| antarctica | | sponge metagenome | species | 2 | 0 |
| antarctica | | viral metagenome | species | 29 | 0 |
| australia | | human oral metagenome | species | 1 | 0 |
| australia | | viral metagenome | species | 2 | 0 |
| australia | | wallaby gut metagenome | species | 1 | 0 |
| australia | new south wales | insect gut metagenome | species | 1 | 0 |
| austria | lower austria | algae metagenome | species | 1 | 0 |
| canada | | viral metagenome | species | 565 | 0 |
| canada | newfoundland and labrador | mollusc metagenome | species | 53 | 0 |
| chile | atacama region | algae metagenome | species | 2 | 0 |
| chile | coquimbo region | algae metagenome | species | 1 | 0 |
| chile | tarapaca region | algae metagenome | species | 281 | 0 |
| china | | bird metagenome | species | 13 | 0 |
| china | | endophyte metagenome | species | 1 | 0 |
| china | | gut metagenome | species | 1 | 0 |
| china | | pig metagenome | species | 32 | 0 |
| china | chongqing | human oral metagenome | species | 1 | 0 |
| china | fujian | gut metagenome | species | 1 | 0 |
| china | guangdong | fish metagenome | species | 1 | 0 |
| china | guangdong | gut metagenome | species | 1 | 0 |
| china | guangdong | insect metagenome | species | 1 | 0 |
| china | guangdong | mollusc metagenome | species | 1 | 0 |
| china | hubei | gut metagenome | species | 1 | 0 |
| china | inner mongolia | gut metagenome | species | 1 | 0 |
| china | inner mongolia | viral metagenome | species | 2 | 0 |
| china | tibet | gut metagenome | species | 1 | 0 |
| china | zhejiang | algae metagenome | species | 1 | 0 |
| china | zhejiang | insect metagenome | species | 1 | 0 |
| costa rica | | termite gut metagenome | species | 1 | 0 |
| croatia | | fossil metagenome | species | 1 | 0 |
| czech republic | moravian-silesian region | chicken gut metagenome | species | 5 | 0 |
| denmark | central denmark region | sponge metagenome | species | 3 | 0 |
| fiji | | sea squirt metagenome | species | 1 | 0 |
| finland | | human gut metagenome | species | 1 | 0 |
| france | | gut metagenome | species | 1 | 0 |
| france | bretagne region | viral metagenome | species | 14 | 0 |
| france | ile-de-france region | human skin metagenome | species | 3 | 0 |
| french guiana | | termite gut metagenome | species | 2 | 0 |
| french guiana | | termite metagenome | species | 1 | 0 |
| french polynesia | | mollusc metagenome | species | 1 | 0 |
| germany | | viral metagenome | species | 220 | 0 |
| germany | baden-wuerttemberg | respiratory tract metagenome | species | 1 | 0 |
| germany | schleswig-holstein | viral metagenome | species | 1 | 0 |
| greece | | viral metagenome | species | 10 | 0 |
| india | | human gut metagenome | species | 1 | 0 |
| india | | viral metagenome | species | 16 | 0 |
| india | gujarat | algae metagenome | species | 1 | 0 |
| india | west bengal | human gut metagenome | species | 1 | 0 |
| indonesia | special region of yogyakarta | human gut metagenome | species | 1 | 0 |
| iran | alborz province | gut metagenome | species | 8 | 0 |
| japan | | viral metagenome | species | 17 | 0 |
| japan | osaka prefecture | viral metagenome | species | 1 | 0 |
| japan | tokyo prefecture | viral metagenome | species | 2 | 0 |
| japan | toyama prefecture | viral metagenome | species | 59 | 0 |
| libya | tripoli district | human gut metagenome | species | 2 | 0 |
| luxembourg | | termite gut metagenome | species | 1 | 0 |
| madagascar | | human skin metagenome | species | 1 | 0 |
| malaysia | | gut metagenome | species | 3 | 0 |
| malaysia | pahang | gut metagenome | species | 12 | 0 |
| malaysia | selangor | gut metagenome | species | 3 | 0 |
| mexico | | human gut metagenome | species | 27 | 0 |
| mexico | baja california | fish metagenome | species | 1 | 0 |
| mexico | jalisco | phyllosphere metagenome | species | 1 | 0 |
| mexico | morelos | scorpion gut metagenome | species | 1 | 0 |
| netherlands | north holland province | gut metagenome | species | 1 | 0 |
| new zealand | | endophyte metagenome | species | 2 | 0 |
| new zealand | | sponge metagenome | species | 2 | 0 |
| new zealand | auckland | viral metagenome | species | 4 | 0 |
| new zealand | canterbury | viral metagenome | species | 1 | 0 |
| new zealand | manawatu-wanganui | gut metagenome | species | 201605 | 0 |
| new zealand | marlborough | sponge metagenome | species | 6 | 0 |
| norway | troms county | plant metagenome | species | 10 | 0 |
| papua new guinea | | sea squirt metagenome | species | 1 | 0 |
| poland | greater poland province | plant metagenome | species | 1 | 0 |
| slovakia | kosice region | algae metagenome | species | 3 | 0 |
| slovenia | municipality of piran | sponge metagenome | species | 7 | 0 |
| solomon islands | | sea squirt metagenome | species | 1 | 0 |
| south africa | gauteng province | human metagenome | species | 1 | 0 |
| south africa | gauteng province | termite gut metagenome | species | 1 | 0 |
| south korea | | viral metagenome | species | 2 | 0 |
| south korea | jeju province | algae metagenome | species | 1 | 0 |
| spain | | human gut metagenome | species | 9357 | 0 |
| spain | andalusia | gut metagenome | species | 9724 | 0 |
| spain | catalonia | bovine gut metagenome | species | 1 | 0 |
| spain | catalonia | human gut metagenome | species | 2 | 0 |
| spain | valencia | plant metagenome | species | 1 | 0 |
| sweden | | viral metagenome | species | 4051 | 0 |
| switzerland | basel-stadt region | viral metagenome | species | 1 | 0 |
| trinidad and tobago | tobago | coral metagenome | species | 92 | 0 |
| tunisia | | insect gut metagenome | species | 13 | 0 |
| united kingdom | england | chicken gut metagenome | species | 1 | 0 |
| united states | | gut metagenome | species | 32 | 0 |
| united states | | insect gut metagenome | species | 156 | 0 |
| united states | | viral metagenome | species | 1183 | 0 |
| united states | alaska | viral metagenome | species | 1 | 0 |
| united states | california | algae metagenome | species | 15 | 0 |
| united states | california | gut metagenome | species | 1 | 0 |
| united states | california | oral metagenome | species | 3 | 0 |
| united states | california | termite gut metagenome | species | 1 | 0 |
| united states | california | viral metagenome | species | 1 | 0 |
| united states | colorado | algae metagenome | species | 1 | 0 |
| united states | georgia | oral metagenome | species | 1 | 0 |
| united states | hawaii | algae metagenome | species | 16 | 0 |
| united states | illinois | human gut metagenome | species | 17926 | 0 |
| united states | massachusetts | mouse gut metagenome | species | 16 | 0 |
| united states | michigan | wasp metagenome | species | 19 | 0 |
| united states | minnesota | viral metagenome | species | 1 | 0 |
| united states | missouri | gut metagenome | species | 1 | 0 |
| united states | missouri | human skin metagenome | species | 1 | 0 |
| united states | new york | gut metagenome | species | 1 | 0 |
| united states | new york | mouse gut metagenome | species | 2 | 0 |
| united states | oklahoma | gut metagenome | species | 4 | 0 |
| united states | oregon | plant metagenome | species | 1 | 0 |
| united states | pennsylvania | plant metagenome | species | 1 | 0 |
| united states | south carolina | algae metagenome | species | 1 | 0 |
| united states | texas | human metagenome | species | 1 | 0 |
| united states | utah | algae metagenome | species | 103 | 0 |
| united states | vermont | plant metagenome | species | 1 | 0 |
| united states | washington | viral metagenome | species | 1 | 0 |