| inparanoid: a comprehensive database of eukaryotic orthologs. | the inparanoid eukaryotic ortholog database (http://inparanoid.cgb.ki.se/) is a collection of pairwise ortholog groups between 17 whole genomes; anopheles gambiae, caenorhabditis briggsae, caenorhabditis elegans, drosophila melanogaster, danio rerio, takifugu rubripes, gallus gallus, homo sapiens, mus musculus, pan troglodytes, rattus norvegicus, oryza sativa, plasmodium falciparum, arabidopsis thaliana, escherichia coli, saccharomyces cerevisiae and schizosaccharomyces pombe. complete proteomes ... | 2005 | 15608241 |
| a multispecies comparison of the metazoan 3'-processing downstream elements and the cstf-64 rna recognition motif. | the cleavage stimulation factor (cstf) is a required protein complex for eukaryotic mrna 3'-processing. cstf interacts with 3'-processing downstream elements (dses) through its 64-kda subunit, cstf-64; however, the exact nature of this interaction has remained unclear. we used est-to-genome alignments to identify and extract large sets of putative 3'-processing sites for mrna from ten metazoan species, including homo sapiens, canis familiaris, rattus norvegicus, mus musculus, gallus gallus, dani ... | 2006 | 16542450 |