala | | bordetella pertussis | species | 4 | 0 |
| haiti | | bordetella pertussis | species | 1 | 0 |
| hong kong | | bordetella pertussis | species | 6677 | 1 |
| india | | bordetella pertussis | species | 531 | 0 |
| india | chandigarh | bordetella pertussis | species | 0 | 1 |
| india | kerala | bordetella pertussis | species | 1 | 0 |
| india | national capital territory of delhi | bordetella pertussis | species | 2476 | 0 |
| iran | hamadan province | bordetella pertussis | species | 0 | 1 |
| iran | mazandaran province | bordetella pertussis | species | 0 | 1 |
| iran | tehran province | bordetella pertussis | species | 0 | 2 |
| ireland | | bordetella pertussis | species | 1 | 0 |
| israel | northern district | bordetella pertussis | species | 0 | 1 |
| israel | southern district | bordetella pertussis | species | 0 | 1 |
| italy | | bordetella pertussis | species | 21248 | 0 |
| italy | sicily autonomous region | bordetella pertussis | species | 0 | 1 |
| japan | | bordetella pertussis | species | 19442 | 0 |
| japan | | bordetella pertussis tohama i | no rank | 5 | 0 |
| japan | akita prefecture | bordetella pertussis | species | 6 | 0 |
| japan | chiba prefecture | bordetella pertussis | species | 6 | 1 |
| japan | fukui prefecture | bordetella pertussis | species | 0 | 1 |
| japan | fukuoka prefecture | bordetella pertussis | species | 1 | 4 |
| japan | gunma prefecture | bordetella pertussis | species | 6 | 0 |
| japan | kanagawa prefecture | bordetella pertussis | species | 1 | 0 |
| japan | miyagi ken prefecture | bordetella pertussis | species | 6 | 0 |
| japan | oita prefecture | bordetella pertussis | species | 2 | 0 |
| japan | okayama prefecture | bordetella pertussis | species | 0 | 1 |
| japan | osaka prefecture | bordetella pertussis | species | 1 | 0 |
| japan | tokyo prefecture | bordetella pertussis | species | 1 | 1 |
| japan | yamaguchi prefecture | bordetella pertussis | species | 0 | 2 |
| kenya | | bordetella pertussis | species | 15351 | 0 |
| lithuania | vilnius municipality | bordetella pertussis | species | 0 | 1 |
| maldives | | bordetella pertussis | species | 0 | 1 |
| mexico | | bordetella pertussis | species | 2520 | 0 |
| mexico | federal district | bordetella pertussis | species | 0 | 4 |
| mexico | nuevo leon | bordetella pertussis | species | 0 | 1 |
| mexico | veracruz-llave | bordetella pertussis | species | 0 | 1 |
| netherlands | | bordetella pertussis | species | 31536 | 0 |
| new zealand | | bordetella pertussis | species | 8 | 0 |
| new zealand | canterbury | bordetella pertussis | species | 5 | 0 |
| new zealand | nelson | bordetella pertussis | species | 9 | 0 |
| new zealand | northland | bordetella pertussis | species | 2 | 0 |
| new zealand | taranaki | bordetella pertussis | species | 1 | 0 |
| new zealand | waikato | bordetella pertussis | species | 3 | 0 |
| new zealand | wellington | bordetella pertussis | species | 0 | 1 |
| niger | niamey region | bordetella pertussis | species | 0 | 1 |
| nigeria | | bordetella pertussis | species | 1 | 0 |
| nigeria | ogun | bordetella pertussis | species | 0 | 1 |
| norway | | bordetella pertussis | species | 1 | 0 |
| norway | more og romsdal county | bordetella pertussis | species | 0 | 1 |
| pakistan | islamabad capital territory | bordetella pertussis | species | 0 | 1 |
| pakistan | sindh province | bordetella pertussis | species | 0 | 1 |
| panama | panama province | bordetella pertussis | species | 0 | 1 |
| peru | cajamarca region | bordetella pertussis | species | 0 | 1 |
| peru | lima region | bordetella pertussis | species | 0 | 1 |
| poland | | bordetella pertussis | species | 9905 | 0 |
| poland | lodz province | bordetella pertussis | species | 0 | 1 |
| poland | mazovia province | bordetella pertussis | species | 0 | 1 |
| portugal | braga district | bordetella pertussis | species | 0 | 1 |
| portugal | braganca district | bordetella pertussis | species | 0 | 1 |
| portugal | viana do castelo district | bordetella pertussis | species | 0 | 1 |
| romania | bucharest county | bordetella pertussis | species | 0 | 1 |
| russia | | bordetella pertussis | species | 3591 | 0 |
| russia | khabarovsk krai | bordetella pertussis | species | 0 | 1 |
| russia | leningrad oblast | bordetella pertussis | species | 0 | 1 |
| russia | moscow city | bordetella pertussis | species | 0 | 8 |
| russia | moscow oblast | bordetella pertussis | species | 0 | 8 |
| russia | saint petersburg | bordetella pertussis | species | 0 | 4 |
| saint helena | | bordetella pertussis | species | 0 | 1 |
| saudi arabia | | bordetella pertussis | species | 4 | 0 |
| senegal | dakar region | bordetella pertussis | species | 0 | 1 |
| singapore | | bordetella pertussis | species | 0 | 2 |
| south africa | the western cape province | bordetella pertussis | species | 0 | 3 |
| south korea | busan city | bordetella pertussis | species | 1 | 0 |
| spain | andalusia | bordetella pertussis | species | 0 | 1 |
| spain | catalonia | bordetella pertussis | species | 0 | 4 |
| spain | madrid | bordetella pertussis | species | 0 | 1 |
| spain | valencia | bordetella pertussis | species | 0 | 2 |
| sweden | | bordetella pertussis | species | 26247 | 0 |
| sweden | stockholm | bordetella pertussis | species | 0 | 2 |
| switzerland | geneva region | bordetella pertussis | species | 0 | 1 |
| switzerland | schwyz region | bordetella pertussis | species | 0 | 1 |
| taiwan | | bordetella pertussis | species | 37417 | 10 |
| tanzania | kilimanjaro region | bordetella pertussis | species | 0 | 1 |
| thailand | | bordetella pertussis | species | 2 | 0 |
| tunisia | tunis governorate | bordetella pertussis | species | 0 | 1 |
| turkey | ankara province | bordetella pertussis | species | 0 | 1 |
| turkey | antalya province | bordetella pertussis | species | 0 | 2 |
| turkey | diyarbakir province | bordetella pertussis | species | 0 | 2 |
| turkey | edirne province | bordetella pertussis | species | 0 | 1 |
| turkey | isparta province | bordetella pertussis | species | 0 | 1 |
| turkey | istanbul province | bordetella pertussis | species | 0 | 1 |
| turkey | izmir province | bordetella pertussis | species | 0 | 1 |
| turkey | kirikkale province | bordetella pertussis | species | 0 | 1 |
| turkey | samsun province | bordetella pertussis | species | 0 | 3 |
| u.s. virgin islands | | bordetella pertussis | species | 0 | 1 |
| united kingdom | | bordetella pertussis | species | 31443 | 0 |
| united kingdom | england | bordetella pertussis | species | 4 | 24 |
| united kingdom | northern ireland | bordetella pertussis | species | 0 | 1 |
| united kingdom | scotland | bordetella pertussis | species | 0 | 6 |
| united kingdom | wales | bordetella pertussis | species | 0 | 14 |
| united states | | bordetella pertussis | species | 51090 | 0 |
| united states | | bordetella pertussis 2250905 | no rank | 572 | 0 |
| united states | | bordetella pertussis 2356847 | no rank | 360 | 0 |
| united states | | bordetella pertussis 2371640 | no rank | 388 | 0 |
| united states | | bordetella pertussis b200 | no rank | 416 | 0 |
| united states | | bordetella pertussis chla-11 | no rank | 124 | 0 |
| united states | | bordetella pertussis chla-13 | no rank | 192 | 0 |
| united states | | bordetella pertussis chla-15 | no rank | 278 | 0 |
| united states | | bordetella pertussis chla-20 | no rank | 264 | 0 |
| united states | | bordetella pertussis chla-26 | no rank | 84 | 0 |
| united states | | bordetella pertussis h897 | no rank | 348 | 0 |
| united states | | bordetella pertussis h918 | no rank | 122 | 0 |
| united states | | bordetella pertussis h921 | no rank | 98 | 0 |
| united states | | bordetella pertussis h939 | no rank | 88 | 0 |
| united states | | bordetella pertussis h973 | no rank | 126 | 0 |
| united states | | bordetella pertussis i002 | no rank | 128 | 0 |
| united states | | bordetella pertussis i036 | no rank | 94 | 0 |
| united states | | bordetella pertussis i176 | no rank | 68 | 0 |
| united states | | bordetella pertussis sto1-chla-0006 | no rank | 132 | 0 |
| united states | | bordetella pertussis sto1-chla-0011 | no rank | 52 | 0 |
| united states | | bordetella pertussis sto1-choc-0008 | no rank | 250 | 0 |
| united states | | bordetella pertussis sto1-choc-0016 | no rank | 110 | 0 |
| united states | | bordetella pertussis sto1-choc-0017 | no rank | 218 | 0 |
| united states | | bordetella pertussis sto1-choc-0018 | no rank | 256 | 0 |
| united states | | bordetella pertussis sto1-choc-0019 | no rank | 242 | 0 |
| united states | | bordetella pertussis sto1-choc-0021 | no rank | 114 | 0 |
| united states | | bordetella pertussis sto1-chom-0012 | no rank | 76 | 0 |
| united states | | bordetella pertussis sto1-cnmc-0004 | no rank | 300 | 0 |
| united states | | bordetella pertussis sto1-seat-0004 | no rank | 244 | 0 |
| united states | | bordetella pertussis sto1-seat-0006 | no rank | 100 | 0 |
| united states | | bordetella pertussis sto1-seat-0007 | no rank | 54 | 0 |
| united states | arizona | bordetella pertussis | species | 6 | 3 |
| united states | california | bordetella pertussis | species | 56 | 9 |
| united states | colorado | bordetella pertussis | species | 78 | 4 |
| united states | connecticut | bordetella pertussis | species | 27 | 0 |
| united states | delaware | bordetella pertussis | species | 6 | 2 |
| united states | florida | bordetella pertussis | species | 5 | 3 |
| united states | georgia | bordetella pertussis | species | 21 | 1 |
| united states | hawaii | bordetella pertussis | species | 1 | 0 |
| united states | idaho | bordetella pertussis | species | 3 | 0 |
| united states | illinois | bordetella pertussis | species | 5 | 2 |
| united states | indiana | bordetella pertussis | species | 19 | 1 |
| united states | kansas | bordetella pertussis | species | 0 | 1 |
| united states | kentucky | bordetella pertussis | species | 1 | 2 |
| united states | louisiana | bordetella pertussis | species | 0 | 1 |
| united states | maryland | bordetella pertussis | species | 19 | 2 |
| united states | massachusetts | bordetella pertussis | species | 0 | 10 |
| united states | michigan | bordetella pertussis | species | 5 | 3 |
| united states | minnesota | bordetella pertussis | species | 77 | 6 |
| united states | mississippi | bordetella pertussis | species | 1 | 0 |
| united states | missouri | bordetella pertussis | species | 12 | 2 |
| united states | montana | bordetella pertussis | species | 4 | 0 |
| united states | nebraska | bordetella pertussis | species | 2 | 0 |
| united states | nevada | bordetella pertussis | species | 2 | 0 |
| united states | new hampshire | bordetella pertussis | species | 0 | 1 |
| united states | new jersey | bordetella pertussis | species | 2 | 0 |
| united states | new mexico | bordetella pertussis | species | 12 | 0 |
| united states | new york | bordetella pertussis | species | 77 | 6 |
| united states | north carolina | bordetella pertussis | species | 2 | 1 |
| united states | ohio | bordetella pertussis | species | 6 | 7 |
| united states | oregon | bordetella pertussis | species | 45 | 1 |
| united states | pennsylvania | bordetella pertussis | species | 16 | 0 |
| united states | south carolina | bordetella pertussis | species | 5 | 0 |
| united states | tennessee | bordetella pertussis | species | 4 | 5 |
| united states | texas | bordetella pertussis | species | 4 | 4 |
| united states | utah | bordetella pertussis | species | 1 | 1 |
| united states | vermont | bordetella pertussis | species | 77 | 0 |
| united states | virginia | bordetella pertussis | species | 15 | 2 |
| united states | virginia | bordetella pertussis 18323 | no rank | 6 | 0 |
| united states | washington | bordetella pertussis | species | 12 | 6 |
| united states | west virginia | bordetella pertussis | species | 0 | 1 |
| united states | wisconsin | bordetella pertussis | species | 4 | 6 |