| aland islands | | borreliella afzelii | species | 86 | 1 |
| austria | | borrelia afzelii k78 | no rank | 28 | 0 |
| austria | | borreliella afzelii | species | 3 | 0 |
| austria | carinthia | borreliella afzelii | species | 0 | 1 |
| austria | lower austria | borreliella afzelii | species | 0 | 3 |
| austria | salzburg | borreliella afzelii | species | 0 | 1 |
| austria | styria | borreliella afzelii | species | 0 | 1 |
| austria | vienna | borreliella afzelii | species | 0 | 2 |
| belarus | | borreliella afzelii | species | 7 | 0 |
| belarus | brest region | borreliella afzelii | species | 0 | 1 |
| belarus | gomel region | borreliella afzelii | species | 0 | 1 |
| belarus | mogilev region | borreliella afzelii | species | 0 | 1 |
| brazil | rio grande do sul | borreliella afzelii | species | 0 | 1 |
| china | | borreliella afzelii | species | 3 | 0 |
| china | gansu | borreliella afzelii | species | 1 | 1 |
| china | guangxi | borreliella afzelii | species | 1 | 0 |
| china | guizhou | borreliella afzelii | species | 0 | 1 |
| china | heilongjiang | borreliella afzelii | species | 15 | 2 |
| china | hunan | borreliella afzelii | species | 0 | 1 |
| china | xinjiang | borreliella afzelii | species | 0 | 2 |
| china | yunnan | borreliella afzelii | species | 10 | 0 |
| china | zhejiang | borreliella afzelii | species | 0 | 1 |
| croatia | zadar county | borreliella afzelii | species | 0 | 1 |
| czech republic | | borreliella afzelii | species | 21 | 0 |
| czech republic | prague city | borreliella afzelii | species | 4 | 1 |
| czech republic | south bohemian region | borreliella afzelii | species | 0 | 1 |
| denmark | | borreliella afzelii | species | 3 | 0 |
| denmark | region zealand | borreliella afzelii | species | 0 | 1 |
| egypt | | borreliella afzelii | species | 2 | 0 |
| egypt | giza governorate | borreliella afzelii | species | 0 | 1 |
| estonia | | borreliella afzelii | species | 4 | 0 |
| finland | | borreliella afzelii | species | 1 | 0 |
| finland | northern ostrobothnia region | borreliella afzelii | species | 1 | 0 |
| finland | uusimaa region | borreliella afzelii | species | 1 | 0 |
| france | | borreliella afzelii | species | 8 | 0 |
| france | alsace region | borrelia afzelii ipt109 | no rank | 538 | 0 |
| france | alsace region | borrelia afzelii ipt110 | no rank | 732 | 0 |
| france | alsace region | borrelia afzelii ipt138 | no rank | 194 | 0 |
| france | alsace region | borrelia afzelii ipt142 | no rank | 555 | 0 |
| france | alsace region | borreliella afzelii | species | 0 | 2 |
| france | basse-normandie region | borreliella afzelii | species | 1 | 0 |
| france | ile-de-france region | borreliella afzelii | species | 0 | 1 |
| france | rhone-alpes region | borreliella afzelii | species | 0 | 1 |
| germany | | borrelia afzelii pko | no rank | 2 | 0 |
| germany | | borreliella afzelii | species | 135 | 0 |
| germany | bavaria | borreliella afzelii | species | 0 | 1 |
| germany | berlin | borreliella afzelii | species | 0 | 2 |
| germany | brandenburg | borreliella afzelii | species | 0 | 1 |
| germany | hamburg | borreliella afzelii | species | 0 | 1 |
| germany | thuringen | borreliella afzelii | species | 0 | 1 |
| hungary | | borreliella afzelii | species | 22 | 0 |
| hungary | somogy county | borreliella afzelii | species | 1 | 0 |
| iran | mazandaran province | borreliella afzelii | species | 1 | 0 |
| ireland | | borreliella afzelii | species | 4 | 0 |
| italy | | borreliella afzelii | species | 23 | 0 |
| italy | abruzzo region | borreliella afzelii | species | 0 | 1 |
| italy | friuli-venezia giulia autonomous region | borreliella afzelii | species | 0 | 1 |
| italy | lazio region | borreliella afzelii | species | 0 | 1 |
| italy | lombardy region | borreliella afzelii | species | 4 | 0 |
| italy | piemonte region | borreliella afzelii | species | 4 | 0 |
| italy | sardinia autonomous region | borreliella afzelii | species | 1 | 0 |
| italy | tuscany region | borreliella afzelii | species | 0 | 2 |
| italy | umbria region | borreliella afzelii | species | 2 | 0 |
| italy | veneto region | borreliella afzelii | species | 2 | 3 |
| japan | | borreliella afzelii | species | 1 | 0 |
| japan | hokkaido prefecture | borreliella afzelii | species | 0 | 7 |
| japan | kanagawa prefecture | borreliella afzelii | species | 0 | 1 |
| japan | nagano prefecture | borreliella afzelii | species | 1 | 1 |
| japan | shizuoka prefecture | borreliella afzelii | species | 0 | 1 |
| lithuania | | borreliella afzelii | species | 7 | 0 |
| luxembourg | | borreliella afzelii | species | 106 | 0 |
| moldova | | borreliella afzelii | species | 2 | 0 |
| mongolia | | borreliella afzelii | species | 3 | 0 |
| mongolia | bulgan province | borreliella afzelii | species | 1 | 0 |
| mongolia | selenge province | borreliella afzelii | species | 14 | 0 |
| netherlands | friesland province | borreliella afzelii | species | 0 | 2 |
| netherlands | north holland province | borreliella afzelii | species | 0 | 1 |
| norway | | borreliella afzelii | species | 2 | 0 |
| norway | aust-agder county | borreliella afzelii | species | 0 | 1 |
| norway | more og romsdal county | borreliella afzelii | species | 0 | 2 |
| norway | vest-agder county | borreliella afzelii | species | 0 | 1 |
| pakistan | | borreliella afzelii | species | 3 | 0 |
| poland | | borreliella afzelii | species | 123 | 0 |
| poland | greater poland province | borreliella afzelii | species | 1 | 0 |
| poland | lower silesia province | borreliella afzelii | species | 1 | 0 |
| poland | lublin province | borreliella afzelii | species | 0 | 2 |
| poland | mazovia province | borreliella afzelii | species | 9 | 2 |
| poland | silesia province | borreliella afzelii | species | 0 | 1 |
| portugal | | borreliella afzelii | species | 3 | 0 |
| romania | | borreliella afzelii | species | 6 | 0 |
| russia | | borreliella afzelii | species | 115 | 0 |
| russia | altai krai | borreliella afzelii | species | 9 | 0 |
| russia | altai republic | borreliella afzelii | species | 10 | 0 |
| russia | amur oblast | borreliella afzelii | species | 4 | 0 |
| russia | arkhangelsk oblast | borreliella afzelii | species | 27 | 0 |
| russia | irkutsk oblast | borreliella afzelii | species | 14 | 0 |
| russia | kaliningrad oblast | borreliella afzelii | species | 0 | 1 |
| russia | kemerovo oblast | borreliella afzelii | species | 1 | 0 |
| russia | khabarovsk krai | borreliella afzelii | species | 7 | 0 |
| russia | krasnoyarsk krai | borreliella afzelii | species | 2 | 0 |
| russia | leningrad oblast | borreliella afzelii | species | 1 | 0 |
| russia | moscow city | borreliella afzelii | species | 0 | 3 |
| russia | moscow oblast | borreliella afzelii | species | 0 | 3 |
| russia | novosibirsk oblast | borreliella afzelii | species | 39 | 1 |
| russia | omsk oblast | borreliella afzelii | species | 9 | 0 |
| russia | perm krai | borreliella afzelii | species | 36 | 0 |
| russia | primorsky krai | borreliella afzelii | species | 9 | 0 |
| russia | saint petersburg | borreliella afzelii | species | 9 | 2 |
| russia | sverdlovsk oblast | borreliella afzelii | species | 11 | 1 |
| russia | tomsk oblast | borrelia afzelii tom3107 | no rank | 3 | 0 |
| russia | tomsk oblast | borreliella afzelii | species | 45 | 0 |
| russia | tver oblast | borreliella afzelii | species | 0 | 1 |
| russia | ulyanovsk oblast | borreliella afzelii | species | 1 | 0 |
| serbia | | borreliella afzelii | species | 20 | 0 |
| serbia | central serbia | borreliella afzelii | species | 0 | 1 |
| slovakia | | borreliella afzelii | species | 7 | 0 |
| slovakia | bratislava region | borreliella afzelii | species | 8 | 0 |
| slovakia | kosice region | borreliella afzelii | species | 2 | 1 |
| slovenia | | borreliella afzelii | species | 6 | 0 |
| slovenia | city municipality of ljubljana | borreliella afzelii | species | 0 | 1 |
| south korea | | borreliella afzelii | species | 28 | 0 |
| spain | | borreliella afzelii | species | 11 | 0 |
| spain | asturias | borreliella afzelii | species | 18 | 0 |
| spain | basque country | borreliella afzelii | species | 0 | 1 |
| sweden | | borreliella afzelii | species | 196 | 0 |
| sweden | blekinge | borreliella afzelii | species | 0 | 1 |
| switzerland | | borreliella afzelii | species | 9 | 0 |
| switzerland | neuchatel region | borreliella afzelii | species | 0 | 1 |
| taiwan | | borreliella afzelii | species | 4 | 2 |
| turkey | | borreliella afzelii | species | 9 | 0 |
| ukraine | | borreliella afzelii | species | 1 | 0 |
| ukraine | kiev oblast | borreliella afzelii | species | 0 | 1 |
| united kingdom | england | borreliella afzelii | species | 2 | 1 |
| united kingdom | scotland | borreliella afzelii | species | 32 | 2 |
| united states | | borreliella afzelii | species | 1 | 0 |
| united states | south carolina | borreliella afzelii | species | 7 | 0 |