| angola | luanda province | anopheles flavivirus | species | 3 | 0 |
| argentina | | flaviviridae sp. | species | 8 | 0 |
| australia | | bamaga virus | species | 2 | 0 |
| australia | | eastern red scorpionfish flavivirus | species | 1 | 0 |
| australia | | gudgenby flavi-like virus | species | 1 | 0 |
| australia | | southern pygmy squid flavivirus | species | 1 | 0 |
| australia | new south wales | dairy swamp virus | species | 2 | 0 |
| australia | new south wales | haslams creek virus | species | 3 | 0 |
| australia | new south wales | mac peak virus | species | 5 | 0 |
| australia | northern territory | lammi virus | species | 0 | 1 |
| australia | northern territory | nakiwogo virus | species | 0 | 1 |
| australia | queensland | dairy swamp virus | species | 1 | 0 |
| australia | victoria | karumba virus | species | 1 | 0 |
| australia | western australia | karumba virus | species | 28 | 0 |
| austria | vienna | anopheles flavivirus | species | 30 | 0 |
| bosnia and herzegovina | | flaviviridae sp. 2018_bih | species | 1 | 0 |
| brazil | | chacorore flavivirus | species | 1 | 0 |
| brazil | | guapiacu virus | species | 7 | 0 |
| brazil | | jingmen tick virus | no rank | 24 | 0 |
| brazil | | mogiana tick virus | species | 26 | 0 |
| brazil | | sabethes flavivirus | species | 6 | 0 |
| brazil | mato grosso do sul | nhumirim virus | species | 2 | 0 |
| brazil | minas gerais | mogiana tick virus | species | 3 | 0 |
| cambodia | | jingmen tick virus | no rank | 4 | 0 |
| canada | alberta | nakiwogo virus | species | 0 | 1 |
| china | | alongshan virus | species | 1 | 0 |
| china | | dongyang pangolin virus | species | 2 | 0 |
| china | | flaviviridae sp. | species | 7 | 0 |
| china | | hcv/gbv-b chimeric virus | species | 1 | 0 |
| china | | jingmen tick virus | no rank | 373 | 0 |
| china | | mogiana tick virus | species | 4 | 0 |
| china | | nanhai dogfish shark pesti-like virus | species | 1 | 0 |
| china | | rhipicephalus associated flavi-like virus | species | 4 | 0 |
| china | | wenling pesti-like virus 2 | species | 1 | 0 |
| china | | wenzhou pesti-like virus 1 | species | 1 | 0 |
| china | | wenzhou shark flavivirus | species | 2 | 0 |
| china | | xiamen fanray pesti-like virus | species | 1 | 0 |
| china | | xishuangbanna aedes flavivirus | species | 2 | 0 |
| china | anhui | jingmen tick virus | no rank | 1 | 0 |
| china | fujian | jingmen tick virus | no rank | 6 | 0 |
| china | guizhou | jingmen tick virus | no rank | 13 | 0 |
| china | heilongjiang | alongshan virus | species | 13 | 0 |
| china | heilongjiang | jingmen tick virus | no rank | 2 | 0 |
| china | henan | jingmen tick virus | no rank | 3 | 0 |
| china | inner mongolia | alongshan virus | species | 14911 | 0 |
| china | inner mongolia | jingmen tick virus | no rank | 1 | 0 |
| china | jiangsu | macrobrachium flavivirus 1 | species | 1 | 0 |
| china | jilin | alongshan virus | species | 2 | 0 |
| china | shandong | jingmen tick virus | no rank | 3 | 0 |
| china | yunnan | jingmen tick virus | no rank | 3 | 0 |
| china | yunnan | nakiwogo virus | species | 0 | 1 |
| china | yunnan | xishuangbanna aedes flavivirus | species | 0 | 1 |
| china | zhejiang | macrobrachium flavivirus 1 | species | 1 | 0 |
| colombia | | atrato flavi-like virus 1 | species | 2 | 0 |
| colombia | | jingmen tick virus | no rank | 6 | 0 |
| finland | | alongshan virus | species | 8 | 0 |
| finland | | ilomantsi virus | species | 2 | 0 |
| finland | | lammi virus | species | 3 | 0 |
| finland | | lampyris noctiluca flavivirus 1 | species | 1 | 0 |
| france | | gammarus pulex flavivirus | species | 1 | 0 |
| france | | macrosiphum euphorbiae virus 1 | species | 2 | 0 |
| france | alsace region | jingmen tick virus | no rank | 4 | 0 |
| gabon | | bat gb virus jfd/gabon/2005 | species | 10 | 0 |
| gabon | | bat gb-like virus jfd-2011 | species | 6 | 0 |
| germany | | crangon crangon flavivirus | species | 1 | 0 |
| germany | | jingmen tick virus | no rank | 4 | 0 |
| ghana | | bat gb-like virus jfd-2011 | species | 37 | 0 |
| hungary | | anopheles hyrcanus flavivirus | species | 1 | 0 |
| israel | | barkedji virus | species | 1 | 0 |
| italy | | flavivirus 1493vn | species | 1 | 0 |
| italy | | flavivirus oc599-al/ita/2012 | species | 1 | 0 |
| italy | | flavivirus oc748-al/ita/2012 | species | 1 | 0 |
| italy | | plasmopara viticola associated jingman-like virus 1 | species | 2 | 0 |
| ivory coast | | anopheles flavivirus | species | 2 | 0 |
| ivory coast | | nienokoue virus | species | 4 | 0 |
| japan | | culex tritaeniorhynchus flavi-like virus | species | 1 | 0 |
| japan | | firefly squid flavivirus | species | 2 | 0 |
| japan | ehime prefecture | jingmen tick virus | no rank | 28 | 0 |
| japan | ishikawa prefecture | jingmen tick virus | no rank | 4 | 0 |
| japan | okayama prefecture | sitobion miscanthi flavi-like virus 1 | species | 1 | 0 |
| japan | wakayama prefecture | yamaguchi virus | species | 17 | 0 |
| japan | yamaguchi prefecture | yamaguchi virus | species | 15 | 0 |
| kenya | | anopheles flavivirus | species | 1 | 0 |
| kenya | | jingmen tick virus | no rank | 1 | 0 |
| kenya | | takaungu virus | species | 1 | 0 |
| kosovo | | jingmen tick virus | no rank | 12 | 0 |
| laos | | jingmen tick virus | no rank | 4 | 0 |
| liberia | | anopheles flavivirus variant 1 | no rank | 2 | 0 |
| liberia | | anopheles flavivirus variant 2 | no rank | 1 | 0 |
| malaysia | | batu kawa virus | species | 1 | 0 |
| mexico | yucatan | nakiwogo virus | species | 0 | 1 |
| mozambique | | cuacua virus | species | 1 | 0 |
| norway | | lumpfish flavivirus | species | 2 | 0 |
| oman | | barkedji virus | species | 2 | 0 |
| romania | | jingmen tick virus | no rank | 4 | 0 |
| russia | | manych virus | species | 2 | 0 |
| russia | chelyabinsk oblast | alongshan virus | species | 131 | 0 |
| russia | kaliningrad oblast | alongshan virus | species | 23 | 0 |
| russia | karelia republic | alongshan virus | species | 18 | 0 |
| russia | tatarstan republic | alongshan virus | species | 1 | 0 |
| senegal | | anopheles flavivirus-like 1 | species | 1 | 0 |
| senegal | | anopheles flavivirus-like 2 | species | 1 | 0 |
| senegal | | barkedji virus | species | 1 | 0 |
| serbia | | jingmen tick virus | no rank | 2 | 0 |
| singapore | | flaviviridae sp. | species | 2 | 0 |
| south africa | | apis flavivirus | species | 2 | 0 |
| spain | | flavivirus av-2011/spain | species | 5 | 0 |
| spain | | plasmopara viticola associated flavi-like virus 1 | species | 1 | 0 |
| thailand | | shrew pegivirus | species | 3 | 0 |
| trinidad and tobago | | aripo virus | species | 9 | 0 |
| trinidad and tobago | | jingmen tick virus | no rank | 8 | 0 |
| turkey | | anopheles flavivirus | species | 1 | 0 |
| turkey | | jingmen tick virus | no rank | 32 | 0 |
| turkey | | lamb pestivirus | species | 1 | 0 |
| uganda | | jingmen tick virus | no rank | 4 | 0 |
| uganda | | nakiwogo virus | species | 2 | 0 |
| united kingdom | | gammarus chevreuxi flavivirus | species | 1 | 0 |
| united kingdom | | lumpfish flavivirus | species | 1 | 0 |
| united states | | culex flavi-like virus | species | 2 | 0 |
| united states | | salmon flavivirus | species | 1 | 0 |
| united states | | soybean cyst nematode virus 5 | species | 2 | 0 |
| united states | california | lammi virus | species | 0 | 1 |
| united states | california | nakiwogo virus | species | 0 | 2 |
| united states | colorado | lammi virus | species | 0 | 1 |
| united states | colorado | nakiwogo virus | species | 0 | 2 |
| united states | connecticut | culiseta flavivirus | species | 14 | 1 |
| united states | maine | culiseta flavivirus | species | 1 | 1 |
| united states | new hampshire | culiseta flavivirus | species | 5 | 1 |
| united states | new york | culiseta flavivirus | species | 4 | 1 |
| zambia | southern province | barkedji virus | species | 1 | 0 |