| argentina | | merkel cell polyomavirus | species | 38 | 0 |
| australia | | merkel cell polyomavirus | species | 6 | 0 |
| australia | | trichodysplasia spinulosa-associated polyomavirus | species | 3 | 0 |
| australia | queensland | merkel cell polyomavirus | species | 0 | 1 |
| brazil | | human polyomavirus 5 | species | 10 | 0 |
| brazil | | merkel cell polyomavirus | species | 11 | 0 |
| brazil | | trichodysplasia spinulosa-associated polyomavirus | species | 5 | 0 |
| cameroon | | merkel cell polyomavirus | species | 7 | 0 |
| canada | nova scotia | merkel cell polyomavirus | species | 0 | 1 |
| china | | merkel cell polyomavirus | species | 1 | 0 |
| colombia | | merkel cell polyomavirus | species | 1 | 0 |
| czech republic | hradec kralove region | human polyomavirus 9 | species | 0 | 1 |
| democratic republic of the congo | | pan paniscus polyomavirus 1 | no rank | 2 | 0 |
| democratic republic of the congo | | philantomba monticola polyomavirus 1 | species | 2 | 0 |
| finland | | human polyomavirus 5 | species | 6 | 0 |
| finland | | merkel cell polyomavirus | species | 1 | 0 |
| france | | human polyomavirus ippyv | no rank | 1 | 0 |
| france | | merkel cell polyomavirus | species | 27 | 0 |
| french guiana | | artibeus planirostris polyomavirus 2 | species | 1 | 0 |
| french guiana | | artibeus planirostris polyomavirus 3 | species | 1 | 0 |
| french guiana | | carollia perspicillata polyomavirus 1 | species | 1 | 0 |
| french guiana | | merkel cell polyomavirus | species | 37 | 0 |
| french guiana | | molossus molossus polyomavirus 1 | species | 1 | 0 |
| french guiana | | sturnira lilium polyomavirus 1 | species | 1 | 0 |
| germany | | apodemus flavicollis polyomavirus 1 | species | 4 | 0 |
| germany | | ateles paniscus polyomavirus 1 | species | 2 | 0 |
| germany | | human polyomavirus 12 | species | 2 | 0 |
| germany | | human polyomavirus 9 | species | 2 | 0 |
| germany | | macaca fascicularis polyomavirus 1 | species | 2 | 0 |
| germany | | merkel cell polyomavirus | species | 7 | 0 |
| germany | | mesocricetus auratus polyomavirus 1 | species | 2 | 0 |
| germany | | rattus norvegicus polyomavirus 1 | species | 7 | 0 |
| germany | | sorex araneus polyomavirus 1 | species | 1 | 0 |
| germany | | sorex araneus polyomavirus 1 | species | 3 | 0 |
| germany | | sorex coronatus polyomavirus 1 | species | 4 | 0 |
| germany | | sorex coronatus polyomavirus 1 | species | 1 | 0 |
| germany | | sorex minutus polyomavirus 1 | species | 3 | 0 |
| germany | | sorex minutus polyomavirus 1 | species | 1 | 0 |
| germany | | sus scrofa polyomavirus 1 | species | 2 | 0 |
| hungary | | human polyomavirus 9 | species | 1 | 0 |
| hungary | | merkel cell polyomavirus | species | 1 | 0 |
| indonesia | east java province | bat polyomanvirus 5b-1 | no rank | 2 | 0 |
| indonesia | gorontalo province | bat polyomavirus 5a | species | 2 | 0 |
| indonesia | gorontalo province | bat polyomavirus 5b | species | 2 | 0 |
| iran | | merkel cell polyomavirus | species | 12 | 0 |
| iran | tehran province | merkel cell polyomavirus | species | 0 | 1 |
| italy | | callosciurus erythraeus polyomavirus 1 | species | 4 | 0 |
| italy | | merkel cell polyomavirus | species | 9 | 0 |
| ivory coast | | mastomys natalensis polyomavirus 2 | species | 3 | 0 |
| ivory coast | | pan troglodytes polyomavirus 3 | species | 1 | 0 |
| ivory coast | | pan troglodytes polyomavirus 4 | species | 2 | 0 |
| ivory coast | | pan troglodytes polyomavirus 5 | species | 2 | 0 |
| ivory coast | | pan troglodytes polyomavirus 6 | species | 2 | 0 |
| ivory coast | | pan troglodytes verus polyomavirus 1a | no rank | 2 | 0 |
| ivory coast | | pan troglodytes verus polyomavirus 2a | species | 1 | 0 |
| ivory coast | | pan troglodytes verus polyomavirus 2c | no rank | 3 | 0 |
| ivory coast | | piliocolobus badius polyomavirus 2 | no rank | 2 | 0 |
| ivory coast | | piliocolobus rufomitratus polyomavirus 1 | species | 2 | 0 |
| japan | | merkel cell polyomavirus | species | 138 | 0 |
| japan | | trichodysplasia spinulosa-associated polyomavirus | species | 2 | 0 |
| kenya | | cardioderma cor polyomavirus 1 | species | 2 | 0 |
| kenya | | eidolon helvum polyomavirus 1 | species | 2 | 0 |
| kenya | | otomops polyomavirus ky156 | no rank | 2 | 0 |
| kenya | | otomops polyomavirus ky157 | no rank | 2 | 0 |
| lithuania | | merkel cell polyomavirus | species | 1 | 0 |
| malaysia | | merkel cell polyomavirus | species | 1 | 0 |
| mali | | mastomys natalensis polyomavirus 3 | species | 2 | 0 |
| netherlands | | trichodysplasia spinulosa-associated polyomavirus | species | 5 | 0 |
| new caledonia | | merkel cell polyomavirus | species | 11 | 0 |
| norway | | sorex araneus polyomavirus 1 | species | 1 | 0 |
| philippines | | merkel cell polyomavirus | species | 1 | 0 |
| portugal | | human polyomavirus 5 | species | 26 | 0 |
| republic of the congo | | gorilla gorilla gorilla polyomavirus 1 | species | 2 | 0 |
| spain | | merkel cell polyomavirus | species | 17 | 0 |
| spain | | mesocricetus auratus polyomavirus 1 | species | 5 | 0 |
| sweden | | merkel cell polyomavirus | species | 13 | 0 |
| sweden | stockholm | merkel cell polyomavirus | species | 0 | 1 |
| thailand | | tupaia glis polyomavirus 1 | species | 4 | 0 |
| uganda | | pan troglodytes polyomavirus 7 | species | 2 | 0 |
| united kingdom | | merkel cell polyomavirus | species | 2 | 0 |
| united kingdom | | mesocricetus auratus polyomavirus 1 | species | 2 | 0 |
| united kingdom | | trichodysplasia spinulosa-associated polyomavirus | species | 1 | 0 |
| united states | | human polyomavirus 9 | species | 3 | 0 |
| united states | | li polyomavirus | no rank | 2 | 0 |
| united states | | merkel cell polyomavirus | species | 59 | 0 |
| united states | | new jersey polyomavirus-2013 | species | 2 | 0 |
| united states | | raccoon polyomavirus | species | 3 | 0 |
| united states | | trichodysplasia spinulosa-associated polyomavirus | species | 9 | 0 |
| united states | california | raccoon polyomavirus | species | 0 | 2 |
| united states | illinois | mus musculus polyomavirus 1 | species | 1 | 0 |
| united states | oregon | raccoon polyomavirus | species | 0 | 2 |
| united states | pennsylvania | merkel cell polyomavirus | species | 0 | 1 |
| uruguay | | merkel cell polyomavirus | species | 36 | 0 |
| zambia | lusaka province | miniopterus schreibersii polyomavirus 1 | species | 4 | 0 |
| zambia | lusaka province | miniopterus schreibersii polyomavirus 2 | species | 2 | 0 |
| zambia | northern province | chlorocebus pygerythrus polyomavirus 1 | species | 4 | 0 |
| zambia | northern province | chlorocebus pygerythrus polyomavirus 3 | species | 33 | 0 |
| zambia | northern province | yellow baboon polyomavirus 1 | species | 2 | 0 |