| bahamas | | endozoicomonas gorgoniicola | species | 2 | 0 |
| bahamas | bimini district | endozoicomonas euniceicola | species | 0 | 1 |
| bahamas | bimini district | endozoicomonas montiporae | species | 0 | 1 |
| bahamas | san salvador district | endozoicomonas sp. | species | 1 | 0 |
| brazil | | endozoicomonas sp. cbmai 1097 | species | 1 | 0 |
| brazil | sao paulo | endozoicomonas sp. | species | 4 | 0 |
| china | | endozoicomonas sp. | species | 1 | 0 |
| china | shandong | endozoicomonas elysicola | species | 1 | 0 |
| croatia | | uncultured endozoicomonas sp. | species | 7 | 0 |
| france | | uncultured endozoicomonas sp. | species | 6 | 0 |
| germany | | endozoicomonas sp. | species | 1 | 0 |
| india | | endozoicomonas numazuensis | species | 1 | 0 |
| japan | | endozoicomonas elysicola dsm 22380 | no rank | 31 | 0 |
| japan | okinawa prefecture | endozoicomonas sp. | species | 1 | 0 |
| japan | okinawa prefecture | uncultured endozoicomonas sp. | species | 39 | 0 |
| japan | shizuoka prefecture | endozoicomonas numazuensis | species | 139 | 0 |
| japan | shizuoka prefecture | endozoicomonas numazuensis | species | 1 | 0 |
| malaysia | | endozoicomonas sp. | species | 5 | 0 |
| portugal | | endozoicomonas sp. | species | 1 | 0 |
| south korea | | endozoicomonas atrinae | species | 2 | 0 |
| spain | | uncultured endozoicomonas sp. | species | 1 | 0 |
| spain | andalusia | uncultured endozoicomonas sp. | species | 1 | 0 |
| sweden | | endozoicomonas ascidiicola | species | 144 | 0 |
| sweden | | endozoicomonas sp. av501501 | species | 1 | 0 |
| sweden | | endozoicomonas sp. av501502 | species | 1 | 0 |
| sweden | | endozoicomonas sp. av501503 | species | 1 | 0 |
| sweden | | endozoicomonas sp. av50rt01 | species | 1 | 0 |
| sweden | | endozoicomonas sp. av50rt02 | species | 1 | 0 |
| sweden | | endozoicomonas sp. av50rt03 | species | 1 | 0 |
| sweden | | endozoicomonas sp. av50rt04 | species | 1 | 0 |
| sweden | | endozoicomonas sp. av50rt05 | species | 1 | 0 |
| sweden | | endozoicomonas sp. avma1003 | species | 1 | 0 |
| sweden | | endozoicomonas sp. avma1005 | species | 1 | 0 |
| sweden | | endozoicomonas sp. avma1501 | species | 1 | 0 |
| sweden | | endozoicomonas sp. avmart01 | species | 1 | 0 |
| taiwan | | endozoicomonas | genus | 0 | 1 |
| taiwan | | endozoicomonas atrinae | species | 0 | 1 |
| taiwan | | endozoicomonas elysicola | species | 0 | 1 |
| taiwan | | endozoicomonas montiporae | species | 0 | 1 |
| taiwan | | endozoicomonas montiporae cl-33 | species | 1 | 0 |
| taiwan | | endozoicomonas sp. acr-14 | species | 620 | 0 |
| united states | | endozoicomonas euniceicola | species | 1 | 0 |
| united states | | endozoicomonas sp. | species | 5 | 0 |
| united states | | uncultured endozoicomonas sp. | species | 3 | 0 |
| united states | florida | endozoicomonas euniceicola | species | 1 | 1 |
| united states | florida | endozoicomonas gorgoniicola | species | 1 | 0 |
| united states | florida | endozoicomonas montiporae | species | 0 | 1 |
| united states | florida | uncultured endozoicomonas sp. | species | 38 | 0 |
| united states | north carolina | endozoicomonas sp. (ex bugula neritina ab1) | species | 273 | 0 |