| [clostridium] fimetarium | Yes | species | bacteria | bacteria | species | 99656 | click here |
| [eubacterium] siraeum | Yes | species | bacteria | bacteria | species | 39492 | click here |
| acetatifactor muris | Yes | species | | | species | 879566 | click here |
| acetobacter sp. | Yes | species | bacteria | bacteria | species | 440 | click here |
| alistipes senegalensis | Yes | species | | | species | 1288121 | click here |
| alistipes sp. | Yes | species | | | species | 1872444 | click here |
| alistipes timonensis | Yes | species | | | species | 1465754 | click here |
| anaeroplasma bactoclasticum | Yes | species | bacteria | bacteria | species | 2088 | click here |
| anaplasma phagocytophilum | Yes | species | bacteria | bacteria | species | 948 | click here |
| arenavirus h0030026 | Yes | no rank | viruses and viroids | viruses | species | 767474 | click here |
| arenavirus h0030028 | Yes | no rank | viruses and viroids | viruses | species | 767475 | click here |
| bacillus cereus | Yes | species | bacteria | bacteria | species | 1396 | click here |
| bacillus sp. | Yes | species | bacteria | bacteria | species | 1409 | click here |
| bacterium | Yes | no rank | | | species | 1869227 | click here |
| bacterium bi108 | Yes | no rank | | | species | 1218601 | click here |
| bacterium bi111 | Yes | no rank | | | species | 1218602 | click here |
| bacterium bi112 | Yes | no rank | | | species | 1218603 | click here |
| bacterium bi117 | Yes | no rank | | | species | 1218604 | click here |
| bacterium bi120 | Yes | no rank | | | species | 1218605 | click here |
| bacterium bi122 | Yes | no rank | | | species | 1218606 | click here |
| bacterium bi136 | Yes | no rank | | | species | 1218607 | click here |
| bacterium bi137 | Yes | no rank | | | species | 1218608 | click here |
| bacterium bi139 | Yes | no rank | | | species | 1218609 | click here |
| bacteroidales bacterium | Yes | species | | | species | 2030927 | click here |
| bacteroides cellulosilyticus | Yes | species | bacteria | bacteria | species | 246787 | click here |
| bacteroides fragilis | Yes | species | bacteria | bacteria | species | 817 | click here |
| bacteroides sp. | Yes | no rank | bacteria | bacteria | species | 29523 | click here |
| bartonella sp. na234ro | Yes | no rank | | | species | 1514848 | click here |
| bartonella sp. na97ro | Yes | no rank | | | species | 1514849 | click here |
| baylisascaris procyonis | Yes | species | eukaryota | invertebrates | species | 6259 | click here |
| bear canyon mammarenavirus | No | species | viruses and viroids | viruses | species | 192848 | click here |
| bear canyon mammarenavirus | Yes | species | viruses and viroids | viruses | species | 192848 | click here |
| big brushy tank virus | Yes | no rank | viruses and viroids | viruses | no rank | 466144 | click here |
| blautia sp. | Yes | species | | | species | 1955243 | click here |
| borrelia hermsii | Yes | species | bacteria | bacteria | species | 140 | click here |
| borreliella bissettii | No | species | bacteria | bacteria | species | 64897 | click here |
| borreliella bissettii | Yes | species | bacteria | bacteria | species | 64897 | click here |
| borreliella burgdorferi | Yes | species | bacteria | bacteria | species | 139 | click here |
| borreliella carolinensis | Yes | species | bacteria | bacteria | species | 478174 | click here |
| borreliella garinii | Yes | species | bacteria | bacteria | species | 29519 | click here |
| brucella neotomae | Yes | species | bacteria | bacteria | species | 29460 | click here |
| butyrivibrio sp. | Yes | no rank | bacteria | bacteria | species | 28121 | click here |
| catarina virus | Yes | species | viruses and viroids | viruses | species | 404768 | click here |
| cheyletidae gen. sp. ad1058 | Yes | no rank | | | species | 2051802 | click here |
| clostridiales bacterium | Yes | species | | | species | 1898207 | click here |
| clostridium sp. | Yes | no rank | bacteria | bacteria | species | 1506 | click here |
| clostridium sporogenes | Yes | species | bacteria | bacteria | species | 1509 | click here |
| colorado tick fever virus | Yes | species | viruses and viroids | viruses | species | 46839 | click here |
| corallococcus sp. | Yes | species | | | species | 1898750 | click here |
| culex pipiens | Yes | species | eukaryota | invertebrates | species | 7175 | click here |
| culex quinquefasciatus | Yes | species | eukaryota | invertebrates | species | 7176 | click here |
| echinococcus multilocularis | Yes | species | eukaryota | invertebrates | species | 6211 | click here |
| el moro canyon orthohantavirus | Yes | species | | | species | 1980468 | click here |
| enterococcus gallinarum | Yes | species | bacteria | bacteria | species | 1353 | click here |
| environmental samples | Yes | | | environmental samples | no rank | 333811 | click here |
| environmental samples | Yes | | | environmental samples | no rank | 359183 | click here |
| environmental samples | Yes | | | | no rank | 1629145 | click here |
| escherichia coli | Yes | species | bacteria | bacteria | species | 562 | click here |
| eubacterium sp. | Yes | no rank | bacteria | bacteria | species | 142586 | click here |
| faecalibacterium sp. | Yes | species | | | species | 1971605 | click here |
| firmicutes bacterium | Yes | species | | | species | 1879010 | click here |
| francisella tularensis | Yes | species | bacteria | bacteria | species | 263 | click here |
| fusobacterium sp. | Yes | no rank | bacteria | bacteria | species | 68766 | click here |
| hantaan orthohantavirus | Yes | species | | | species | 1980471 | click here |
| hepatozoon sp. | Yes | species | | | species | 1484059 | click here |
| hepatozoon sp. ex neotoma fuscipes kea-2011 | Yes | no rank | | | species | 1080282 | click here |
| hepatozoon sp. ex neotoma micropus kea-2011 | Yes | no rank | | | species | 1080283 | click here |
| hydatigera taeniaeformis | Yes | species | eukaryota | invertebrates | species | 6205 | click here |
| lachnoclostridium sp. | Yes | species | | | species | 2028282 | click here |
| lachnospiraceae bacterium | Yes | species | | | species | 1898203 | click here |
| lactobacillus animalis | Yes | species | bacteria | bacteria | species | 1605 | click here |
| lactobacillus gasseri | Yes | species | bacteria | bacteria | species | 1596 | click here |
| lactobacillus johnsonii | Yes | species | bacteria | bacteria | species | 33959 | click here |
| lactobacillus reuteri | Yes | species | bacteria | bacteria | species | 1598 | click here |
| leishmania mexicana | Yes | species | eukaryota | invertebrates | species | 5665 | click here |
| middle pease river virus | Yes | species | | | species | 1237118 | click here |
| muribaculaceae bacterium | Yes | species | | | species | 2498093 | click here |
| neohaematopinus neotomae | Yes | species | eukaryota | invertebrates | species | 908921 | click here |
| neotoma cinerea papillomavirus 1 | Yes | species | | | species | 2268043 | click here |
| neotoma cinerea papillomavirus 2 | Yes | species | | | species | 2268044 | click here |
| north american arenavirus | No | no rank | viruses and viroids | viruses | no rank | 481887 | click here |
| north american arenavirus | Yes | no rank | viruses and viroids | viruses | no rank | 481887 | click here |
| north american arenavirus strain b0940005 | Yes | species | | | species | 1631796 | click here |
| north american arenavirus strain f0190012 | Yes | species | | | species | 1631758 | click here |
| north american arenavirus strain p0070018 | Yes | species | | | species | 1631759 | click here |
| ornithodoros turicata | No | species | eukaryota | invertebrates | species | 34597 | click here |
| oscillibacter sp. | Yes | species | | | species | 1945593 | click here |
| oxalobacter formigenes | Yes | species | bacteria | bacteria | species | 847 | click here |
| paenibacillus sp. | Yes | no rank | bacteria | bacteria | species | 58172 | click here |
| paludibacter sp. | Yes | species | | | species | 1898105 | click here |
| paramyxoviridae sp. | Yes | species | | | species | 1663356 | click here |
| paroniella sp. vh-2014 | Yes | no rank | | | species | 1573893 | click here |
| pichinde mammarenavirus | Yes | no rank | viruses and viroids | viruses | no rank | 2905917 | click here |
| prevotella sp. | Yes | no rank | bacteria | bacteria | species | 59823 | click here |
| rabies virus | Yes | species | viruses and viroids | viruses | species | 11292 | click here |
| real de catorce virus | Yes | no rank | | | no rank | 1095757 | click here |
| rio grande virus | Yes | species | viruses and viroids | viruses | species | 629740 | click here |
| rodent hepacivirus | Yes | species | viruses and viroids | viruses | species | 1281454 | click here |
| rodent pegivirus | Yes | species | viruses and viroids | viruses | species | 1321391 | click here |
| rodent stool-associated circular genome virus | Yes | species | | | species | 1074214 | click here |