| enterovirus b | homo sapiens | Portugal: Coimbra | Homo sapiens | 379139111 |
| babesia occultans | bos taurus | Portugal: Coruche | Bos taurus | 399513948 |
| paraburkholderia fungorum | lolium multiflorum | Portugal: Crato | Lolium multiflorum Lam. (stem) | 971533722 |
| paraburkholderia fungorum | lolium multiflorum | Portugal: Crato | Lolium multiflorum Lam. (root) | 971533714 |
| paraburkholderia fungorum | lolium multiflorum | Portugal: Crato | Lolium multiflorum Lam. (stem) | 971533713 |
| rabbit hemorrhagic disease virus | oryctolagus cuniculus | Portugal: Coruche | Oryctolagus cuniculus | 764810398 |
| philophthalmus lucipetus | larus fuscus | Portugal: Culatra Island | Larus fuscus | 1254918945 |