| antarctica | | stenotrophomonas sp. pamc25021 | species | 1 | 0 |
| canada | ontario | stenotrophomonas sp. 14-69-23 | species | 31 | 0 |
| egypt | | stenotrophomonas sp. dd5 | species | 1 | 0 |
| hungary | | stenotrophomonas sp. seprk11 | species | 1 | 0 |
| hungary | | stenotrophomonas sp. seprk9 | species | 1 | 0 |
| japan | | stenotrophomonas sp. ccm-076 | species | 1 | 0 |
| japan | | stenotrophomonas sp. cin005 | species | 1 | 0 |
| japan | tokushima prefecture | stenotrophomonas sp. ku1408-4-5 | species | 1 | 0 |
| netherlands | | stenotrophomonas sp. seb11 | species | 1 | 0 |
| netherlands | | stenotrophomonas sp. sob24 | species | 1 | 0 |
| netherlands | | stenotrophomonas sp. sob25 | species | 1 | 0 |
| netherlands | | stenotrophomonas sp. wb16 | species | 1 | 0 |
| nigeria | abia | stenotrophomonas sp. 2b | species | 47 | 0 |
| pakistan | islamabad capital territory | stenotrophomonas sp. nccp-1829 | species | 1 | 0 |
| south africa | | stenotrophomonas sp. lbqskf3 | species | 1 | 0 |
| south africa | | stenotrophomonas sp. lbqskn3 | species | 1 | 0 |
| spain | | stenotrophomonas sp. m9-27-1 | species | 1 | 0 |
| thailand | | stenotrophomonas sp. ma331 | species | 1 | 0 |
| thailand | | stenotrophomonas sp. na376 | species | 1 | 0 |
| united states | alaska | stenotrophomonas sp. betaine-02u-21 | species | 300 | 0 |
| united states | alaska | stenotrophomonas sp. betaine-02u-23 | species | 326 | 0 |
| united states | alaska | stenotrophomonas sp. bg11-02 | species | 144 | 0 |
| united states | michigan | stenotrophomonas sp. hmwf003 | species | 950 | 0 |
| united states | new york | stenotrophomonas sp. uba1577 | species | 1 | 0 |
| united states | new york | stenotrophomonas sp. uba1867 | species | 1 | 0 |
| united states | new york | stenotrophomonas sp. uba2118 | species | 1 | 0 |
| united states | new york | stenotrophomonas sp. uba2123 | species | 1 | 0 |
| united states | new york | stenotrophomonas sp. uba2124 | species | 1 | 0 |
| united states | new york | stenotrophomonas sp. uba2302 | species | 1 | 0 |
| united states | new york | stenotrophomonas sp. uba2629 | species | 1 | 0 |
| united states | new york | stenotrophomonas sp. uba3236 | species | 1 | 0 |
| united states | new york | stenotrophomonas sp. uba3238 | species | 1 | 0 |
| united states | new york | stenotrophomonas sp. uba3473 | species | 1 | 0 |
| united states | new york | stenotrophomonas sp. uba5023 | species | 1 | 0 |
| united states | new york | stenotrophomonas sp. uba6759 | species | 1 | 0 |
| united states | new york | stenotrophomonas sp. uba7346 | species | 1 | 0 |
| united states | new york | stenotrophomonas sp. uba7606 | species | 1 | 0 |
| united states | new york | stenotrophomonas sp. uba7651 | species | 1 | 0 |
| united states | new york | stenotrophomonas sp. uba878 | species | 1 | 0 |
| united states | south carolina | stenotrophomonas sp. ma5 | species | 524 | 0 |