| algeria | | bacillus pumilus | species | 4 | 0 |
| algeria | biskra province | bacillus pumilus | species | 1 | 0 |
| algeria | blida province | bacillus pumilus | species | 1 | 0 |
| algeria | m'sila province | bacillus pumilus | species | 3 | 0 |
| antarctica | | bacillus pumilus | species | 2 | 0 |
| argentina | | bacillus pumilus | species | 28 | 0 |
| argentina | buenos aires city | bacillus pumilus | species | 0 | 1 |
| argentina | buenos aires province | bacillus pumilus | species | 0 | 1 |
| argentina | catamarca province | bacillus pumilus | species | 2 | 0 |
| argentina | jujuy province | bacillus pumilus | species | 1 | 0 |
| argentina | salta province | bacillus pumilus | species | 2 | 0 |
| armenia | | bacillus pumilus | species | 3 | 0 |
| australia | | bacillus pumilus | species | 85 | 0 |
| australia | new south wales | bacillus pumilus | species | 35 | 0 |
| austria | | bacillus pumilus | species | 25 | 0 |
| austria | styria | bacillus pumilus | species | 2 | 0 |
| austria | vienna | bacillus pumilus | species | 1 | 0 |
| bahamas | | bacillus pumilus | species | 1 | 0 |
| bangladesh | | bacillus pumilus | species | 4 | 0 |
| belarus | | bacillus pumilus | species | 13 | 0 |
| belgium | | bacillus pumilus | species | 18 | 0 |
| brazil | | bacillus pumilus | species | 69 | 0 |
| brazil | | bacillus pumilus ccma-560 | no rank | 146 | 0 |
| brazil | amazonas | bacillus pumilus | species | 1 | 0 |
| brazil | mato grosso | bacillus pumilus | species | 1 | 0 |
| brazil | parana | bacillus pumilus | species | 2 | 0 |
| brazil | pernambuco | bacillus pumilus | species | 6 | 0 |
| brazil | rio de janeiro | bacillus pumilus | species | 21 | 0 |
| brazil | rio grande do sul | bacillus pumilus | species | 35 | 0 |
| brazil | rondonia | bacillus pumilus | species | 3 | 0 |
| brazil | sao paulo | bacillus pumilus | species | 35 | 0 |
| brazil | sergipe | bacillus pumilus | species | 4 | 0 |
| bulgaria | | bacillus pumilus | species | 6 | 0 |
| burkina faso | nord region | bacillus pumilus | species | 1 | 0 |
| cameroon | | bacillus pumilus | species | 4 | 0 |
| canada | | bacillus pumilus | species | 3 | 0 |
| canada | ontario | bacillus pumilus | species | 1 | 0 |
| canada | quebec | bacillus pumilus | species | 1 | 0 |
| chile | | bacillus pumilus | species | 451 | 0 |
| chile | antofagasta region | bacillus pumilus | species | 82 | 0 |
| chile | araucania region | bacillus pumilus | species | 1 | 0 |
| china | | bacillus pumilus | species | 399 | 0 |
| china | anhui | bacillus pumilus | species | 7 | 0 |
| china | beijing | bacillus pumilus | species | 4 | 0 |
| china | chongqing | bacillus pumilus | species | 1 | 0 |
| china | fujian | bacillus pumilus | species | 6 | 0 |
| china | guangdong | bacillus pumilus | species | 18 | 0 |
| china | guangxi | bacillus pumilus | species | 2 | 0 |
| china | hainan | bacillus pumilus | species | 16 | 0 |
| china | hebei | bacillus pumilus | species | 1 | 0 |
| china | heilongjiang | bacillus pumilus | species | 1 | 0 |
| china | henan | bacillus pumilus | species | 14 | 0 |
| china | hunan | bacillus pumilus ba06 | no rank | 32 | 0 |
| china | inner mongolia | bacillus pumilus | species | 10 | 0 |
| china | jiangsu | bacillus pumilus | species | 39 | 0 |
| china | jiangxi | bacillus pumilus | species | 5 | 0 |
| china | liaoning | bacillus pumilus | species | 1 | 0 |
| china | ningxia | bacillus pumilus | species | 2 | 0 |
| china | qinghai | bacillus pumilus | species | 8 | 0 |
| china | shaanxi | bacillus pumilus | species | 6 | 0 |
| china | shandong | bacillus pumilus | species | 42 | 0 |
| china | shanghai shi | bacillus pumilus | species | 1 | 0 |
| china | shanxi | bacillus pumilus | species | 2 | 0 |
| china | sichuan | bacillus pumilus | species | 28 | 0 |
| china | tianjin shi | bacillus pumilus | species | 4 | 0 |
| china | tibet | bacillus pumilus | species | 140 | 0 |
| china | xinjiang | bacillus pumilus | species | 9 | 0 |
| china | yunnan | bacillus pumilus | species | 6 | 0 |
| china | zhejiang | bacillus pumilus | species | 8 | 0 |
| colombia | | bacillus pumilus | species | 12 | 0 |
| colombia | archipelago of san andres providencia and santa catalina colombia department | bacillus pumilus | species | 1 | 0 |
| costa rica | limon province | bacillus pumilus | species | 2 | 0 |
| croatia | istria county | bacillus pumilus | species | 4 | 0 |
| cuba | | bacillus pumilus | species | 4 | 0 |
| curacao | | bacillus pumilus | species | 1 | 0 |
| czech republic | | bacillus pumilus | species | 3 | 0 |
| ecuador | | bacillus pumilus | species | 2 | 0 |
| egypt | | bacillus pumilus | species | 42 | 0 |
| egypt | alexandria governorate | bacillus pumilus | species | 5 | 0 |
| egypt | asyut governorate | bacillus pumilus | species | 1 | 0 |
| egypt | gharbia governorate | bacillus pumilus | species | 1 | 0 |
| egypt | red sea governorate | bacillus pumilus | species | 1 | 0 |
| estonia | | bacillus pumilus | species | 1 | 0 |
| finland | | bacillus pumilus | species | 7 | 0 |
| france | | bacillus pumilus | species | 1 | 0 |
| france | franche-comte region | bacillus pumilus | species | 1 | 0 |
| germany | | bacillus pumilus | species | 87 | 0 |
| germany | baden-wuerttemberg | bacillus pumilus | species | 5 | 0 |
| germany | bavaria | bacillus pumilus | species | 28 | 0 |
| germany | berlin | bacillus pumilus | species | 2 | 0 |
| germany | lower saxony | bacillus pumilus | species | 1 | 0 |
| germany | mecklenburg-vorpommern | bacillus pumilus | species | 6 | 0 |
| germany | north rhine-westphalia | bacillus pumilus | species | 3 | 0 |
| germany | saxony | bacillus pumilus | species | 1 | 0 |
| germany | thuringen | bacillus pumilus | species | 2 | 0 |
| greece | | bacillus pumilus | species | 7 | 0 |
| hungary | | bacillus pumilus | species | 6 | 0 |
| hungary | bacs-kiskun county | bacillus pumilus | species | 1 | 0 |
| hungary | fejer county | bacillus pumilus | species | 2 | 0 |
| hungary | veszprem county | bacillus pumilus | species | 3 | 0 |
| india | | bacillus pumilus | species | 552 | 0 |
| india | andaman and nicobar islands | bacillus pumilus | species | 7 | 0 |
| india | andhra pradesh | bacillus pumilus | species | 2 | 0 |
| india | assam | bacillus pumilus | species | 7 | 0 |
| india | chhattisgarh | bacillus pumilus | species | 1 | 0 |
| india | goa | bacillus pumilus | species | 20 | 0 |
| india | gujarat | bacillus pumilus | species | 21 | 0 |
| india | haryana | bacillus pumilus | species | 1 | 0 |
| india | himachal pradesh | bacillus pumilus | species | 7 | 0 |
| india | jammu and kashmir | bacillus pumilus | species | 43 | 1 |
| india | karnataka | bacillus pumilus | species | 3 | 0 |
| india | kerala | bacillus pumilus | species | 73 | 0 |
| india | madhya pradesh | bacillus pumilus | species | 1 | 0 |
| india | maharashtra | bacillus pumilus | species | 14 | 0 |
| india | manipur | bacillus pumilus | species | 0 | 1 |
| india | meghalaya | bacillus pumilus | species | 0 | 1 |
| india | mizoram | bacillus pumilus | species | 0 | 1 |
| india | nagaland | bacillus pumilus | species | 6 | 0 |
| india | national capital territory of delhi | bacillus pumilus | species | 3 | 0 |
| india | odisha | bacillus pumilus | species | 7 | 0 |
| india | punjab | bacillus pumilus | species | 2 | 0 |
| india | rajasthan | bacillus pumilus | species | 8 | 0 |
| india | tamil nadu | bacillus pumilus | species | 58 | 1 |
| india | tripura | bacillus pumilus | species | 1 | 0 |
| india | uttar pradesh | bacillus pumilus | species | 14 | 0 |
| india | uttarakhand | bacillus pumilus | species | 2 | 0 |
| india | west bengal | bacillus pumilus | species | 16 | 1 |
| indonesia | | bacillus pumilus | species | 5 | 0 |
| indonesia | central java province | bacillus pumilus | species | 2 | 0 |
| indonesia | east java province | bacillus pumilus | species | 0 | 1 |
| iran | | bacillus pumilus | species | 62 | 0 |
| iran | gilan province | bacillus pumilus | species | 1 | 0 |
| iran | hormozgan province | bacillus pumilus | species | 4 | 0 |
| iran | ilam province | bacillus pumilus | species | 3 | 0 |
| iran | isfahan province | bacillus pumilus | species | 4 | 0 |
| iran | kerman province | bacillus pumilus | species | 1 | 0 |
| iran | khuzestan province | bacillus pumilus | species | 1 | 0 |
| iran | west azerbaijan province | bacillus pumilus | species | 1 | 0 |
| iran | zanjan province | bacillus pumilus | species | 1 | 0 |
| iraq | | bacillus pumilus | species | 10 | 0 |
| iraq | kirkuk governorate | bacillus pumilus | species | 1 | 0 |
| ireland | | bacillus pumilus | species | 21 | 0 |
| ireland | munster province | bacillus pumilus | species | 1 | 0 |
| israel | | bacillus pumilus | species | 12 | 0 |
| italy | | bacillus pumilus | species | 61 | 0 |
| italy | apulia region | bacillus pumilus | species | 1 | 0 |
| italy | campania region | bacillus pumilus | species | 5 | 1 |
| italy | lombardy region | bacillus pumilus | species | 1 | 0 |
| ivory coast | lacs region | bacillus pumilus | species | 1 | 0 |
| ivory coast | lagunes region | bacillus pumilus | species | 4 | 0 |
| japan | | bacillus pumilus | species | 27 | 0 |
| japan | aomori prefecture | bacillus pumilus | species | 1 | 0 |
| japan | fukushima prefecture | bacillus pumilus | species | 0 | 2 |
| japan | hiroshima prefecture | bacillus pumilus | species | 2 | 0 |
| japan | hokkaido prefecture | bacillus pumilus | species | 0 | 1 |
| japan | hyogo prefecture | bacillus pumilus | species | 7 | 0 |
| japan | miyagi ken prefecture | bacillus pumilus | species | 1 | 0 |
| japan | nagasaki prefecture | bacillus pumilus | species | 2 | 0 |
| japan | shizuoka prefecture | bacillus pumilus | species | 1 | 0 |
| japan | tokyo prefecture | bacillus pumilus | species | 1 | 0 |
| jordan | | bacillus pumilus | species | 2 | 0 |
| kenya | | bacillus pumilus | species | 12 | 0 |
| kuwait | | bacillus pumilus | species | 2 | 1 |
| kuwait | jahra governorate | bacillus pumilus | species | 1 | 0 |
| madagascar | | bacillus pumilus | species | 13 | 0 |
| malaysia | | bacillus pumilus | species | 135 | 0 |
| malaysia | johor | bacillus pumilus | species | 2 | 0 |
| malaysia | kedah | bacillus pumilus | species | 36 | 0 |
| malaysia | kelantan | bacillus pumilus | species | 12 | 0 |
| malaysia | kuala lumpur | bacillus pumilus | species | 57 | 0 |
| malaysia | melaka | bacillus pumilus | species | 175 | 0 |
| malaysia | negeri sembilan | bacillus pumilus | species | 21 | 0 |
| malaysia | pahang | bacillus pumilus | species | 8 | 0 |
| malaysia | perak | bacillus pumilus | species | 10 | 0 |
| malaysia | perlis | bacillus pumilus | species | 11 | 0 |
| malaysia | putrajaya | bacillus pumilus | species | 3 | 0 |
| malaysia | sabah | bacillus pumilus | species | 4 | 0 |
| malaysia | selangor | bacillus pumilus | species | 33 | 0 |
| malaysia | terengganu | bacillus pumilus | species | 14 | 0 |
| mali | | bacillus pumilus | species | 4 | 0 |
| mauritius | | bacillus pumilus | species | 1 | 0 |
| mexico | | bacillus pumilus | species | 372 | 0 |
| mexico | campeche | bacillus pumilus | species | 3 | 0 |
| mexico | coahuila zaragoza | bacillus pumilus | species | 12 | 0 |
| mexico | jalisco | bacillus pumilus | species | 8 | 0 |
| mexico | mexico | bacillus pumilus | species | 6 | 0 |
| mexico | michoacan ocampo | bacillus pumilus | species | 7 | 0 |
| mexico | puebla | bacillus pumilus | species | 1 | 0 |
| mexico | sonora | bacillus pumilus | species | 570 | 0 |
| mexico | veracruz-llave | bacillus pumilus | species | 4 | 0 |
| morocco | | bacillus pumilus | species | 12 | 0 |
| morocco | fes-boulemane | bacillus pumilus | species | 1 | 0 |
| morocco | rabat-sale-zemmour-zaer | bacillus pumilus | species | 1 | 0 |
| morocco | souss-massa-draa | bacillus pumilus | species | 1 | 0 |
| nepal | | bacillus pumilus | species | 4 | 0 |
| netherlands | | bacillus pumilus | species | 534 | 0 |
| netherlands | friesland province | bacillus pumilus | species | 1 | 0 |
| netherlands | south holland province | bacillus pumilus | species | 3 | 0 |
| new zealand | canterbury | bacillus pumilus | species | 1 | 0 |
| nicaragua | | bacillus pumilus | species | 1 | 0 |
| nigeria | | bacillus pumilus | species | 24 | 0 |
| nigeria | abia | bacillus pumilus | species | 1 | 0 |
| nigeria | lagos | bacillus pumilus | species | 1 | 0 |
| norway | | bacillus pumilus | species | 1 | 0 |
| oman | | bacillus pumilus | species | 1 | 0 |
| pakistan | | bacillus pumilus | species | 61 | 0 |
| pakistan | islamabad capital territory | bacillus pumilus | species | 1 | 0 |
| pakistan | punjab province | bacillus pumilus | species | 25 | 0 |
| pakistan | sindh province | bacillus pumilus | species | 70 | 0 |
| peru | | bacillus pumilus | species | 4 | 0 |
| peru | lima region | bacillus pumilus | species | 1 | 0 |
| philippines | | bacillus pumilus | species | 7 | 0 |
| philippines | calabarzon region | bacillus pumilus | species | 11 | 0 |
| poland | | bacillus pumilus | species | 11 | 0 |
| poland | greater poland province | bacillus pumilus | species | 1 | 0 |
| poland | lesser poland province | bacillus pumilus | species | 1 | 0 |
| poland | pomorskie province | bacillus pumilus | species | 1 | 0 |
| portugal | | bacillus pumilus | species | 18 | 0 |
| portugal | madeira autonomous region | bacillus pumilus | species | 1 | 0 |
| portugal | santarem district | bacillus pumilus | species | 1 | 0 |
| republic of the congo | | bacillus pumilus | species | 1 | 0 |
| romania | | bacillus pumilus | species | 2 | 0 |
| russia | | bacillus pumilus | species | 29 | 0 |
| russia | altai krai | bacillus pumilus | species | 1 | 0 |
| russia | kamchatka krai | bacillus pumilus | species | 1 | 0 |
| russia | leningrad oblast | bacillus pumilus | species | 134 | 0 |
| russia | moscow city | bacillus pumilus | species | 1 | 0 |
| russia | novosibirsk oblast | bacillus pumilus | species | 127 | 0 |
| russia | primorsky krai | bacillus pumilus | species | 1 | 0 |
| russia | sverdlovsk oblast | bacillus pumilus | species | 68 | 0 |
| russia | tatarstan republic | bacillus pumilus | species | 155 | 0 |
| russia | ulyanovsk oblast | bacillus pumilus | species | 11 | 0 |
| rwanda | | bacillus pumilus | species | 1 | 0 |
| saudi arabia | | bacillus pumilus | species | 7 | 0 |
| saudi arabia | jizan region | bacillus pumilus | species | 2 | 0 |
| saudi arabia | makkah region | bacillus pumilus | species | 4 | 0 |
| senegal | dakar region | bacillus pumilus | species | 1 | 0 |
| serbia | | bacillus pumilus | species | 14 | 0 |
| singapore | | bacillus pumilus | species | 7 | 0 |
| slovakia | | bacillus pumilus | species | 1 | 0 |
| slovakia | presov region | bacillus pumilus | species | 1 | 0 |
| slovenia | | bacillus pumilus | species | 2 | 0 |
| south africa | | bacillus pumilus | species | 31 | 0 |
| south africa | eastern cape province | bacillus pumilus | species | 220 | 1 |
| south africa | free state province | bacillus pumilus | species | 1 | 0 |
| south africa | kwazulu-natal province | bacillus pumilus | species | 2 | 0 |
| south korea | | bacillus pumilus | species | 27 | 0 |
| south korea | gangwon province | bacillus pumilus | species | 1 | 0 |
| south korea | north jeolla province | bacillus pumilus | species | 1 | 0 |
| south korea | seoul city | bacillus pumilus | species | 1 | 0 |
| south korea | south gyeongsang province | bacillus pumilus | species | 2 | 0 |
| south korea | ulsan city | bacillus pumilus | species | 7 | 0 |
| spain | | bacillus pumilus | species | 4 | 0 |
| spain | andalusia | bacillus pumilus | species | 128 | 0 |
| spain | cantabria | bacillus pumilus | species | 9 | 0 |
| sri lanka | | bacillus pumilus | species | 7 | 0 |
| sudan | khartoum | bacillus pumilus | species | 1 | 0 |
| sweden | | bacillus pumilus | species | 12 | 0 |
| switzerland | | bacillus pumilus | species | 4 | 0 |
| syria | damascus governorate | bacillus pumilus | species | 2 | 0 |
| taiwan | | bacillus pumilus | species | 2 | 1 |
| thailand | | bacillus pumilus | species | 10 | 0 |
| thailand | kanchanaburi province | bacillus pumilus | species | 2 | 0 |
| thailand | maha sarakham province | bacillus pumilus | species | 1 | 0 |
| thailand | songkhla province | bacillus pumilus | species | 2 | 0 |
| thailand | trang province | bacillus pumilus | species | 1 | 0 |
| tunisia | | bacillus pumilus | species | 20 | 0 |
| tunisia | sfax governorate | bacillus pumilus | species | 1 | 0 |
| turkey | | bacillus pumilus | species | 56 | 0 |
| turkey | balikesir province | bacillus pumilus | species | 2 | 0 |
| turkey | bursa province | bacillus pumilus | species | 1 | 0 |
| turkey | erzurum province | bacillus pumilus | species | 3 | 0 |
| turkey | izmir province | bacillus pumilus | species | 2 | 0 |
| turkey | konya province | bacillus pumilus | species | 1 | 0 |
| ukraine | | bacillus pumilus | species | 19 | 0 |
| united kingdom | england | bacillus pumilus | species | 77 | 0 |
| united kingdom | scotland | bacillus pumilus | species | 10 | 0 |
| united states | | bacillus pumilus | species | 258 | 0 |
| united states | california | bacillus pumilus | species | 542 | 0 |
| united states | colorado | bacillus pumilus | species | 1 | 0 |
| united states | delaware | bacillus pumilus | species | 0 | 1 |
| united states | florida | bacillus pumilus | species | 60 | 0 |
| united states | hawaii | bacillus pumilus | species | 1 | 0 |
| united states | idaho | bacillus pumilus | species | 2 | 0 |
| united states | illinois | bacillus pumilus | species | 1 | 0 |
| united states | maryland | bacillus pumilus | species | 0 | 1 |
| united states | montana | bacillus pumilus | species | 0 | 1 |
| united states | nebraska | bacillus pumilus | species | 1 | 0 |
| united states | new hampshire | bacillus pumilus | species | 366 | 0 |
| united states | new york | bacillus pumilus | species | 2 | 0 |
| united states | north carolina | bacillus pumilus | species | 3 | 0 |
| united states | pennsylvania | bacillus pumilus | species | 1 | 0 |
| united states | rhode island | bacillus pumilus | species | 62 | 0 |
| united states | south dakota | bacillus pumilus | species | 0 | 1 |
| united states | texas | bacillus pumilus | species | 2 | 0 |
| united states | utah | bacillus pumilus | species | 5 | 0 |
| united states | virginia | bacillus pumilus | species | 18 | 1 |
| united states | washington | bacillus pumilus | species | 0 | 2 |
| united states | wisconsin | bacillus pumilus | species | 10 | 0 |
| uruguay | | bacillus pumilus | species | 5 | 0 |
| venezuela | | bacillus pumilus | species | 2 | 0 |
| vietnam | | bacillus pumilus | species | 3 | 0 |
| vietnam | khanh hoa province | bacillus pumilus | species | 3 | 0 |
| vietnam | vinh long province | bacillus pumilus | species | 6 | 0 |