| brazil | | uncultured methylophilus sp. | species | 1 | 0 |
| brazil | rio de janeiro | uncultured methylophilus sp. | species | 1 | 0 |
| china | | uncultured methylophilus sp. | species | 11 | 0 |
| china | hunan | uncultured methylophilus sp. | species | 6 | 0 |
| china | jiangsu | uncultured methylophilus sp. | species | 5 | 0 |
| china | shanghai shi | methylophilus sp. twe2 | species | 2 | 0 |
| france | auvergne region | uncultured methylophilus sp. | species | 1 | 0 |
| greenland | | methylophilus sp. umb 17 | species | 1 | 0 |
| india | | methylophilus luteus | species | 1 | 0 |
| india | | methylophilus methylotrophus | species | 1 | 0 |
| india | uttar pradesh | methylophilus sp. bnv 7b | species | 1 | 0 |
| indonesia | | methylophilus leisingeri | species | 4 | 0 |
| indonesia | | uncultured methylophilus sp. | species | 1 | 0 |
| japan | | methylophilus flavus | species | 2 | 0 |
| japan | | methylophilus luteus | species | 1 | 0 |
| japan | | methylophilus methylotrophus | species | 1 | 0 |
| japan | | methylophilus sp. ma07 | species | 1 | 0 |
| japan | | methylophilus sp. ma09 | species | 1 | 0 |
| japan | | uncultured methylophilus sp. | species | 1 | 0 |
| japan | ehime prefecture | uncultured methylophilus sp. | species | 3 | 0 |
| japan | kanagawa prefecture | uncultured methylophilus sp. | species | 1 | 0 |
| japan | kyoto prefecture | uncultured methylophilus sp. | species | 1 | 0 |
| japan | osaka prefecture | methylophilus sp. | species | 2 | 0 |
| japan | yamanashi prefecture | methylophilus sp. | species | 6 | 0 |
| mexico | | uncultured methylophilus sp. | species | 1 | 0 |
| myanmar | | methylophilus methylotrophus | species | 1 | 0 |
| norway | | uncultured methylophilus sp. | species | 1 | 0 |
| pakistan | punjab province | uncultured methylophilus sp. | species | 1 | 0 |
| russia | | methylophilus aquaticus | species | 1 | 0 |
| russia | | methylophilus sp. | species | 1 | 0 |
| russia | | methylophilus sp. enrichment culture | species | 1 | 0 |
| russia | kamchatka krai | methylophilus aquaticus | species | 2 | 0 |
| russia | novosibirsk oblast | uncultured methylophilus sp. | species | 1 | 0 |
| singapore | | uncultured methylophilus sp. | species | 1 | 0 |
| south korea | | uncultured methylophilus sp. | species | 3 | 0 |
| south korea | gangwon province | uncultured methylophilus sp. | species | 5 | 0 |
| south korea | north chungcheong province | uncultured methylophilus sp. | species | 1 | 0 |
| spain | | methylophilus sp. enrichment culture clone vma42 | species | 1 | 0 |
| spain | | methylophilus sp. enrichment culture clone vma62 | species | 1 | 0 |
| spain | | methylophilus sp. enrichment culture clone vma9 | species | 1 | 0 |
| spain | | methylophilus sp. vmb4 | species | 1 | 0 |
| spain | | methylophilus sp. vmb6 | species | 1 | 0 |
| spain | | methylophilus sp. vmb9 | species | 1 | 0 |
| sweden | | uncultured methylophilus sp. | species | 1 | 0 |
| switzerland | zurich region | methylophilus sp. leaf414 | species | 11 | 0 |
| switzerland | zurich region | methylophilus sp. leaf416 | species | 10 | 0 |
| switzerland | zurich region | methylophilus sp. leaf459 | species | 18 | 0 |
| united kingdom | | uncultured methylophilus sp. | species | 1 | 0 |
| united states | illinois | methylophilus sp. | species | 45 | 0 |
| united states | washington | methylophilus methylotrophus | species | 1 | 0 |
| vietnam | | methylophilus glucosoxydans | species | 3 | 0 |