| antarctica | | cystobasidium ongulense | species | 19 | 0 |
| antarctica | | cystobasidium portillonense | species | 2 | 0 |
| antarctica | | cystobasidium sp. | species | 6 | 0 |
| antarctica | | cystobasidium sp. clqca-ant-002 | species | 2 | 0 |
| antarctica | | cystobasidium sp. clqca-ant-047 | species | 2 | 0 |
| antarctica | | cystobasidium tubakii | species | 6 | 0 |
| antarctica | | uncultured cystobasidium | species | 1 | 0 |
| brazil | | cystobasidium sp. | species | 2 | 0 |
| brazil | minas gerais | cystobasidium oligophagum | species | 1 | 0 |
| canada | | cystobasidium ongulense | species | 1 | 0 |
| china | | cystobasidium oligophagum | species | 1 | 0 |
| china | | cystobasidium sp. | species | 22 | 0 |
| china | hubei | cystobasidium sp. | species | 6 | 0 |
| france | | cystobasidium sp. | species | 2 | 0 |
| france | auvergne region | cystobasidium sp. | species | 1 | 0 |
| germany | | cystobasidium fimetarium | species | 1 | 0 |
| germany | berlin | cystobasidium sp. 1224 fbb | species | 1 | 0 |
| germany | berlin | cystobasidium sp. 1820 fbb | species | 1 | 0 |
| germany | brandenburg | uncultured cystobasidium | species | 2 | 0 |
| germany | hesse | cystobasidium fimetarium | species | 1 | 0 |
| germany | mecklenburg-vorpommern | cystobasidium sp. 1128 feb | species | 1 | 0 |
| germany | mecklenburg-vorpommern | cystobasidium sp. 326 feg | species | 3 | 0 |
| germany | mecklenburg-vorpommern | cystobasidium sp. 586 fbg | species | 1 | 0 |
| germany | mecklenburg-vorpommern | cystobasidium sp. 589 fbg | species | 1 | 0 |
| germany | mecklenburg-vorpommern | cystobasidium sp. 920 fbg | species | 1 | 0 |
| germany | mecklenburg-vorpommern | cystobasidium sp. otu_099 | species | 1 | 0 |
| hungary | | cystobasidium sp. | species | 2 | 0 |
| iceland | | cystobasidium ongulense | species | 3 | 0 |
| india | | cystobasidium oligophagum | species | 1 | 0 |
| iran | | cystobasidium sp. | species | 1 | 0 |
| israel | | cystobasidium sp. p2 | species | 2 | 0 |
| japan | | cystobasidium sp. | species | 2 | 0 |
| japan | kanagawa prefecture | cystobasidium oligophagum | species | 1 | 0 |
| mexico | | uncultured cystobasidium | species | 1 | 0 |
| namibia | | cystobasidium sp. | species | 1 | 0 |
| peru | | cystobasidium sp. | species | 2 | 0 |
| poland | | cystobasidium ongulense | species | 1 | 0 |
| qatar | | cystobasidium sp. | species | 9 | 0 |
| russia | | cystobasidium psychroaquaticum | species | 4 | 0 |
| russia | | cystobasidium ritchiei | species | 2 | 0 |
| spain | valencia | cystobasidium sp. | species | 1 | 0 |
| sweden | | uncultured cystobasidium | species | 1 | 0 |
| sweden | vastra gotaland | cystobasidium oligophagum | species | 1 | 0 |
| thailand | | cystobasidium sp. hb32 | species | 1 | 0 |
| thailand | chonburi province | cystobasidium sp. dmku312-3 | species | 2 | 0 |
| thailand | chonburi province | cystobasidium sp. dmkuc317-1 | species | 1 | 0 |
| thailand | nakhon nayok province | cystobasidium sp. dmku-re79 | species | 1 | 0 |
| thailand | nakhon sawan province | cystobasidium sp. dmku-sp427 | species | 2 | 0 |
| thailand | suphan buri province | cystobasidium sp. dmku-re72 | species | 1 | 0 |
| united states | | cystobasidium ongulense | species | 3 | 0 |
| united states | | cystobasidium psychroaquaticum | species | 3 | 0 |
| united states | | uncultured cystobasidium | species | 1 | 0 |
| united states | california | cystobasidium sp. | species | 3 | 0 |
| vanuatu | | cystobasidium sp. | species | 2 | 0 |