| australia | | symbiodinium sp. a7a | species | 1 | 0 |
| australia | | symbiodinium sp. a7b | species | 1 | 0 |
| australia | new south wales | symbiodinium sp. cg6.7 | no rank | 1 | 0 |
| australia | new south wales | symbiodinium sp. cg6.8 | no rank | 1 | 0 |
| australia | new south wales | symbiodinium sp. sydd2 | no rank | 1 | 0 |
| australia | new south wales | symbiodinium sp. sydd3 | no rank | 1 | 0 |
| australia | new south wales | symbiodinium sp. syde1 | no rank | 1 | 0 |
| australia | new south wales | symbiodinium sp. sydf7 | no rank | 1 | 0 |
| australia | new south wales | symbiodinium sp. sydf8 | no rank | 1 | 0 |
| australia | queensland | symbiodinium sp. a125 | no rank | 1 | 0 |
| australia | queensland | symbiodinium sp. a126 | no rank | 1 | 0 |
| australia | queensland | symbiodinium sp. a153 | no rank | 1 | 0 |
| australia | queensland | symbiodinium sp. a16 | no rank | 1 | 0 |
| australia | queensland | symbiodinium sp. a3c | species | 1 | 0 |
| australia | queensland | symbiodinium sp. al55.16 | no rank | 1 | 0 |
| australia | queensland | symbiodinium sp. al59.6 | no rank | 1 | 0 |
| australia | queensland | symbiodinium sp. tm2.14 | no rank | 1 | 0 |
| bahamas | | symbiodinium sp. clade a | species | 1 | 0 |
| barbados | | symbiodinium sp. a4 | no rank | 1 | 0 |
| bermuda | | symbiodinium sp. a4 | no rank | 1 | 0 |
| brazil | | symbiodinium sp. clade a | species | 19 | 0 |
| cape verde | maio municipality | symbiodinium sp. a3 | no rank | 1 | 0 |
| cape verde | maio municipality | symbiodinium sp. a4 | no rank | 1 | 0 |
| cape verde | sal municipality | symbiodinium sp. a4 | no rank | 4 | 0 |
| cape verde | sao vicente municipality | symbiodinium sp. a4 | no rank | 19 | 0 |
| colombia | | symbiodinium sp. clade a | species | 11 | 0 |
| colombia | bolivar department | symbiodinium sp. clade a | species | 11 | 0 |
| egypt | red sea governorate | symbiodinium sp. a3 | no rank | 4 | 0 |
| egypt | red sea governorate | symbiodinium sp. clade a | species | 31 | 0 |
| france | | symbiodinium sp. clade a ex anemonia viridis | no rank | 4 | 0 |
| indonesia | | symbiodinium sp. a3 | no rank | 1 | 0 |
| iran | | symbiodinium sp. a1 | no rank | 1 | 0 |
| israel | | symbiodinium sp. clade a ex stylophora pistillata | no rank | 1 | 0 |
| israel | southern district | symbiodinium sp. clade a ex stylophora pistillata | no rank | 10 | 0 |
| jamaica | | symbiodinium sp. clade a | species | 7 | 0 |
| japan | chiba prefecture | symbiodinium sp. clade a ex. pteraeolidia ianthina | species | 7 | 0 |
| japan | chiba prefecture | symbiodinium sp. subtype a1 ex. pteraeolidia ianthina | subspecies | 5 | 0 |
| japan | kagoshima prefecture | symbiodinium sp. amami1a | no rank | 1 | 0 |
| japan | kagoshima prefecture | symbiodinium sp. amami1b | no rank | 1 | 0 |
| japan | kagoshima prefecture | symbiodinium sp. amami1c | no rank | 1 | 0 |
| japan | kagoshima prefecture | symbiodinium sp. amami2a | no rank | 1 | 0 |
| japan | kagoshima prefecture | symbiodinium sp. amami2b | no rank | 1 | 0 |
| japan | kagoshima prefecture | symbiodinium sp. amami2c | no rank | 1 | 0 |
| japan | kagoshima prefecture | symbiodinium sp. five0504 | no rank | 1 | 0 |
| japan | kanagawa prefecture | symbiodinium sp. subtype a1 ex. pteraeolidia ianthina | subspecies | 1 | 0 |
| japan | mie prefecture | symbiodinium sp. clade a ex. pteraeolidia ianthina | species | 3 | 0 |
| japan | okinawa prefecture | symbiodinium sp. clade a | species | 1 | 0 |
| jordan | aqaba governorate | symbiodinium sp. clade a | species | 16 | 0 |
| mauritius | | symbiodinium sp. clade a | species | 1 | 0 |
| palau | | symbiodinium sp. a3 | no rank | 1 | 0 |
| panama | | symbiodinium sp. 719/clade a4 | no rank | 1 | 0 |
| panama | | symbiodinium sp. clade a | species | 2 | 0 |
| panama | | symbiodinium sp. clade a13 | species | 1 | 0 |
| panama | kuna yala province | symbiodinium sp. 719/clade a4 | no rank | 1 | 0 |
| panama | kuna yala province | symbiodinium sp. clade a | species | 8 | 0 |
| panama | kuna yala province | symbiodinium sp. clade a mac-351 | no rank | 1 | 0 |
| south africa | kwazulu-natal province | symbiodinium sp. a1 | no rank | 10 | 0 |
| spain | catalonia | symbiodinium sp. clade a | species | 4 | 0 |
| spain | murcia | symbiodinium sp. clade a | species | 12 | 0 |
| spain | valencia | symbiodinium sp. clade a | species | 4 | 0 |
| u.s. virgin islands | | symbiodinium sp. a3 fitti caribbean | no rank | 2 | 0 |
| united kingdom | | symbiodinium sp. a4 | no rank | 2 | 0 |
| united states | | symbiodinium sp. clade a | species | 5 | 0 |
| united states | florida | symbiodinium sp. 2a/clade a4 | no rank | 6 | 0 |
| united states | florida | symbiodinium sp. a4 | no rank | 2 | 0 |
| united states | florida | symbiodinium sp. clade a | species | 5 | 0 |
| united states | florida | symbiodinium sp. clade a mac-04-503 | no rank | 1 | 0 |
| united states | florida | symbiodinium sp. clade a mac-mf 10.01 | no rank | 1 | 0 |
| united states | florida | symbiodinium sp. clade a3 mac-04-218 sci.01 | no rank | 1 | 0 |
| united states | florida | symbiodinium sp. mf12.5f/clade a3 | no rank | 1 | 0 |
| united states | hawaii | symbiodinium sp. clade a | species | 3 | 0 |
| united states | hawaii | symbiodinium sp. hi-0509 | species | 8 | 0 |
| united states | hawaii | symbiodinium sp. hi-0609 | species | 4 | 0 |
| united states | hawaii | uncultured clade a symbiodinium sp. | no rank | 2 | 0 |
| united states | wisconsin | symbiodinium sp. a4 | no rank | 1 | 0 |
| united states minor outlying islands | johnston atoll | symbiodinium sp. ap1 | no rank | 1 | 0 |
| united states minor outlying islands | johnston atoll | symbiodinium sp. ap2 | no rank | 1 | 0 |