| australia | new south wales | influenza d virus | species | 8 | 0 |
| brazil | rio grande do sul | influenza d virus | species | 5 | 0 |
| canada | | influenza d virus | species | 35 | 0 |
| china | | influenza d virus | species | 20 | 0 |
| china | | influenza d virus (d/bovine/shandong/y125/2014) | no rank | 7 | 0 |
| china | | influenza d virus (d/bovine/shandong/y127/2014) | no rank | 7 | 0 |
| china | | influenza d virus (d/bovine/shandong/y217/2014) | no rank | 7 | 0 |
| china | guangdong | influenza d virus | species | 1 | 1 |
| china | guangdong | influenza d virus (d/bovine/guangdong/lg2/2016) | no rank | 1 | 0 |
| china | guangdong | influenza d virus (d/bovine/guangdong/lg5/2016) | no rank | 1 | 0 |
| china | guangdong | influenza d virus (d/bovine/guangdong/lg9/2016) | no rank | 1 | 0 |
| china | guangdong | influenza d virus (d/bovine/guangdong/ns1/2016) | no rank | 1 | 0 |
| china | guangdong | influenza d virus (d/bovine/guangdong/py1/2016) | no rank | 1 | 0 |
| china | guangdong | influenza d virus (d/bovine/guangdong/qq1/2016) | no rank | 1 | 0 |
| china | guangdong | influenza d virus (d/bovine/guangdong/qq12/2016) | no rank | 1 | 0 |
| china | guangdong | influenza d virus (d/bovine/guangdong/qq4/2016) | no rank | 1 | 0 |
| china | guangdong | influenza d virus (d/bovine/guangdong/qq7/2016) | no rank | 1 | 0 |
| china | guangdong | influenza d virus (d/bovine/guangdong/rs1/2016) | no rank | 1 | 0 |
| china | guangdong | influenza d virus (d/bovine/guangdong/rs4/2016) | no rank | 1 | 0 |
| china | guangdong | influenza d virus (d/caprine/guangdong/jk1/2016) | no rank | 1 | 0 |
| china | guangdong | influenza d virus (d/swine/guangdong/p14/2016) | no rank | 1 | 0 |
| china | guangdong | influenza d virus (d/swine/guangdong/p8/2016) | no rank | 1 | 0 |
| china | guangdong | influenza d virus (d/swine/guangdong/ps1/2016) | no rank | 1 | 0 |
| china | guangdong | influenza d virus (d/swine/guangdong/u1/2016) | no rank | 1 | 0 |
| china | guangdong | influenza d virus (d/swine/guangdong/u16/2016) | no rank | 1 | 0 |
| china | guangdong | influenza d virus (d/swine/guangdong/ys1/2016) | no rank | 1 | 0 |
| china | guangdong | influenza d virus (d/swine/guangdong/ys2/2016) | no rank | 1 | 0 |
| denmark | | influenza d virus | species | 113 | 0 |
| france | | influenza d virus | species | 157 | 0 |
| france | | influenza d virus (d/bovine/france/5920/2014) | no rank | 7 | 0 |
| ireland | | influenza d virus (d/bovine/ireland/007780/2014) | no rank | 3 | 0 |
| ireland | | influenza d virus (d/bovine/ireland/010807/2016) | no rank | 3 | 0 |
| ireland | | influenza d virus (d/bovine/ireland/023638/2016) | no rank | 3 | 0 |
| ireland | | influenza d virus (d/bovine/ireland/037157/2015) | no rank | 2 | 0 |
| ireland | | influenza d virus (d/bovine/ireland/082301/2014) | no rank | 3 | 0 |
| italy | | influenza d virus | species | 486 | 0 |
| italy | | influenza d virus (d/bovine/italy/1/2014) | no rank | 7 | 0 |
| italy | | influenza d virus (d/bovine/italy/46484/2015) | no rank | 7 | 0 |
| italy | | influenza d virus (d/swine/italy/173287-4/2016) | no rank | 7 | 0 |
| italy | | influenza d virus (d/swine/italy/199724-3/2015) | no rank | 7 | 0 |
| italy | | influenza d virus (d/swine/italy/254578/2015) | no rank | 7 | 0 |
| italy | | influenza d virus (d/swine/italy/268344-2/2015) | no rank | 7 | 0 |
| italy | | influenza d virus (d/swine/italy/354017/2015) | no rank | 8 | 0 |
| japan | | influenza d virus | species | 7 | 0 |
| japan | | influenza d virus (d/bovine/ibaraki/7768/2016) | no rank | 7 | 0 |
| japan | hokkaido prefecture | influenza d virus | species | 21 | 0 |
| japan | miyazaki prefecture | influenza d virus (d/bovine/miyazaki/b22/2016) | no rank | 7 | 0 |
| japan | yamagata prefecture | influenza d virus | species | 7 | 0 |
| japan | yamagata prefecture | influenza d virus (d/bovine/yamagata/10710/2016) | no rank | 7 | 0 |
| luxembourg | | influenza d virus | species | 6 | 0 |
| mexico | | influenza d virus (d/bovine/mexico/s56/2015) | no rank | 7 | 0 |
| mexico | | influenza d virus (d/bovine/mexico/s62/2015) | no rank | 7 | 0 |
| mexico | | influenza d virus (d/bovine/mexico/s7/2015) | no rank | 7 | 0 |
| mexico | | influenza d virus (d/bovine/mexico/s8/2015) | no rank | 7 | 0 |
| namibia | otjozondjupa region | influenza d virus | species | 1 | 0 |
| turkey | | influenza d virus | species | 1 | 0 |
| united kingdom | | influenza d virus | species | 7 | 0 |
| united states | | influenza d virus | species | 84 | 0 |
| united states | | influenza d virus (d/bovine/kansas/11-8/2012) | no rank | 7 | 0 |
| united states | | influenza d virus (d/bovine/kansas/13-21/2012) | no rank | 7 | 0 |
| united states | | influenza d virus (d/bovine/kansas/1-35/2010) | no rank | 7 | 0 |
| united states | | influenza d virus (d/bovine/kansas/14-22/2012) | no rank | 7 | 0 |
| united states | | influenza d virus (d/bovine/minnesota/628/2013) | no rank | 7 | 0 |
| united states | | influenza d virus (d/bovine/minnesota/729/2013) | no rank | 7 | 0 |
| united states | | influenza d virus (d/bovine/nebraska/9-5/2012) | no rank | 7 | 0 |
| united states | | influenza d virus (d/bovine/oklahoma/660/2013) | no rank | 7 | 0 |
| united states | | influenza d virus (d/bovine/texas/3-13/2011) | no rank | 7 | 0 |
| united states | | influenza d virus (d/swine/oklahoma/1334/2011) | no rank | 7 | 0 |
| united states | california | influenza d virus | species | 1 | 0 |
| united states | kansas | influenza d virus | species | 5 | 0 |
| united states | kentucky | influenza d virus | species | 7 | 0 |
| united states | mississippi | influenza d virus | species | 214 | 1 |
| united states | mississippi | influenza d virus (d/bovine/mississippi/c00013n/2014) | no rank | 1 | 0 |
| united states | mississippi | influenza d virus (d/bovine/mississippi/c00014n/2014) | no rank | 1 | 0 |
| united states | mississippi | influenza d virus (d/bovine/mississippi/c00030p/2014) | no rank | 1 | 0 |
| united states | mississippi | influenza d virus (d/bovine/mississippi/c00046n/2014) | no rank | 7 | 0 |
| united states | nebraska | influenza d virus | species | 0 | 1 |
| united states | oklahoma | influenza d virus | species | 0 | 1 |
| united states | pennsylvania | influenza d virus | species | 3 | 0 |
| united states | texas | influenza d virus | species | 7 | 0 |
| united states | utah | influenza d virus | species | 1 | 0 |