| antarctica | | trematomus polyomavirus 1 | species | 2 | 0 |
| argentina | | bovine polyomavirus 2 | species | 2 | 0 |
| argentina | | bovine polyomavirus 3 | species | 1 | 0 |
| australia | queensland | avian polyomavirus | species | 0 | 1 |
| australia | south australia | tasmanian devil-associated polyoma-like virus 2 | species | 1 | 0 |
| australia | tasmania | tasmanian devil-associated polyomavirus 1 | species | 1 | 0 |
| australia | victoria | avian polyomavirus | species | 0 | 1 |
| bangladesh | | polyomavirus pgpyv-1 | species | 1 | 0 |
| bangladesh | | polyomavirus pgpyv-2 | species | 1 | 0 |
| bangladesh | | polyomavirus pgpyv-3 | species | 1 | 0 |
| bangladesh | | polyomavirus predict_pyv-31 | species | 3 | 0 |
| brazil | | akodon montensis polyomavirus | species | 2 | 0 |
| brazil | | calomys tener polyomavirus | species | 1 | 0 |
| brazil | | myocastor coypus polyomavirus 1 | species | 2 | 0 |
| brazil | | tadarida brasiliensis polyomavirus 1 | species | 2 | 0 |
| brazil | | tadarida brasiliensis polyomavirus 2 | species | 2 | 0 |
| brazil | rio grande do sul | porcine polyomavirus | species | 1 | 0 |
| cameroon | | pan troglodytes troglodytes polyomavirus 2 | species | 2 | 0 |
| china | | aselliscus stoliczkanus polyomavirus 1 | species | 1 | 0 |
| china | | avian polyomavirus | species | 3 | 0 |
| china | | bat polyomavirus | species | 197 | 0 |
| china | | cat associated lyon-iarc polyomavirus | species | 1 | 0 |
| china | | hipposideros larvatus polyomavirus 1 | species | 1 | 0 |
| china | | miniopterus schreibersi polyomavirus 3 | species | 1 | 0 |
| china | | miniopterus schreibersi polyomavirus 4 | species | 1 | 0 |
| china | | myotis davidii polyomavirus 1 | species | 1 | 0 |
| china | | myotis horsfieldii polyomavirus 1 | species | 1 | 0 |
| china | | myotis horsfieldii polyomavirus 2 | species | 1 | 0 |
| china | | myotis horsfieldii polyomavirus 3 | species | 1 | 0 |
| china | | pipistrellus pipistrellus polyomavirus 1 | species | 1 | 0 |
| china | | porcine polyomavirus | species | 13 | 0 |
| china | | rhinolophus affinis polyomavirus 1 | species | 3 | 0 |
| china | | rhinolophus affinis polyomavirus 2 | species | 1 | 0 |
| china | | rhinolophus affinis polyomavirus 3 | species | 7 | 0 |
| china | | rhinolophus affinis polyomavirus 4 | species | 3 | 0 |
| china | | rhinolophus affinis polyomavirus 5 | species | 1 | 0 |
| china | | rhinolophus ferrumequinum polyomavirus 1 | species | 1 | 0 |
| china | | rhinolophus ferrumequinum polyomavirus 2 | species | 1 | 0 |
| china | | rhinolophus ferrumequinum polyomavirus 3 | species | 2 | 0 |
| china | | rhinolophus pearsonii polyomavirus 1 | species | 1 | 0 |
| china | | rhinolophus pearsonii polyomavirus 2 | species | 1 | 0 |
| china | | rhinolophus sinicus polyomavirus 1 | species | 1 | 0 |
| china | | rhinolophus sinicus polyomavirus 2 | species | 1 | 0 |
| china | | rhinolophus sp. cn 2016 polyomavirus 1 | species | 1 | 0 |
| china | | rhinolophus thomasi polyomavirus 1 | species | 1 | 0 |
| china | | rhinolophus thomasi polyomavirus 2 | species | 1 | 0 |
| china | | rousettus leschenaultii polyomavirus 1 | species | 1 | 0 |
| china | | rousettus leschenaultii polyomavirus 2 | species | 1 | 0 |
| china | | scotophilus kuhlii polyomavirus 1 | species | 1 | 0 |
| china | | scotophilus kuhlii polyomavirus 2 | species | 1 | 0 |
| china | | scotophilus kuhlii polyomavirus 3 | species | 2 | 0 |
| china | | sheep polyomavirus 1 | species | 1 | 0 |
| china | | taphozous melanopogon polyomavirus 1 | species | 1 | 0 |
| china | | tree shrew polyomavirus 1 | species | 1 | 0 |
| china | guangxi | bat polyomavirus c1 | species | 1 | 0 |
| democratic republic of the congo | | gorilla beringei graueri polyomavirus 2 | species | 1 | 0 |
| democratic republic of the congo | | polyomavirus predict_pyv-28 | species | 1 | 0 |
| democratic republic of the congo | | polyomavirus predict_pyv-30 | species | 1 | 0 |
| democratic republic of the congo | | polyomavirus predict_pyv-32 | species | 1 | 0 |
| democratic republic of the congo | | polyomavirus predict_pyv-34 | species | 1 | 0 |
| french guiana | | bat polyomavirus | species | 8 | 0 |
| gabon | | pan troglodytes troglodytes polyomavirus 1 | species | 2 | 0 |
| gabon | | pan troglodytes troglodytes polyomavirus 2 | species | 1 | 0 |
| gabon | | polyomavirus predict_pyv-14 | species | 48 | 0 |
| gabon | | polyomavirus predict_pyv-15 | species | 4 | 0 |
| gabon | | polyomavirus predict_pyv-22 | species | 4 | 0 |
| gabon | | polyomavirus predict_pyv-23 | species | 5 | 0 |
| gabon | | polyomavirus predict_pyv-24 | species | 26 | 0 |
| gabon | | polyomavirus predict_pyv-25 | species | 129 | 0 |
| gabon | | polyomavirus predict_pyv-9 | species | 124 | 0 |
| germany | | bovine polyomavirus 2a | no rank | 2 | 0 |
| germany | | bovine polyomavirus 2b | no rank | 2 | 0 |
| germany | | sciurus variegatoides polyomavirus 1 | species | 1 | 0 |
| hungary | | rhinolophus euryale polyomavirus 1 | species | 1 | 0 |
| hungary | | rhinolophus hipposideros polyomavirus 1 | species | 1 | 0 |
| india | tamil nadu | simian virus 12 | species | 0 | 1 |
| indonesia | gorontalo province | bat polyomavirus 6d | species | 5 | 0 |
| ivory coast | | pan troglodytes verus polyomavirus 1b | no rank | 2 | 0 |
| japan | | bat polyomavirus | species | 1 | 0 |
| kenya | | chaerephon polyomavirus 1 | species | 2 | 0 |
| mexico | | mx polyomavirus | species | 1 | 0 |
| new zealand | | avian polyomavirus | species | 3 | 0 |
| new zealand | | polyomavirus mystacina/new zealand/2013 | species | 1 | 0 |
| rwanda | | gorilla polyomavirus 1 | species | 4 | 0 |
| rwanda | | gorilla polyomavirus 2 | species | 2 | 0 |
| rwanda | | polyomavirus predict_pyv-5 | species | 2 | 0 |
| rwanda | | polyomavirus predict_pyv-6 | species | 1 | 0 |
| rwanda | | polyomavirus predict_pyv-7 | species | 7 | 0 |
| saint vincent and the grenadines | | orca polyomavirus | species | 1 | 0 |
| saudi arabia | | bat polyomavirus | species | 2 | 0 |
| singapore | | polyomaviridae sp. | species | 1 | 0 |
| spain | | ovine polyomavirus | species | 2 | 0 |
| switzerland | | bovine polyomavirus 2 | species | 2 | 0 |
| taiwan | | avian polyomavirus | species | 1 | 1 |
| taiwan | | marbled eel polyomavirus | species | 5 | 0 |
| taiwan | taiwan municipality | marbled eel polyomavirus | species | 4 | 0 |
| uganda | | pan troglodytes schweinfurthii polyomavirus 3 | species | 1 | 0 |
| united arab emirates | | camel polyomavirus | species | 1 | 0 |
| united states | | bear-associated polyomavirus 1 | species | 1 | 0 |
| united states | | bovine polyomavirus 2a | no rank | 1 | 0 |
| united states | | bovine polyomavirus 2b | no rank | 1 | 0 |
| united states | | bovine polyomavirus 3 | species | 2 | 0 |
| united states | | california sea lion polyomavirus 2 | species | 1 | 0 |
| united states | | dolphin polyomavirus 1 | species | 2 | 0 |
| united states | | giant guitarfish polyomavirus 1 | species | 2 | 0 |
| united states | | polyomavirus gch-2015 | species | 1 | 0 |
| united states | | rangifer tarandus granti polyomavirus | species | 1 | 0 |
| united states | | sea otter polyomavirus 1 | species | 2 | 0 |
| united states | | sheep polyomavirus 1 | species | 2 | 0 |
| united states | | simian virus 12 | species | 2 | 0 |
| united states | arizona | scorpion polyomavirus 1 | species | 2 | 0 |
| united states | arizona | scorpion polyomavirus 2 | species | 3 | 0 |
| united states | arizona | scorpion polyomavirus 3 | species | 3 | 0 |
| united states | california | bovine polyomavirus 2 | species | 2 | 0 |
| united states | california | mx polyomavirus | species | 0 | 1 |
| united states | california | sea otter polyomavirus 1 | species | 0 | 1 |
| united states | minnesota | porcine polyomavirus | species | 2 | 0 |
| zambia | lusaka province | rhinolophus blasii polyomavirus 1 | species | 1 | 0 |
| zambia | lusaka province | rhinolophus blasii polyomavirus 2 | species | 2 | 0 |
| zambia | lusaka province | rhinolophus hildebrandtii polyomavirus 1 | species | 2 | 0 |
| zambia | lusaka province | rhinolophus simulator polyomavirus 1 | species | 2 | 0 |
| zambia | lusaka province | rhinolophus simulator polyomavirus 2 | species | 2 | 0 |
| zambia | lusaka province | rhinolophus simulator polyomavirus 3 | species | 2 | 0 |
| zambia | lusaka province | rhinolophus simulator polyomavirus 4 | species | 1 | 0 |