| angola | | cassava geminivirus | species | 1 | 0 |
| antigua and barbuda | | tomato yellow mosaic virus | species | 1 | 0 |
| argentina | | bean bushy stunt virus | species | 4 | 0 |
| argentina | | grapevine begomovirus a | species | 2 | 0 |
| argentina | | pepper blistering leaf virus | species | 8 | 0 |
| argentina | | sida brazil virus | species | 1 | 0 |
| argentina | | tomato vein clearing leaf deformation virus | species | 4 | 0 |
| argentina | jujuy province | sida brazil virus | species | 1 | 0 |
| australia | | cotton leaf curl burewala virus | species | 1 | 0 |
| bangladesh | | synedrella leaf curl virus | species | 1 | 0 |
| barbados | | bean mosaic crinkle barbados virus | species | 1 | 0 |
| barbados | christ church parish | bean mosaic crinkle barbados virus | species | 1 | 0 |
| brazil | | cleome affinis begomovirus - brazil | species | 1 | 0 |
| brazil | | cleome bright yellow mosaic virus | species | 2 | 0 |
| brazil | | cleome yellow mosaic virus | species | 1 | 0 |
| brazil | | cnidoscolus blistering yellow mosaic virus | species | 1 | 0 |
| brazil | | corchorus mottle virus | species | 2 | 0 |
| brazil | | macroptilium bright yellow interveinal virus | species | 2 | 0 |
| brazil | | malvaviscus yellow mosaic virus | species | 8 | 0 |
| brazil | | sida yellow golden mosaic virus | species | 4 | 0 |
| brazil | | sweet potato begomovirus | species | 9 | 0 |
| brazil | | sweet potato golden vein associated virus | species | 2 | 0 |
| brazil | | sweet potato mosaic associated virus | species | 1 | 0 |
| brazil | | tomato crinkle leaf yellows virus | species | 2 | 0 |
| brazil | | tomato crinkle yellow leaf virus | species | 1 | 0 |
| brazil | | tomato interveinal chlorosis virus-2 | species | 2 | 0 |
| brazil | | tomato mild leaf curl virus - [uberlandia] | species | 1 | 0 |
| brazil | | tomato mosaic severe dwarf virus | species | 4 | 0 |
| brazil | | tomato yellow leaf deformation dwarf virus | species | 4 | 0 |
| brazil | bahia | passion flower little leaf mosaic virus | species | 2 | 0 |
| brazil | bahia | sweet potato golden vein associated virus | species | 2 | 0 |
| brazil | bahia | sweet potato leaf curl spain virus | species | 1 | 0 |
| brazil | federal district | tomato mosaic severe dwarf virus | species | 2 | 0 |
| brazil | goias | tomato yellow net virus | species | 12 | 0 |
| brazil | mato grosso do sul | sida brazil virus | species | 2 | 0 |
| brazil | minas gerais | tomato golden net virus | species | 1 | 0 |
| brazil | parana | tomato yellow mosaic virus | species | 1 | 0 |
| brazil | rondonia | sweet potato golden vein associated virus | species | 3 | 0 |
| brazil | rondonia | sweet potato leaf curl spain virus | species | 1 | 0 |
| brazil | sao paulo | sweet potato leaf curl spain virus | species | 0 | 1 |
| brazil | sergipe | sweet potato golden vein associated virus | species | 1 | 0 |
| cameroon | | begomovirus sp. | species | 2 | 0 |
| cameroon | | clerodendron leaf curl virus | species | 1 | 0 |
| cameroon | | okra leaf curl virus | species | 1 | 0 |
| cameroon | | okra leaf curl virus-[cameroon] | no rank | 1 | 0 |
| cameroon | | tomato leaf curl fontem virus | species | 3 | 0 |
| cameroon | south-west region | tomato leaf curl cameroon virus | species | 1 | 0 |
| cameroon | south-west region | tomato leaf curl cameroon virus - [cameroon:buea:okra:2008] | no rank | 4 | 0 |
| cameroon | west region | tomato leaf curl cameroon virus | species | 0 | 1 |
| cameroon | west region | tomato leaf curl togo virus | species | 0 | 1 |
| china | | ageratum yellow vein china virus | species | 1 | 0 |
| china | | ageratum yellow vein taiwan virus | species | 1 | 0 |
| china | | sweet potato leaf curl china sichuan virus | species | 1 | 0 |
| china | | sweet potato leaf curl japan virus | species | 7 | 0 |
| china | | sweet potato leaf curl shandong virus 2 | species | 1 | 0 |
| china | | sweet potato leaf curl shanghai virus | species | 10 | 0 |
| china | | tobacco leaf curl virus | species | 1 | 0 |
| china | | yam yellow spot mosaic virus | species | 8 | 0 |
| china | guangdong | ageratum yellow vein china virus | species | 0 | 2 |
| china | guangxi | ageratum yellow vein china virus | species | 22 | 1 |
| china | guangxi | ageratum yellow vein china virus - [g66] | no rank | 1 | 0 |
| china | guangxi | ageratum yellow vein china virus - [g67] | no rank | 1 | 0 |
| china | guangxi | ageratum yellow vein china virus - [g68] | no rank | 1 | 0 |
| china | guangxi | ageratum yellow vein china virus - [g69] | no rank | 1 | 0 |
| china | guangxi | ageratum yellow vein china virus - [g86] | no rank | 1 | 0 |
| china | guangxi | ageratum yellow vein china virus - [g95] | no rank | 1 | 0 |
| china | guangxi | ageratum yellow vein china virus - [g96] | no rank | 1 | 0 |
| china | guangxi | ageratum yellow vein china virus - [g98] | no rank | 1 | 0 |
| china | guangxi | ageratum yellow vein china virus - ox1 | species | 2 | 0 |
| china | guangxi | tomato leaf curl china virus - ox2 | species | 2 | 0 |
| china | hainan | ageratum yellow vein china virus | species | 3 | 0 |
| china | hainan | ageratum yellow vein china virus - [hn10] | no rank | 1 | 0 |
| china | hainan | ageratum yellow vein china virus - [hn11] | no rank | 1 | 0 |
| china | hainan | ageratum yellow vein china virus - [hn12] | no rank | 1 | 0 |
| china | hainan | ageratum yellow vein china virus - [hn13] | no rank | 1 | 0 |
| china | hainan | ageratum yellow vein china virus - [hn14] | no rank | 1 | 0 |
| china | hainan | ageratum yellow vein china virus - [hn17] | no rank | 1 | 0 |
| china | hainan | ageratum yellow vein china virus - [hn19] | no rank | 1 | 0 |
| china | hainan | ageratum yellow vein china virus - [hn2.19] | no rank | 1 | 0 |
| china | hainan | ageratum yellow vein china virus - [hn20] | no rank | 1 | 0 |
| china | hainan | ageratum yellow vein china virus - [hn22] | no rank | 1 | 0 |
| china | hainan | ageratum yellow vein china virus - [hn23] | no rank | 1 | 0 |
| china | hainan | ageratum yellow vein china virus - [hn24] | no rank | 1 | 0 |
| china | hainan | ageratum yellow vein china virus - [hn9] | no rank | 1 | 0 |
| china | henan | sweet potato leaf curl china sichuan virus | species | 0 | 1 |
| china | sichuan | sweet potato leaf curl china sichuan virus | species | 0 | 2 |
| china | sichuan | sweet potato leaf curl china sichuan virus-[china:sichuan15:2012] | no rank | 1 | 0 |
| china | sichuan | tomato geminivirus | species | 1 | 0 |
| china | yunnan | ageratum yellow vein china virus | species | 46 | 0 |
| china | yunnan | bidens pilosa leaf crumple virus | species | 17 | 0 |
| china | yunnan | chili leaf curl pakistan virus | species | 1 | 0 |
| china | yunnan | clerodendron golden mosaic virus | species | 2 | 0 |
| china | yunnan | ramie yellow mosaic virus | species | 4 | 0 |
| china | yunnan | synedrella leaf curl virus | species | 11 | 0 |
| china | yunnan | tobacco leaf curl virus | species | 5 | 1 |
| china | yunnan | tomato geminivirus | species | 1 | 0 |
| china | yunnan | tomato leaf curl chuxiong virus | species | 34 | 0 |
| china | yunnan | tomato leaf curl yunnan virus | species | 2 | 1 |
| colombia | | hybanthus yellow mosaic virus | species | 4 | 0 |
| colombia | | tomato begomovirus colombia | species | 3 | 0 |
| colombia | | tomato yellow mosaic virus | species | 1 | 0 |
| colombia | | verbena mottle virus | species | 4 | 0 |
| colombia | cundinamarca department | rhynchosia golden mosaic colombia virus | species | 3 | 0 |
| costa rica | | squash yellow mottle virus | species | 3 | 0 |
| costa rica | alajuela province | calopogonium golden mosaic virus | species | 1 | 0 |
| costa rica | alajuela province | squash yellow mottle virus | species | 2 | 0 |
| costa rica | guanacaste province | squash yellow mottle virus | species | 1 | 0 |
| costa rica | puntarenas province | calopogonium golden mosaic virus | species | 2 | 0 |
| cuba | | capsicum begomovirus cuba/2007 | species | 1 | 0 |
| cuba | | jatropha gossypifolia begomovirus | species | 1 | 0 |
| cuba | | tobacco begomovirus - [cuba:granma:2007] | species | 1 | 0 |
| cuba | | tomato yellow distortion leaf virus | species | 6 | 0 |
| cuba | granma province | tomato begomovirus - [cuba:granma:2007] | species | 1 | 0 |
| dominican republic | | boerhavia golden mosaic virus | species | 8 | 0 |
| dominican republic | | macroptilium golden yellow mosaic virus | species | 4 | 0 |
| dominican republic | | tomato geminivirus | species | 1 | 0 |
| ecuador | | muntingia yellow spot virus | species | 4 | 0 |
| egypt | | okra curl leaf virus | species | 1 | 0 |
| guadeloupe | | potato yellow mosaic trinidad virus-[trinidad & tobago] | no rank | 0 | 1 |
| guatemala | | vem begomovirus 1 | species | 3 | 0 |
| guatemala | | vem begomovirus 2 | species | 1 | 0 |
| guatemala | | vem begomovirus 3 | species | 4 | 0 |
| guatemala | | vem begomovirus 4 | species | 1 | 0 |
| honduras | comayagua department | tomato mild yellow mottle virus - [honduras 96 - h5kw] | species | 1 | 0 |
| india | | acalypha yellow mosaic virus - [barrackpore] | no rank | 1 | 0 |
| india | | alternanthera leaf curl virus | species | 1 | 0 |
| india | | begomovirus sp. | species | 8 | 0 |
| india | | bhendi yellow vein delhi virus (new delhi:2007) | no rank | 1 | 0 |
| india | | bhendi yellow vein delhi virus [2004:new delhi] | no rank | 2 | 0 |
| india | | calotropis yellow vein mosiac virus | species | 1 | 0 |
| india | | cassava geminivirus | species | 1 | 0 |
| india | | cherry tomato leaf curl virus | no rank | 1 | 0 |
| india | | chili leaf curl bhatinda virus | species | 1 | 0 |
| india | | chilli leaf curl bijnour virus-india | species | 1 | 0 |
| india | | clerodendron golden mosaic virus | species | 1 | 0 |
| india | | clerodendron yellow mosaic virus - [barrackpore] | species | 1 | 0 |
| india | | coccinia mosaic virudhunagar virus | species | 1 | 0 |
| india | | cotton leaf curl burewala virus | species | 27 | 0 |
| india | | cotton leaf curl burewala virus-[in:sriganganagar:2005] | no rank | 1 | 0 |
| india | | cotton leaf curl rajasthan virus | species | 7 | 0 |
| india | | cotton leaf curl rajasthan virus - india [india:sri-ganganagar:2008] | no rank | 1 | 0 |
| india | | cotton leaf curl rajasthan virus-[in:abohar:2003] | no rank | 1 | 0 |
| india | | cotton leaf curl rajasthan virus-[in:bathinda1:2005] | no rank | 1 | 0 |
| india | | cotton leaf curl rajasthan virus-[in:fazilka:2005] | no rank | 1 | 0 |
| india | | cotton leaf curl rajasthan virus-[in:sriganganagar:2005] | no rank | 1 | 0 |
| india | | cotton leaf curl virus | species | 52 | 0 |
| india | | cotton leaf curl virus lko-2 | species | 1 | 0 |
| india | | crotalaria juncea begomovirus | species | 1 | 0 |
| india | | croton yellow vein mosaic virus-india | species | 1 | 0 |
| india | | croton yellow vein virus | species | 1 | 0 |
| india | | cyamopsis tetragonoloba leaf curl virus | species | 1 | 0 |
| india | | gaillardia yellow mosaic begomovirus | species | 1 | 0 |
| india | | guar begomovirus jak-2004 | no rank | 1 | 0 |
| india | | ipomoea yellow vein virus | species | 1 | 0 |
| india | | jatropha mosaic lucknow virus | species | 1 | 0 |
| india | | jute yellow mosaic virus | species | 1 | 0 |
| india | | luffa cylindrica yellow mosaic bhatinda virus | species | 2 | 0 |
| india | | malachra yellow mosaic virus | species | 2 | 0 |
| india | | malachra yellow vein mosaic virus - india | species | 1 | 0 |
| india | | melia leaf curl virus | species | 2 | 0 |
| india | | mentha virus india bkb-2008 | species | 1 | 0 |
| india | | mulberry mosaic virus | species | 1 | 0 |
| india | | ocimum leaf curl virus | species | 1 | 0 |
| india | | okra leaf curl virus | species | 2 | 0 |
| india | | papaya yellow leaf curl virus | no rank | 1 | 0 |
| india | | pepper leaf curl bangladesh virus-india | species | 1 | 0 |
| india | | pepper leaf curl varanasi virus | species | 1 | 0 |
| india | | pigeon pea mosaic virus | species | 1 | 0 |
| india | | ramie yellow mosaic virus | species | 1 | 0 |
| india | | raphanus sativus leaf curl bhatinda virus | species | 1 | 0 |
| india | | spinacia oleracea leaf curl bhatinda virus | species | 1 | 0 |
| india | | tobacco leaf curl lucknow virus | species | 1 | 0 |
| india | | tobacco leaf curl virus | species | 3 | 0 |
| india | | tomato leaf curl bhatinda virus | species | 1 | 0 |
| india | | tomato leaf curl gandhinagar virus | species | 2 | 0 |
| india | | tomato leaf curl ranchi virus | species | 2 | 0 |
| india | | whitefly-transmitted indian begomovirus | species | 14 | 0 |
| india | | withania mosaic india virus-[lucknow] | no rank | 1 | 0 |
| india | andaman and nicobar islands | synedrella leaf curl virus-[portblair:andaman] | species | 2 | 0 |
| india | andhra pradesh | chilli leaf curl ahmedabad virus-india | species | 1 | 0 |
| india | andhra pradesh | jatropha mosaic india virus-chilli pepper | no rank | 1 | 0 |
| india | andhra pradesh | okra leaf curl virus | species | 1 | 0 |
| india | andhra pradesh | papaya yellow leaf curl virus | no rank | 1 | 0 |
| india | andhra pradesh | whitefly-transmitted indian begomovirus | species | 1 | 0 |
| india | assam | tomato leaf curl ranchi virus | species | 1 | 0 |
| india | bihar | hibiscus leaf curl virus | species | 1 | 0 |
| india | bihar | tomato leaf curl joydebpur virus-india [india/patna/chilli/2008] | no rank | 1 | 0 |
| india | bihar | tomato leaf curl pakistan virus | species | 1 | 0 |
| india | gujarat | chilli leaf curl ahmedabad virus-india [india/ahmedabad/2014] | species | 2 | 0 |
| india | gujarat | cotton leaf curl rajasthan virus | species | 0 | 1 |
| india | gujarat | cotton leaf curl rajasthan virus-bangalore | no rank | 0 | 1 |
| india | gujarat | okra leaf curl india virus | species | 1 | 0 |
| india | gujarat | tomato leaf curl ranchi virus | species | 0 | 1 |
| india | haryana | begomovirus sp. cr-2004-1 | no rank | 2 | 0 |
| india | haryana | cotton leaf curl burewala virus | species | 2 | 1 |
| india | haryana | cotton leaf curl rajasthan virus | species | 9 | 0 |
| india | haryana | cotton leaf curl rajasthan virus - [india:hisa:2003] | no rank | 1 | 0 |
| india | haryana | cotton leaf curl rajasthan virus - [sirsa:04] | no rank | 1 | 0 |
| india | haryana | cotton leaf curl virus | species | 11 | 1 |
| india | haryana | croton yellow vein mosaic hisar virus | species | 1 | 0 |
| india | haryana | hibiscus leaf curl virus | species | 1 | 0 |
| india | haryana | okra leaf curl india virus [india:sonipat el14a:2006] | no rank | 2 | 0 |
| india | haryana | tomato leaf curl sirsa virus | species | 1 | 0 |
| india | himachal pradesh | mirabilis leaf curl india virus | species | 1 | 0 |
| india | karnataka | begomovirus sp. cr-2004-2 | no rank | 1 | 0 |
| india | karnataka | begomovirus sp. cr-2004-4 | no rank | 1 | 0 |
| india | karnataka | cotton leaf curl rajasthan virus-bangalore | no rank | 3 | 0 |
| india | karnataka | jatropha yellow mosaic india virus | species | 0 | 1 |
| india | karnataka | passion fruit leaf curl virus | species | 13 | 0 |
| india | karnataka | sunflower leaf curl virus | species | 1 | 0 |
| india | karnataka | tobacco leaf curl virus | species | 4 | 0 |
| india | karnataka | tomato leaf curl karnataka virus-india [india/banglore/chilli/2008] | species | 1 | 0 |
| india | kerala | mulberry mosaic virus | species | 1 | 0 |
| india | madhya pradesh | jatropha yellow mosaic india virus | species | 3 | 1 |
| india | madhya pradesh | tomato geminivirus | species | 1 | 0 |
| india | madhya pradesh | whitefly-transmitted indian begomovirus | species | 1 | 0 |
| india | maharashtra | chilli leaf curl salem virus-india [india/salem/2008] | species | 1 | 0 |
| india | maharashtra | tomato leaf curl mumbai virus | species | 2 | 0 |
| india | maharashtra | whitefly-transmitted indian begomovirus | species | 1 | 0 |
| india | national capital territory of delhi | chrysanthemum indicum yellow vein delhi virus | species | 1 | 0 |
| india | national capital territory of delhi | clerodendrum inerme yellow vein mosaic delhi virus | species | 1 | 0 |
| india | national capital territory of delhi | cotton leaf curl burewala virus | species | 3 | 0 |
| india | national capital territory of delhi | cotton leaf curl rajasthan virus | species | 4 | 1 |
| india | national capital territory of delhi | cotton leaf curl rajasthan virus - [india:new delhi:2003] | no rank | 1 | 0 |
| india | national capital territory of delhi | cotton leaf curl virus | species | 5 | 0 |
| india | national capital territory of delhi | tomato leaf curl ranchi virus | species | 0 | 1 |
| india | punjab | chili leaf curl bhatinda virus | species | 1 | 0 |
| india | punjab | cotton leaf curl burewala virus | species | 9 | 1 |
| india | punjab | cotton leaf curl rajasthan virus | species | 1 | 0 |
| india | punjab | cotton leaf curl rajasthan virus - [india:abohar:2003] | no rank | 4 | 0 |
| india | punjab | cotton leaf curl virus | species | 9 | 0 |
| india | punjab | luffa cylindrica yellow mosaic bhatinda virus | species | 2 | 0 |
| india | punjab | melia leaf curl virus | species | 2 | 0 |
| india | punjab | raphanus sativus leaf curl bhatinda virus | species | 1 | 0 |
| india | punjab | spinacia oleracea leaf curl bhatinda virus | species | 1 | 0 |
| india | punjab | tomato leaf curl bhatinda virus | species | 1 | 0 |
| india | rajasthan | alternanthera leaf curl lakshmangarh virus | species | 1 | 0 |
| india | rajasthan | alternanthera leaf curl virus | species | 1 | 0 |
| india | rajasthan | bougainvillea leaf curl virus | species | 1 | 0 |
| india | rajasthan | calendula officinalis yellow vein lakshmangarh virus | species | 1 | 0 |
| india | rajasthan | citrus limon leaf curl sikar virus | species | 1 | 0 |
| india | rajasthan | cotton leaf curl burewala virus | species | 4 | 1 |
| india | rajasthan | cotton leaf curl rajasthan virus | species | 4 | 3 |
| india | rajasthan | cotton leaf curl rajasthan virus-bangalore | no rank | 0 | 1 |
| india | rajasthan | cotton leaf curl virus | species | 2 | 1 |
| india | rajasthan | croton sparsiflorus yellow vein lakshmangarh virus | species | 1 | 0 |
| india | rajasthan | cyamopsis tetragonoloba leaf curl sikar virus | species | 1 | 0 |
| india | rajasthan | duranta erecta leaf curl lakshmangarh virus | species | 1 | 0 |
| india | rajasthan | jasminum sambac leaf curl lakshmangarh virus | species | 1 | 0 |
| india | rajasthan | jatropha leaf crumple india virus [j. curcas: jodhpur] | no rank | 4 | 0 |
| india | rajasthan | jatropha leaf crumple virus | species | 2 | 0 |
| india | rajasthan | justicia leaf curl virus | species | 1 | 0 |
| india | rajasthan | marigold leaf curl virus | species | 1 | 0 |
| india | rajasthan | millingtonia hortensis yellow vein mosaic lakshmangarh virus | species | 1 | 0 |
| india | rajasthan | mimosa yellow vein virus | species | 1 | 0 |
| india | rajasthan | solanum leaf curl lakshmangarh virus | species | 1 | 0 |
| india | rajasthan | sonchus yellow mosaic virus | species | 1 | 0 |
| india | rajasthan | tecoma stans leaf curl virus | species | 1 | 0 |
| india | rajasthan | verbesina encelioides yellow vein lakshmangarh virus | species | 1 | 0 |
| india | rajasthan | whitefly-transmitted indian begomovirus | species | 1 | 0 |
| india | rajasthan | withania mosaic india virus-[rajasthan] | no rank | 253 | 0 |
| india | sikkim | cotton leaf curl burewala virus | species | 2 | 0 |
| india | tamil nadu | chayote enation yellow mosaic virus | species | 537 | 0 |
| india | tamil nadu | pepper leaf curl bangladesh virus-india [india/coimbatore/2008] | no rank | 1 | 0 |
| india | tamil nadu | whitefly-transmitted indian begomovirus | species | 1 | 0 |
| india | uttar pradesh | calendulla yellow net virus | species | 1 | 0 |
| india | uttar pradesh | cotton leaf curl virus | species | 1 | 0 |
| india | uttar pradesh | cucurbita pepo begomovirus - gorakhpur | species | 2 | 0 |
| india | uttar pradesh | jatropha mosaic lucknow virus | species | 2 | 0 |
| india | uttar pradesh | okra leaf curl virus-[india:mau:2012] | no rank | 3 | 0 |
| india | uttar pradesh | papaver enation virus | species | 1 | 0 |
| india | uttar pradesh | papaya severe leaf curl virus | species | 573 | 0 |
| india | uttar pradesh | pepper leaf curl bangladesh virus-india | species | 0 | 1 |
| india | uttar pradesh | whitefly-transmitted indian begomovirus | species | 1 | 0 |
| india | west bengal | acalypha yellow mosaic siliguri virus | species | 1 | 0 |
| india | west bengal | croton yellow vein virus | species | 1 | 0 |
| india | west bengal | sweet potato leaf curl bengal virus | species | 1 | 0 |
| india | west bengal | sweet potato leaf curl bengal virus - [india:west bengal:2008] | no rank | 1 | 0 |
| india | west bengal | tomato leaf curl joydebpur virus-india [india/kolkata/chilli/2007] | no rank | 2 | 0 |
| indonesia | central java province | ageratum yellow vein china virus | species | 2 | 0 |
| indonesia | east java province | tobacco leaf curl indonesia virus | species | 7 | 0 |
| iran | | melon begomovirus | species | 1 | 0 |
| iran | | parsley yellow leaf curl virus | species | 1 | 0 |
| italy | sardinia autonomous region | tomato geminivirus | species | 0 | 1 |
| italy | sicily autonomous region | tomato geminivirus | species | 0 | 1 |
| italy | sicily autonomous region | tylcaxv-sic2-[it:sic2/5:04] | species | 1 | 0 |
| italy | sicily autonomous region | tylcv/tylcsv recombinant ragusa/2004 | species | 7 | 0 |
| ivory coast | | tomato interveinal yellowing virus | species | 2 | 0 |
| jamaica | | sida golden buckup virus | species | 2 | 0 |
| jamaica | | sida golden buckup virus - [enfield strain] | no rank | 1 | 0 |
| jamaica | saint thomas parish | tomato yellow distortion leaf virus | species | 0 | 1 |
| japan | kagoshima prefecture | tobacco leaf curl virus | species | 1 | 0 |
| kenya | | begomovirus sp. | species | 15 | 0 |
| madagascar | anosy region | bean leaf curl madagascar virus | species | 1 | 0 |
| madagascar | atsimo-andrefana region | tomato begomovirus tulear 1 | species | 11 | 0 |
| madagascar | diana region | tomato leaf curl antsiranana virus | species | 1 | 0 |
| madagascar | menabe region | tomato begomovirus tulear 1 | species | 18 | 0 |
| madagascar | menabe region | tomato leaf curl antsiranana virus | species | 1 | 0 |
| mayotte | | tomato leaf curl mayotte virus | species | 121 | 0 |
| mayotte | dembeni | tomato leaf curl mayotte virus | species | 2 | 0 |
| mexico | | begomovirus sp. | species | 11 | 0 |
| mexico | | cucumber chlorotic leaf virus | species | 4 | 0 |
| mexico | | insect-associated begomovirus 4 | species | 1 | 0 |
| mexico | | jamaica yellow mosaic virus | species | 2 | 0 |
| mexico | | okra mosaic mexico virus | species | 1 | 0 |
| mexico | | okra yellow mottle virus | species | 2 | 0 |
| mexico | | papaya begomovirus 1 | species | 1 | 0 |
| mexico | | papaya begomovirus 2 | species | 1 | 0 |
| mexico | | sida chlorotic leaf virus | species | 4 | 0 |
| mexico | | tobacco apical stunt virus | species | 3 | 0 |
| mexico | | tobacco15 geminivirus | species | 2 | 0 |
| mexico | baja california sur | tomato chino calandrio baja california virus | species | 15 | 0 |
| mexico | chiapas | tobacco apical stunt virus | species | 0 | 1 |
| mexico | chiapas | tobacco leaf curl virus | species | 0 | 1 |
| mexico | guanajuato | bean latent virus | species | 1 | 0 |
| mexico | guerrero | jamaica yellow mosaic virus | species | 2 | 0 |
| mexico | jalisco | bean latent virus | species | 5 | 0 |
| mexico | morelos | sida acuta iguala virus | species | 1 | 0 |
| mexico | nayarit | bean latent virus | species | 9 | 0 |
| mexico | queretaro arteaga | sida interveinal bright yellow virus | species | 12 | 0 |
| mexico | yucatan | hibiscus variegation virus | species | 0 | 1 |
| mexico | yucatan | papaya golden mosaic virus | species | 1 | 1 |
| mexico | yucatan | potato yellow mosaic trinidad virus | species | 0 | 1 |
| mexico | yucatan | potato yellow mosaic trinidad virus-[trinidad & tobago] | no rank | 0 | 1 |
| mexico | yucatan | tobacco apical stunt mexico virus - [rhynchosia isolate] | no rank | 1 | 0 |
| mexico | yucatan | tobacco apical stunt virus | species | 0 | 1 |
| mozambique | | cassava geminivirus | species | 11 | 0 |
| myanmar | | chili leaf curl pakistan virus | species | 1 | 0 |
| namibia | | tomato leaf curl kunene virus | species | 1 | 0 |
| nepal | | malvastrum yellow vein chitwan virus | species | 2 | 0 |
| nicaragua | chontales department | tomato geminivirus | species | 1 | 0 |
| nicaragua | managua department | tomato geminivirus | species | 4 | 0 |
| nicaragua | managua department | tomato leaf curl las playitas virus | species | 1 | 0 |
| nigeria | | soybean mottle mosaic virus | species | 1 | 0 |
| oman | | tomato leaf curl barka virus | species | 13 | 0 |
| oman | al batinah north governorate | tomato leaf curl barka virus | species | 6 | 0 |
| pakistan | | chenopodium leaf distortion virus | species | 1 | 0 |
| pakistan | | cherry tomato leaf curl virus | no rank | 2 | 0 |
| pakistan | | chili leaf curl pakistan virus | species | 1 | 0 |
| pakistan | | cotton leaf curl burewala virus | species | 8 | 0 |
| pakistan | | cotton leaf curl burewala virus-[pakistan:faisalabad:2007] | no rank | 1 | 0 |
| pakistan | | cotton leaf curl khokran virus | species | 7 | 0 |
| pakistan | | cotton leaf curl kokhran virus-burewala | no rank | 50 | 0 |
| pakistan | | cotton leaf curl rajasthan virus | species | 2 | 0 |
| pakistan | | cotton leaf curl shadadpur virus | species | 1 | 0 |
| pakistan | | cotton leaf curl virus | species | 32 | 0 |
| pakistan | | croton yellow vein virus | species | 1 | 0 |
| pakistan | | gossypium punctatum mild leaf curl virus | species | 8 | 0 |
| pakistan | | gossypium punctatum mild leaf curl virus [gossypium gossypioides] | no rank | 1 | 0 |
| pakistan | | gossypium punctatum mild leaf curl virus [gossypium lobatum] | no rank | 1 | 0 |
| pakistan | | gossypium punctatum mild leaf curl virus [gossypium mustelinum] | no rank | 1 | 0 |
| pakistan | | gossypium punctatum mild leaf curl virus [gossypium somalense] | no rank | 1 | 0 |
| pakistan | | gossypium punctatum mild leaf curl virus [gossypium stocksii] | no rank | 1 | 0 |
| pakistan | | tomato leaf curl pakistan virus-[pakistan:faisalabad:2007] | no rank | 1 | 0 |
| pakistan | islamabad capital territory | cestrum leaf curl islamabad virus | species | 1 | 0 |
| pakistan | khyber pakhtunkhwa province | cotton leaf curl burewala virus | species | 8 | 0 |
| pakistan | khyber pakhtunkhwa province | cotton leaf curl rajasthan virus | species | 1 | 0 |
| pakistan | khyber pakhtunkhwa province | tomato leaf curl pakistan virus | species | 2 | 0 |
| pakistan | punjab province | bell pepper leaf curl virus | species | 1 | 0 |
| pakistan | punjab province | cherry tomato leaf curl virus | no rank | 12 | 0 |
| pakistan | punjab province | chili leaf curl pakistan virus | species | 1 | 0 |
| pakistan | punjab province | cotton leaf curl burewala virus | species | 213 | 1 |
| pakistan | punjab province | cotton leaf curl burewala virus-[pakistan:faisalabad:2007] | no rank | 1 | 0 |
| pakistan | punjab province | cotton leaf curl rajasthan virus | species | 2 | 0 |
| pakistan | punjab province | cotton leaf curl virus | species | 0 | 2 |
| pakistan | punjab province | cotton leaf curl virus-[pakistan:multan] | no rank | 13 | 0 |
| pakistan | punjab province | cotton leaf curl virus-1 (sonchus) | no rank | 1 | 0 |
| pakistan | punjab province | croton yellow vein virus | species | 2 | 0 |
| pakistan | punjab province | gossypium punctatum mild leaf curl virus | species | 6 | 0 |
| pakistan | punjab province | melon leaf curl virus | species | 1 | 0 |
| pakistan | punjab province | tomato leaf curl pakistan virus-[pakistan:faisalabad:2007] | no rank | 1 | 0 |
| pakistan | sindh province | cotton leaf curl burewala virus | species | 2 | 0 |
| pakistan | sindh province | cotton leaf curl shadadpur virus | species | 59 | 0 |
| pakistan | sindh province | cotton leaf curl virus | species | 0 | 1 |
| philippines | | ageratum yellow vein china virus | species | 1 | 0 |
| philippines | | tomato leaf curl cotabato virus | species | 3 | 0 |
| philippines | autonomous region in muslim mindanao | ageratum yellow vein china virus | species | 1 | 0 |
| philippines | autonomous region in muslim mindanao | tomato leaf curl cotabato virus | species | 3 | 0 |
| philippines | davao region | ageratum yellow vein china virus | species | 2 | 0 |
| puerto rico | | macroptilium mosaic virus | species | 3 | 0 |
| puerto rico | | pigeon pea yellow mosaic virus | species | 1 | 0 |
| puerto rico | | rhynchosia mosaic virus | species | 4 | 0 |
| puerto rico | | vem begomovirus 5 | species | 7 | 0 |
| puerto rico | | vem begomovirus 6 | species | 3 | 0 |
| puerto rico | villalba | pigeon pea yellow mosaic virus | species | 1 | 0 |
| saudi arabia | | tomato yellow leaf curl saudi virus | species | 2 | 0 |
| south africa | | cassava geminivirus | species | 13 | 0 |
| south korea | | sweet potato golden vein associated virus | species | 1 | 0 |
| south korea | | tobacco leaf curl virus | species | 16 | 0 |
| south korea | gyeonggi province | sweet potato golden vein associated virus | species | 9 | 0 |
| spain | | ipomoea yellow vein virus | species | 4 | 0 |
| spain | | sweet potato begomovirus | species | 1 | 0 |
| spain | | sweet potato leaf curl lanzarote virus | species | 3 | 0 |
| spain | | sweet potato leaf curl spain virus | species | 4 | 0 |
| spain | | vem begomovirus 7 | species | 11 | 0 |
| sri lanka | | okra yellow vein mosaic virus tj-2016a | species | 7 | 0 |
| swaziland | | cassava geminivirus | species | 3 | 0 |
| taiwan | | ageratum yellow vein taiwan virus | species | 1 | 0 |
| taiwan | | ageratum yellow vein taiwan virus-[taiwan] | no rank | 1 | 0 |
| taiwan | | ageratum yellow vein taiwan virus-[taiwanpd] | no rank | 1 | 0 |
| taiwan | taiwan municipality | ageratum yellow vein taiwan virus | species | 1 | 0 |
| taiwan | taiwan municipality | ageratum yellow vein taiwan virus-[taiwan] | no rank | 1 | 0 |
| taiwan | taiwan municipality | hibiscus vein enation virus | species | 18 | 0 |
| thailand | | ageratum yellow vein china virus | species | 1 | 0 |
| thailand | | begomovirus loofah/khon kaen2008/feb2008 | species | 1 | 0 |
| thailand | | begomovirus pumpkin/suphan buri/mar2008 | species | 1 | 0 |
| thailand | | begomovirus wax gourd/suphan buri2008/feb2008 | species | 1 | 0 |
| thailand | | eggplant golden mosaic virus | species | 18 | 0 |
| thailand | | malvastrum coromandelianum yellow vein virus | species | 1 | 0 |
| thailand | | squash leaf curl thailand virus | species | 1 | 0 |
| thailand | | tobacco leaf curl virus | species | 2 | 0 |
| thailand | khon kaen province | foetid cassia leaf curl virus-[thailand] | species | 2 | 0 |
| thailand | surat thani province | emilia sonchifolia yellow vein thailand virus | species | 2 | 0 |
| trinidad and tobago | | calopogonium mucunoides begomovirus - trinidad | species | 2 | 0 |
| trinidad and tobago | | malachra alceifolia begomovirus - trinidad | species | 2 | 0 |
| trinidad and tobago | | merremia aegyptia begomovirus - trinidad | species | 2 | 0 |
| trinidad and tobago | | rhynchosia minima trinidad virus | species | 1 | 0 |
| trinidad and tobago | | sida rhombifolia trinidad virus | species | 1 | 0 |
| turkey | | sweet potato golden vein associated virus | species | 2 | 0 |
| uganda | | ocimum golden mosaic virus | species | 5 | 0 |
| uganda | | ocimum mosaic virus | species | 3 | 0 |
| uganda | | ocimum yellow vein virus | species | 8 | 0 |
| united states | | sweet potato golden vein associated virus | species | 2 | 0 |
| united states | florida | bean mosaic florida virus | species | 1 | 0 |
| united states | florida | chenopodium leaf curl virus [vem] | species | 1 | 0 |
| united states | florida | whitefly vem 1 begomovirus | species | 1 | 0 |
| united states | florida | whitefly vem 2 begomovirus | species | 1 | 0 |
| united states | texas | kenal mosaic virus | species | 1 | 0 |
| united states | texas | pepper geminivirus | species | 1 | 0 |
| venezuela | | bean chlorotic mosaic virus | species | 4 | 0 |
| venezuela | | potato yellow mosaic trinidad virus | species | 2 | 0 |
| venezuela | | tomato begomovirus t217l | species | 1 | 0 |
| venezuela | | tomato venezuela begomovirus | species | 1 | 0 |
| venezuela | aragua | tomato geminivirus | species | 8 | 0 |
| venezuela | lara | tomato geminivirus | species | 28 | 0 |
| vietnam | | ageratum yellow vein china virus | species | 1 | 0 |
| vietnam | | ageratum yellow vein china virus - [z1] | no rank | 1 | 0 |
| vietnam | | clerodendron golden mosaic virus | species | 4 | 0 |
| vietnam | cao bang province | tobacco leaf curl virus | species | 29 | 0 |
| vietnam | ha tay province | tobacco leaf curl virus | species | 1 | 0 |
| zambia | | cassava geminivirus | species | 2 | 0 |
| zimbabwe | | cassava geminivirus | species | 3 | 0 |
| zimbabwe | | tobacco leaf curl virus | species | 10 | 0 |