| algeria | | cryptosporidium sp. hedgehog genotype | species | 8 | 0 |
| australia | | cryptosporidium sp. | species | 41 | 0 |
| australia | | cryptosporidium sp. 428 | species | 1 | 0 |
| australia | | cryptosporidium sp. bw630 | species | 1 | 0 |
| australia | | cryptosporidium sp. bw633 | species | 1 | 0 |
| australia | | cryptosporidium sp. deer genotype | species | 1 | 0 |
| australia | | cryptosporidium sp. duck-like genotype | species | 1 | 0 |
| australia | | cryptosporidium sp. egk1 | species | 4 | 0 |
| australia | | cryptosporidium sp. egk3 | species | 3 | 0 |
| australia | | cryptosporidium sp. genotype mw1 | species | 1 | 0 |
| australia | | cryptosporidium sp. genotype mw2 | species | 1 | 0 |
| australia | | cryptosporidium sp. genotype mw3 | species | 1 | 0 |
| australia | | cryptosporidium sp. genotype mw4 | species | 1 | 0 |
| australia | | cryptosporidium sp. genotype mw5 | species | 1 | 0 |
| australia | | cryptosporidium sp. genotype mw6 | species | 1 | 0 |
| australia | | cryptosporidium sp. genotype rta368 | species | 1 | 0 |
| australia | | cryptosporidium sp. m24 | species | 1 | 0 |
| australia | | cryptosporidium sp. marsupial genotype ii | species | 1 | 0 |
| australia | | cryptosporidium sp. mink genotype | species | 1 | 0 |
| australia | | cryptosporidium sp. piscine genotype 4 | species | 1 | 0 |
| australia | | cryptosporidium sp. piscine genotype 5 | species | 1 | 0 |
| australia | | cryptosporidium sp. rat/ap-2012/gii | no rank | 6 | 0 |
| australia | | cryptosporidium sp. rat/ap-2012/giii | no rank | 4 | 0 |
| australia | | cryptosporidium sp. ry-2015 | species | 1 | 0 |
| australia | | cryptosporidium sp. sheep genotype i | species | 2 | 0 |
| australia | new south wales | cryptosporidium sp. deer genotype | species | 2 | 0 |
| australia | new south wales | cryptosporidium sp. duck-like genotype | species | 2 | 0 |
| australia | queensland | cryptosporidium sp. mink genotype | species | 2 | 0 |
| australia | south australia | cryptosporidium sp. k1 | species | 15 | 0 |
| australia | tasmania | cryptosporidium sp. otui avk-2014 | species | 5 | 0 |
| australia | victoria | cryptosporidium sp. genotype 1 | species | 1 | 0 |
| australia | victoria | cryptosporidium sp. genotype 2 | species | 1 | 0 |
| australia | victoria | cryptosporidium sp. genotype 3 | species | 1 | 0 |
| austria | vienna | cryptosporidium sp. | species | 9 | 0 |
| bangladesh | | cryptosporidium sp. horse genotype | species | 1 | 0 |
| belgium | | cryptosporidium sp. horse genotype | species | 3 | 0 |
| brazil | | cryptosporidium sp. | species | 3 | 0 |
| brazil | | cryptosporidium sp. avian genotype iii | species | 5 | 0 |
| brazil | | cryptosporidium sp. avian genotype v | species | 1 | 0 |
| brazil | | cryptosporidium sp. calafate s1 | species | 1 | 0 |
| brazil | | cryptosporidium sp. calopsita s2 | species | 1 | 0 |
| brazil | | cryptosporidium sp. calopsita s3 | species | 1 | 0 |
| brazil | | cryptosporidium sp. calopsita s4 | species | 1 | 0 |
| brazil | | cryptosporidium sp. canario s5 | species | 1 | 0 |
| brazil | | cryptosporidium sp. canario s6 | species | 1 | 0 |
| brazil | | cryptosporidium sp. d1 | species | 1 | 0 |
| brazil | | cryptosporidium sp. d36 | species | 1 | 0 |
| brazil | | cryptosporidium sp. d38 | species | 2 | 0 |
| brazil | | cryptosporidium sp. d39 | species | 2 | 0 |
| brazil | | cryptosporidium sp. ex struthio camelus 2005 | species | 3 | 0 |
| brazil | | cryptosporidium sp. hamster genotype | species | 1 | 0 |
| brazil | | cryptosporidium sp. manon c7 | species | 1 | 0 |
| brazil | | cryptosporidium sp. mvm-2014 | species | 1 | 0 |
| brazil | | cryptosporidium sp. o92 | species | 1 | 0 |
| brazil | | cryptosporidium sp. o93 | species | 1 | 0 |
| brazil | | cryptosporidium sp. pato 46 | species | 1 | 0 |
| brazil | | cryptosporidium sp. pig/h4/bra/gii | species | 1 | 0 |
| brazil | | cryptosporidium sp. pig/i1/bra/gii | species | 1 | 0 |
| brazil | | cryptosporidium tyzzeri | species | 2 | 0 |
| brazil | ceara | cryptosporidium sp. | species | 0 | 1 |
| brazil | federal district | cryptosporidium sp. | species | 0 | 1 |
| brazil | mato grosso do sul | cryptosporidium sp. deer genotype | species | 2 | 0 |
| brazil | minas gerais | cryptosporidium sp. | species | 0 | 1 |
| brazil | para | cryptosporidium sp. | species | 0 | 2 |
| brazil | parana | cryptosporidium sp. | species | 0 | 1 |
| brazil | parana | cryptosporidium sp. genotype brpr1 | species | 6 | 0 |
| brazil | rio de janeiro | cryptosporidium sp. | species | 0 | 5 |
| brazil | santa catarina | cryptosporidium sp. | species | 0 | 1 |
| brazil | sao paulo | cryptosporidium sp. | species | 0 | 10 |
| canada | | cryptosporidium sp. 5348a | species | 1 | 0 |
| canada | | cryptosporidium sp. a5181b-1 | species | 1 | 0 |
| canada | | cryptosporidium sp. a5692b-1 | species | 1 | 0 |
| canada | | cryptosporidium sp. b5181b-1 | species | 1 | 0 |
| canada | | cryptosporidium sp. b5206a-1 | species | 1 | 0 |
| canada | | cryptosporidium sp. b5421-1st | species | 1 | 0 |
| canada | | cryptosporidium sp. b5674-1st | species | 1 | 0 |
| canada | | cryptosporidium sp. b5687a-1 | species | 1 | 0 |
| canada | | cryptosporidium sp. b5687b-1 | species | 1 | 0 |
| canada | | cryptosporidium sp. b5692b-1 | species | 1 | 0 |
| canada | | cryptosporidium sp. b6066a-1 | species | 1 | 0 |
| canada | | cryptosporidium sp. b6066b-1 | species | 1 | 0 |
| canada | | cryptosporidium sp. b6076a-1 | species | 1 | 0 |
| canada | | cryptosporidium sp. c5181a-1 | species | 1 | 0 |
| canada | | cryptosporidium sp. c5181b-1 | species | 1 | 0 |
| canada | | cryptosporidium sp. c5277b-2 | species | 1 | 0 |
| canada | | cryptosporidium sp. c5605-1st | species | 1 | 0 |
| canada | | cryptosporidium sp. c5686b-2 | species | 1 | 0 |
| canada | | cryptosporidium sp. c5687b-1 | species | 1 | 0 |
| canada | | cryptosporidium sp. c5740-1st | species | 1 | 0 |
| canada | | cryptosporidium sp. c5823-1st | species | 1 | 0 |
| canada | | cryptosporidium sp. c5902-2nd | species | 1 | 0 |
| canada | ontario | cryptosporidium sp. 9870 | species | 1 | 0 |
| canada | ontario | cryptosporidium sp. muskrat genotype i (w7) | species | 7 | 0 |
| canada | ontario | cryptosporidium sp. muskrat genotype ii (w16) | species | 8 | 0 |
| canada | ontario | cryptosporidium sp. shrew genotype (w5) | species | 1 | 0 |
| canada | ontario | cryptosporidium sp. vole genotype (w15) | species | 1 | 0 |
| chile | santiago metropolitan region | cryptosporidium sp. | species | 0 | 1 |
| chile | valparaiso region | cryptosporidium sp. | species | 0 | 1 |
| china | | cryptosporidium sp. | species | 66 | 0 |
| china | | cryptosporidium sp. 9111 | species | 1 | 0 |
| china | | cryptosporidium sp. ahcf-1 | species | 1 | 0 |
| china | | cryptosporidium sp. ahcf-2 | species | 1 | 0 |
| china | | cryptosporidium sp. ahcf-3 | species | 1 | 0 |
| china | | cryptosporidium sp. ahcf-4 | species | 1 | 0 |
| china | | cryptosporidium sp. ahcf-5 | species | 1 | 0 |
| china | | cryptosporidium sp. ahcf-6 | species | 1 | 0 |
| china | | cryptosporidium sp. avian genotype ii | species | 2 | 0 |
| china | | cryptosporidium sp. avian genotype v | species | 3 | 0 |
| china | | cryptosporidium sp. cervine genotype | species | 66 | 0 |
| china | | cryptosporidium sp. chb-01 | species | 3 | 0 |
| china | | cryptosporidium sp. chb-02 | species | 3 | 0 |
| china | | cryptosporidium sp. chb-03 | species | 3 | 0 |
| china | | cryptosporidium sp. chb-04 | species | 3 | 0 |
| china | | cryptosporidium sp. chb-05 | species | 3 | 0 |
| china | | cryptosporidium sp. chb-06 | species | 3 | 0 |
| china | | cryptosporidium sp. chipmunk genotype iii | species | 2 | 0 |
| china | | cryptosporidium sp. chny4 | species | 1 | 0 |
| china | | cryptosporidium sp. deer genotype | species | 13 | 0 |
| china | | cryptosporidium sp. donkey genotype | species | 2 | 0 |
| china | | cryptosporidium sp. ex perameles bougainville | species | 1 | 0 |
| china | | cryptosporidium sp. ferret genotype | species | 3 | 0 |
| china | | cryptosporidium sp. g21 | species | 1 | 0 |
| china | | cryptosporidium sp. g22 | species | 1 | 0 |
| china | | cryptosporidium sp. g23 | species | 1 | 0 |
| china | | cryptosporidium sp. g24 | species | 1 | 0 |
| china | | cryptosporidium sp. g25 | species | 1 | 0 |
| china | | cryptosporidium sp. g26 | species | 1 | 0 |
| china | | cryptosporidium sp. g27 | species | 1 | 0 |
| china | | cryptosporidium sp. g28 | species | 1 | 0 |
| china | | cryptosporidium sp. g36 | species | 1 | 0 |
| china | | cryptosporidium sp. giant panda genotype | species | 1 | 0 |
| china | | cryptosporidium sp. ground squirrel genotype ii | species | 3 | 0 |
| china | | cryptosporidium sp. hamster genotype | species | 1 | 0 |
| china | | cryptosporidium sp. hjy3 | species | 5 | 0 |
| china | | cryptosporidium sp. hjy6 | species | 4 | 0 |
| china | | cryptosporidium sp. hjy8 | species | 1 | 0 |
| china | | cryptosporidium sp. hjy9 | species | 1 | 0 |
| china | | cryptosporidium sp. hny1 | species | 1 | 0 |
| china | | cryptosporidium sp. hny2 | species | 4 | 0 |
| china | | cryptosporidium sp. hny4 | species | 3 | 0 |
| china | | cryptosporidium sp. hny6 | species | 1 | 0 |
| china | | cryptosporidium sp. horse genotype | species | 8 | 0 |
| china | | cryptosporidium sp. llx-2003 | species | 3 | 0 |
| china | | cryptosporidium sp. lphn | species | 2 | 0 |
| china | | cryptosporidium sp. mink genotype | species | 13 | 0 |
| china | | cryptosporidium sp. mouse genotype i | species | 2 | 0 |
| china | | cryptosporidium sp. njcf-1 | species | 1 | 0 |
| china | | cryptosporidium sp. njcf-2 | species | 1 | 0 |
| china | | cryptosporidium sp. njcf-3 | species | 2 | 0 |
| china | | cryptosporidium sp. njcf-4 | species | 1 | 0 |
| china | | cryptosporidium sp. njcf-5 | species | 1 | 0 |
| china | | cryptosporidium sp. njcf-6 | species | 1 | 0 |
| china | | cryptosporidium sp. p1 | species | 1 | 0 |
| china | | cryptosporidium sp. pig genotype ii | species | 18 | 0 |
| china | | cryptosporidium sp. rat genotype ii | species | 2 | 0 |
| china | | cryptosporidium sp. rat genotype iii | species | 1 | 0 |
| china | | cryptosporidium sp. shcf-1 | species | 1 | 0 |
| china | | cryptosporidium sp. shcf-2 | species | 1 | 0 |
| china | | cryptosporidium sp. shcf-3 | species | 1 | 0 |
| china | | cryptosporidium sp. shcf-4 | species | 1 | 0 |
| china | | cryptosporidium sp. shcf-6 | species | 1 | 0 |
| china | | cryptosporidium sp. sltl05c | species | 9 | 0 |
| china | | cryptosporidium sp. yak genotype | species | 1 | 0 |
| china | | cryptosporidium sp. z10 | species | 1 | 0 |
| china | | cryptosporidium sp. z13 | species | 1 | 0 |
| china | | cryptosporidium tyzzeri | species | 3 | 0 |
| china | anhui | cryptosporidium sp. | species | 96 | 0 |
| china | guangdong | cryptosporidium sp. | species | 12 | 0 |
| china | guangxi | cryptosporidium sp. | species | 1 | 0 |
| china | hainan | cryptosporidium sp. | species | 1 | 0 |
| china | henan | cryptosporidium sp. | species | 21 | 0 |
| china | inner mongolia | cryptosporidium sp. horse genotype | species | 4 | 0 |
| china | shandong | cryptosporidium sp. horse genotype | species | 2 | 0 |
| china | shandong | cryptosporidium sp. mink genotype | species | 1 | 0 |
| china | shanghai shi | cryptosporidium sp. ecust 78 | species | 1 | 0 |
| china | shanghai shi | cryptosporidium tyzzeri | species | 1 | 0 |
| china | xinjiang | cryptosporidium sp. | species | 1 | 0 |
| china | xinjiang | cryptosporidium sp. horse genotype | species | 1 | 0 |
| china | yunnan | cryptosporidium sp. bat stool 'yunnan' | species | 1 | 0 |
| china | yunnan | cryptosporidium sp. ex hipposideros pomona 'zhenyuan' | species | 1 | 0 |
| china | yunnan | cryptosporidium sp. ex rhinolophus sinicus 'menglian' | species | 1 | 0 |
| china | yunnan | cryptosporidium sp. ex rousettus leschenaultia 'lincang' | species | 1 | 0 |
| china | yunnan | cryptosporidium sp. p1 | species | 7 | 0 |
| colombia | | cryptosporidium sp. | species | 11 | 0 |
| costa rica | | cryptosporidium sp. | species | 4 | 0 |
| czech republic | | cryptosporidium sp. | species | 28 | 0 |
| czech republic | | cryptosporidium sp. b1-36 | species | 2 | 0 |
| czech republic | | cryptosporidium sp. b1-41 | species | 2 | 0 |
| czech republic | | cryptosporidium sp. b2-6 | species | 1 | 0 |
| czech republic | | cryptosporidium sp. b2-7 | species | 1 | 0 |
| czech republic | | cryptosporidium sp. bat genotype iv | species | 4 | 0 |
| czech republic | | cryptosporidium sp. crcz-27 | species | 1 | 0 |
| czech republic | | cryptosporidium sp. czech b1 | species | 2 | 0 |
| czech republic | | cryptosporidium sp. deer genotype | species | 1 | 0 |
| czech republic | | cryptosporidium sp. hedgehog genotype | species | 3 | 0 |
| czech republic | | cryptosporidium sp. horse genotype | species | 2 | 0 |
| czech republic | | cryptosporidium sp. pig genotype ii | species | 1 | 0 |
| czech republic | | cryptosporidium sp. tortoise genotype iii | species | 2 | 0 |
| czech republic | | cryptosporidium tyzzeri | species | 10 | 0 |
| denmark | | cryptosporidium sp. 2879 | species | 1 | 0 |
| denmark | | cryptosporidium sp. k4515 | species | 2 | 0 |
| denmark | | cryptosporidium sp. s2317 | species | 1 | 0 |
| egypt | | cryptosporidium sp. | species | 3 | 0 |
| finland | | cryptosporidium sp. | species | 14 | 0 |
| france | | cryptosporidium sp. | species | 3 | 0 |
| france | | cryptosporidium sp. cervine genotype | species | 1 | 0 |
| france | | cryptosporidium sp. gc-2015 | species | 22 | 0 |
| france | alsace region | cryptosporidium sp. | species | 0 | 1 |
| france | corse region | cryptosporidium sp. rat genotype ii | species | 6 | 0 |
| france | corse region | cryptosporidium sp. rat genotype iii | species | 1 | 0 |
| germany | | cryptosporidium sp. | species | 15 | 0 |
| germany | | cryptosporidium sp. avian genotype ix | species | 1 | 0 |
| germany | | cryptosporidium sp. avian genotype vii | species | 1 | 0 |
| germany | | cryptosporidium sp. avian genotype viii | species | 1 | 0 |
| germany | | cryptosporidium sp. hedgehog/deu/2008 | species | 12 | 0 |
| germany | | cryptosporidium sp. skunk genotype | species | 3 | 0 |
| honduras | | cryptosporidium sp. | species | 12 | 0 |
| india | | cryptosporidium sp. | species | 4 | 0 |
| india | | cryptosporidium sp. avian genotype iii | species | 1 | 0 |
| india | | cryptosporidium sp. crb11 | species | 1 | 0 |
| india | | cryptosporidium sp. crb28 | species | 1 | 0 |
| india | | cryptosporidium sp. crb29 | species | 1 | 0 |
| india | | cryptosporidium sp. crb31 | species | 1 | 0 |
| india | | cryptosporidium sp. crb34 | species | 1 | 0 |
| india | | cryptosporidium sp. crb66 | species | 1 | 0 |
| india | | cryptosporidium sp. crh30 | species | 1 | 0 |
| india | | cryptosporidium sp. crh74 | species | 1 | 0 |
| india | | cryptosporidium sp. crw10 | species | 1 | 0 |
| india | karnataka | cryptosporidium sp. | species | 1 | 0 |
| iran | | cryptosporidium sp. | species | 5 | 0 |
| iran | | cryptosporidium sp. 103 | species | 1 | 0 |
| iran | | cryptosporidium sp. 18 | species | 1 | 0 |
| iran | | cryptosporidium sp. avian genotype iii | species | 14 | 0 |
| iran | | cryptosporidium tyzzeri | species | 2 | 0 |
| iran | fars province | cryptosporidium sp. | species | 1 | 0 |
| ireland | | cryptosporidium sp. eire v zz67 | species | 2 | 0 |
| ireland | | cryptosporidium sp. eire vi w37 | species | 1 | 0 |
| ireland | | cryptosporidium sp. eire w65.4 | species | 1 | 0 |
| ireland | | cryptosporidium sp. eire w65.5 | species | 1 | 0 |
| ireland | | cryptosporidium sp. oyster 19 | species | 1 | 0 |
| italy | | cryptosporidium sp. | species | 2 | 0 |
| italy | | cryptosporidium sp. chipmunk genotype i | species | 7 | 0 |
| italy | | cryptosporidium sp. crit-20 | species | 2 | 0 |
| italy | | cryptosporidium sp. ferret genotype | species | 6 | 0 |
| italy | | cryptosporidium sp. horse genotype | species | 9 | 0 |
| italy | | cryptosporidium sp. skunk genotype | species | 3 | 0 |
| italy | | cryptosporidium sp. sv30 | species | 1 | 0 |
| italy | | cryptosporidium sp. sv33 | species | 1 | 0 |
| japan | | cryptosporidium sp. kn732 | species | 1 | 0 |
| japan | | cryptosporidium sp. mnj-1 | species | 3 | 0 |
| japan | aichi prefecture | cryptosporidium sp. ferret genotype | species | 1 | 0 |
| japan | hokkaido prefecture | cryptosporidium sp. deer genotype | species | 17 | 0 |
| japan | hokkaido prefecture | cryptosporidium sp. mrb001 | species | 1 | 0 |
| japan | kanagawa prefecture | cryptosporidium sp. cb:131141-1 | species | 4 | 0 |
| japan | kanagawa prefecture | cryptosporidium sp. cb:14231-2 | species | 3 | 0 |
| japan | kanagawa prefecture | cryptosporidium sp. cb:19725-2 | species | 3 | 0 |
| japan | kanagawa prefecture | cryptosporidium sp. cb:20041-1 | species | 4 | 0 |
| japan | kanagawa prefecture | cryptosporidium sp. cb:20108-1 | species | 3 | 0 |
| japan | kanagawa prefecture | cryptosporidium sp. cb:932 | species | 3 | 0 |
| japan | kanagawa prefecture | cryptosporidium sp. cb:933 | species | 3 | 0 |
| japan | kanagawa prefecture | cryptosporidium sp. ys-2017 | species | 3 | 0 |
| japan | miyagi ken prefecture | cryptosporidium sp. jfm 15 | species | 5 | 0 |
| japan | osaka prefecture | cryptosporidium sp. | species | 5 | 0 |
| japan | osaka prefecture | cryptosporidium sp. skunk genotype | species | 6 | 0 |
| japan | saitama prefecture | cryptosporidium sp. | species | 0 | 1 |
| japan | saitama prefecture | cryptosporidium sp. masked palm civet genotype | species | 3 | 0 |
| japan | saitama prefecture | cryptosporidium sp. skunk genotype | species | 1 | 0 |
| japan | saitama prefecture | cryptosporidium sp. skunk-like genotype | species | 3 | 0 |
| japan | tokyo prefecture | cryptosporidium sp. bah7 | species | 2 | 0 |
| japan | tokyo prefecture | cryptosporidium sp. horse genotype | species | 4 | 0 |
| jordan | | cryptosporidium sp. | species | 1 | 0 |
| kenya | | cryptosporidium sp. horse genotype | species | 4 | 0 |
| lebanon | | cryptosporidium sp. | species | 52 | 0 |
| malaysia | | cryptosporidium sp. | species | 9 | 0 |
| malaysia | | cryptosporidium sp. m16 | species | 1 | 0 |
| malaysia | | cryptosporidium sp. m29 | species | 1 | 0 |
| malaysia | | cryptosporidium sp. m30 | species | 1 | 0 |
| malaysia | | cryptosporidium sp. rat genotype ii | species | 5 | 0 |
| malaysia | | cryptosporidium sp. rat genotype iii | species | 1 | 0 |
| netherlands | | cryptosporidium sp. horse genotype | species | 1 | 0 |
| netherlands | | cryptosporidium sp. koi carp | species | 2 | 0 |
| new zealand | | cryptosporidium tyzzeri | species | 3 | 0 |
| nigeria | | cryptosporidium sp. | species | 4 | 0 |
| nigeria | oyo | cryptosporidium sp. | species | 2 | 0 |
| nigeria | oyo | cryptosporidium sp. rat genotype | species | 28 | 0 |
| norway | | cryptosporidium sp. | species | 1 | 0 |
| norway | | cryptosporidium sp. cervine genotype | species | 3 | 0 |
| papua new guinea | | cryptosporidium sp. rat genotype ii | species | 1 | 0 |
| philippines | | cryptosporidium sp. | species | 1 | 0 |
| philippines | | cryptosporidium sp. bat genotype ii | species | 2 | 0 |
| philippines | | cryptosporidium sp. bat genotype v | species | 2 | 0 |
| philippines | | cryptosporidium sp. bat genotype vi | species | 3 | 0 |
| philippines | | cryptosporidium sp. bat genotype vii | species | 2 | 0 |
| poland | | cryptosporidium sp. | species | 2 | 0 |
| poland | | cryptosporidium sp. horse genotype | species | 2 | 0 |
| poland | | cryptosporidium sp. skunk genotype | species | 2 | 0 |
| portugal | | cryptosporidium sp. zoo.195 | species | 1 | 0 |
| romania | | cryptosporidium sp. | species | 1 | 0 |
| serbia | | cryptosporidium tyzzeri | species | 4 | 0 |
| slovakia | | cryptosporidium sp. | species | 7 | 0 |
| slovenia | | cryptosporidium sp. si23 | species | 2 | 0 |
| south korea | | cryptosporidium sp. ksfm | species | 1 | 0 |
| spain | | cryptosporidium sp. | species | 19 | 0 |
| spain | | cryptosporidium sp. avian genotype iii | species | 3 | 0 |
| spain | | cryptosporidium sp. duck genotype b | species | 1 | 0 |
| spain | | cryptosporidium sp. goose genotype id | species | 1 | 0 |
| spain | | cryptosporidium sp. hgc-2014 | species | 1 | 0 |
| spain | | cryptosporidium tyzzeri | species | 1 | 0 |
| spain | andalusia | cryptosporidium sp. | species | 0 | 1 |
| spain | canary islands | cryptosporidium sp. | species | 15 | 0 |
| spain | canary islands | cryptosporidium sp. rat genotype ii | species | 7 | 0 |
| spain | castile and leon | cryptosporidium sp. | species | 0 | 2 |
| spain | galicia | cryptosporidium sp. | species | 0 | 1 |
| spain | madrid | cryptosporidium sp. | species | 0 | 1 |
| sri lanka | | cryptosporidium sp. genotype 10 | species | 1 | 0 |
| sri lanka | | cryptosporidium sp. genotype 11 | species | 1 | 0 |
| sri lanka | | cryptosporidium sp. genotype 4 | species | 1 | 0 |
| sri lanka | | cryptosporidium sp. genotype 5 | species | 1 | 0 |
| sri lanka | | cryptosporidium sp. genotype 6 | species | 1 | 0 |
| sri lanka | | cryptosporidium sp. genotype 7 | species | 1 | 0 |
| sri lanka | | cryptosporidium sp. genotype 8 | species | 1 | 0 |
| sri lanka | | cryptosporidium sp. genotype 9 | species | 1 | 0 |
| sweden | | cryptosporidium sp. | species | 4 | 0 |
| sweden | | cryptosporidium sp. chipmunk genotype i | species | 4 | 0 |
| sweden | | cryptosporidium sp. horse genotype | species | 1 | 0 |
| sweden | | cryptosporidium sp. mouse185 | species | 1 | 0 |
| sweden | | cryptosporidium sp. rat196 | species | 1 | 0 |
| switzerland | | cryptosporidium sp. | species | 2 | 0 |
| switzerland | | cryptosporidium sp. pig 1 | species | 1 | 0 |
| taiwan | | cryptosporidium sp. taiwan a-4 | species | 1 | 0 |
| taiwan | | cryptosporidium sp. taiwan b2-21 | species | 1 | 0 |
| thailand | | cryptosporidium sp. | species | 12 | 0 |
| thailand | | cryptosporidium sp. mouse genotype | species | 3 | 0 |
| turkey | | cryptosporidium sp. nev10 | species | 1 | 0 |
| united kingdom | | cryptosporidium sp. a16 | species | 1 | 0 |
| united kingdom | | cryptosporidium sp. a26 | species | 2 | 0 |
| united kingdom | | cryptosporidium sp. a29 | species | 1 | 0 |
| united kingdom | | cryptosporidium sp. a7 | species | 1 | 0 |
| united kingdom | | cryptosporidium sp. cervine genotype | species | 5 | 0 |
| united kingdom | | cryptosporidium sp. horse genotype | species | 5 | 0 |
| united kingdom | | cryptosporidium sp. iiaa18g1r1 | species | 1 | 0 |
| united kingdom | | cryptosporidium sp. muskrat genotype ii | species | 1 | 0 |
| united kingdom | | cryptosporidium sp. rat genotype | species | 1 | 0 |
| united kingdom | | cryptosporidium sp. scotland 23 | species | 1 | 0 |
| united kingdom | | cryptosporidium sp. scotland 28 | species | 1 | 0 |
| united kingdom | | cryptosporidium sp. scotland 55 | species | 1 | 0 |
| united kingdom | | cryptosporidium sp. skunk genotype | species | 3 | 0 |
| united kingdom | | cryptosporidium sp. uk e1 | species | 1 | 0 |
| united kingdom | | cryptosporidium sp. uk e2 | species | 1 | 0 |
| united kingdom | | cryptosporidium sp. uk e3 | species | 1 | 0 |
| united kingdom | | cryptosporidium sp. uk e4 | species | 1 | 0 |
| united kingdom | | cryptosporidium sp. uk e5 | species | 1 | 0 |
| united kingdom | | cryptosporidium sp. uk e6 | species | 1 | 0 |
| united kingdom | | cryptosporidium sp. vas-2014 | species | 5 | 0 |
| united kingdom | | cryptosporidium sp. w13314 | species | 2 | 0 |
| united kingdom | | cryptosporidium sp. w14532 | species | 1 | 0 |
| united kingdom | | cryptosporidium sp. w19 | species | 1 | 0 |
| united kingdom | | cryptosporidium sp. w21960 | species | 1 | 0 |
| united kingdom | england | cryptosporidium sp. dogtype_556 | species | 1 | 0 |
| united kingdom | scotland | cryptosporidium sp. | species | 1 | 0 |
| united states | | cryptosporidium sp. | species | 134 | 0 |
| united states | | cryptosporidium sp. 16008 | no rank | 2 | 0 |
| united states | | cryptosporidium sp. 3568 | species | 1 | 0 |
| united states | | cryptosporidium sp. 3726 | species | 1 | 0 |
| united states | | cryptosporidium sp. 5538 | species | 1 | 0 |
| united states | | cryptosporidium sp. avian genotype iii | species | 1 | 0 |
| united states | | cryptosporidium sp. avian genotype v | species | 1 | 0 |
| united states | | cryptosporidium sp. avian genotype vi | species | 5 | 0 |
| united states | | cryptosporidium sp. bat genotype iii | species | 3 | 0 |
| united states | | cryptosporidium sp. cervine genotype | species | 1 | 0 |
| united states | | cryptosporidium sp. chipmunk genotype ii | species | 65 | 0 |
| united states | | cryptosporidium sp. chipmunk genotype iv | species | 5 | 0 |
| united states | | cryptosporidium sp. chipmunk lx-2015 | species | 1 | 0 |
| united states | | cryptosporidium sp. deer genotype | species | 1 | 0 |
| united states | | cryptosporidium sp. ex marmota flaviventris | species | 2 | 0 |
| united states | | cryptosporidium sp. intestines agrionemys/dr2008/usa/2008 | species | 1 | 0 |
| united states | | cryptosporidium sp. intestines malacochersus/mt2007/usa/2007 | species | 1 | 0 |
| united states | | cryptosporidium sp. mink genotype | species | 1 | 0 |
| united states | | cryptosporidium sp. 'opossum genotype ii' | species | 3 | 0 |
| united states | | cryptosporidium sp. skunk genotype | species | 2 | 0 |
| united states | | cryptosporidium sp. stomach agrionemys/cg2007/usa/2007 | species | 1 | 0 |
| united states | | cryptosporidium sp. vas-2014b | species | 1 | 0 |
| united states | california | cryptosporidium sp. | species | 2 | 0 |
| united states | california | cryptosporidium sp. d17-d10 | species | 1 | 0 |
| united states | california | cryptosporidium sp. deer mouse strain | species | 1 | 0 |
| united states | california | cryptosporidium sp. g14-b07 | species | 1 | 0 |
| united states | california | cryptosporidium sp. g15-d08 | species | 1 | 0 |
| united states | california | cryptosporidium sp. g20-d11 | species | 1 | 0 |
| united states | california | cryptosporidium sp. g3-g02 | species | 1 | 0 |
| united states | california | cryptosporidium sp. g3-h03 | species | 1 | 0 |
| united states | california | cryptosporidium sp. g4-f05 | species | 1 | 0 |
| united states | california | cryptosporidium sp. g5-h06 | species | 1 | 0 |
| united states | california | cryptosporidium sp. genotype sbey11c | species | 4 | 0 |
| united states | california | cryptosporidium sp. genotype sbey11e | species | 1 | 0 |
| united states | california | cryptosporidium sp. h1-b01 | species | 1 | 0 |
| united states | california | cryptosporidium sp. morro bay new-1 | species | 1 | 0 |
| united states | california | cryptosporidium sp. morro bay new-2 | species | 181 | 0 |
| united states | california | cryptosporidium sp. morro bay non-crypto-1 | species | 1 | 0 |
| united states | california | cryptosporidium sp. morro bay non-crypto-2 | species | 1 | 0 |
| united states | california | cryptosporidium sp. sbey05c | species | 1 | 0 |
| united states | california | cryptosporidium sp. sbld05a | species | 1 | 0 |
| united states | california | cryptosporidium sp. sbld05c | species | 1 | 0 |
| united states | california | cryptosporidium sp. sbld05d | species | 1 | 0 |
| united states | california | cryptosporidium sp. sltl05c | species | 1 | 0 |
| united states | california | cryptosporidium sp. wild rodent strain | species | 2 | 0 |
| united states | georgia | cryptosporidium sp. 518 | species | 1 | 0 |
| united states | maine | cryptosporidium sp. alb-2011 | species | 5 | 0 |
| united states | minnesota | cryptosporidium sp. deer mouse genotype iii | species | 10 | 0 |
| united states | minnesota | cryptosporidium sp. skunk genotype | species | 8 | 0 |
| united states | missouri | cryptosporidium sp. #691 | species | 1 | 0 |
| united states | missouri | cryptosporidium sp. 815 | species | 1 | 0 |
| united states | new york | cryptosporidium sp. | species | 25 | 0 |
| united states | new york | cryptosporidium sp. beaver genotype | species | 1 | 0 |
| united states | new york | cryptosporidium sp. cervine genotype (w4) | species | 2 | 0 |
| united states | new york | cryptosporidium sp. chipmunk genotype (w17) | species | 1 | 0 |
| united states | new york | cryptosporidium sp. deer mouse genotype i | species | 3 | 0 |
| united states | new york | cryptosporidium sp. deer mouse genotype ii | species | 1 | 0 |
| united states | new york | cryptosporidium sp. deer mouse genotype iii (w1) | species | 1 | 0 |
| united states | new york | cryptosporidium sp. deer mouse genotype iv (w3) | species | 1 | 0 |
| united states | new york | cryptosporidium sp. goose genotype ii | species | 1 | 0 |
| united states | new york | cryptosporidium sp. mink genotype | species | 1 | 0 |
| united states | new york | cryptosporidium sp. muskrat genotype i (w7) | species | 3 | 0 |
| united states | new york | cryptosporidium sp. muskrat genotype ii (w16) | species | 1 | 0 |
| united states | new york | cryptosporidium sp. shrew genotype (w5) | species | 2 | 0 |
| united states | new york | cryptosporidium sp. vole genotype (w15) | species | 1 | 0 |
| united states | north dakota | cryptosporidium sp. | species | 1 | 0 |
| united states | north dakota | cryptosporidium sp. ground squirrel genotype i | species | 10 | 0 |
| united states | north dakota | cryptosporidium sp. ground squirrel genotype ii | species | 2 | 0 |
| united states | north dakota | cryptosporidium sp. ground squirrel genotype iii | species | 14 | 0 |
| united states | tennessee | cryptosporidium sp. | species | 2 | 0 |
| united states | vermont | cryptosporidium sp. chipmunk genotype i | species | 48 | 0 |
| united states | virginia | cryptosporidium sp. | species | 2 | 0 |
| united states | washington | cryptosporidium sp. ro-sh2 | species | 2 | 0 |
| yemen | | cryptosporidium sp. nay-2012 | species | 8 | 0 |