| anaplasma bovis | No | species | bacteria | bacteria | species | 186733 | click here |
| anaplasma marginale | No | species | bacteria | bacteria | species | 770 | click here |
| anaplasma phagocytophilum | No | species | bacteria | bacteria | species | 948 | click here |
| anaplasma platys | No | species | bacteria | bacteria | species | 949 | click here |
| aspergillus fruticulosus | No | species | | | species | 1250369 | click here |
| aspergillus multicolor | No | species | eukaryota | plants | species | 41759 | click here |
| aspergillus niger | No | species | eukaryota | plants | species | 5061 | click here |
| aspergillus niveus | No | species | eukaryota | plants | species | 41281 | click here |
| aspergillus sydowii | No | species | eukaryota | plants | species | 75750 | click here |
| aureobasidium pullulans | No | species | eukaryota | plants | species | 5580 | click here |
| bifidobacterium pseudolongum subsp. globosum | No | subspecies | bacteria | bacteria | subspecies | 1690 | click here |
| blastocystis hominis | No | species | eukaryota | plants | species | 12968 | click here |
| blastocystis sp. subtype 12 | No | no rank | eukaryota | plants | species | 708183 | click here |
| bluetongue virus | No | species | viruses and viroids | viruses | species | 40051 | click here |
| border disease virus | No | species | viruses and viroids | viruses | species | 358764 | click here |
| botryosphaeria sp. 3d4 | No | no rank | | | species | 1622042 | click here |
| bovine ephemeral fever virus | No | species | viruses and viroids | viruses | species | 11303 | click here |
| bovine herpesvirus 1 | No | species | viruses and viroids | viruses | species | 10320 | click here |
| bovine papillomavirus | No | species | viruses and viroids | viruses | species | 10571 | click here |
| bovine papillomavirus type 1 | No | no rank | viruses and viroids | viruses | no rank | 10559 | click here |
| bovine parainfluenza virus 3 | No | species | viruses and viroids | viruses | species | 11215 | click here |
| bovine respiratory syncytial virus | No | species | viruses and viroids | viruses | species | 11246 | click here |
| bovine rotavirus | No | no rank | viruses and viroids | viruses | no rank | 10927 | click here |
| bovine rotavirus a unknown g-type | No | no rank | viruses and viroids | viruses | no rank | 195480 | click here |
| bovine spongiform encephalopathy agent | No | species | | | species | | click here |
| bovine viral diarrhea virus 1 | No | species | viruses and viroids | viruses | species | 11099 | click here |
| calf-giraffe coronavirus us/oh3/2006 | No | no rank | viruses and viroids | viruses | no rank | 422140 | click here |
| calonectria sp. gf9c3 | No | no rank | | | species | 1622047 | click here |
| camelostrongylus mentulatus | No | species | eukaryota | invertebrates | species | 53334 | click here |
| coxiella burnetii | No | species | bacteria | bacteria | species | 777 | click here |
| crimean-congo hemorrhagic fever orthonairovirus | No | species | | | species | 1980519 | click here |
| cryptosporidium muris | No | species | eukaryota | invertebrates | species | 5808 | click here |
| curvularia lunata | No | species | eukaryota | plants | species | 5503 | click here |
| deltapapillomavirus 4 | No | species | viruses and viroids | viruses | species | 337052 | click here |
| didymosphaeriaceae sp. 3c8 | No | no rank | | | species | 1622048 | click here |
| dothideomycetes sp. gf9c2 | No | no rank | | | species | 1622049 | click here |
| ehrlichia ruminantium | No | species | bacteria | bacteria | species | 779 | click here |
| enterocytozoon bieneusi | No | species | eukaryota | plants | species | 31281 | click here |
| environmental samples | No | | | environmental samples | no rank | 333811 | click here |
| environmental samples | No | | | environmental samples | no rank | 359183 | click here |
| environmental samples | No | | | | no rank | 1629145 | click here |
| epicoccum sorghinum | No | species | eukaryota | plants | species | 749593 | click here |
| equid herpesvirus 1 | No | species | viruses and viroids | viruses | species | 10326 | click here |
| equid herpesvirus 9 | No | species | viruses and viroids | viruses | species | 55744 | click here |
| escherichia coli | No | species | bacteria | bacteria | species | 562 | click here |
| foot-and-mouth disease virus | No | species | viruses and viroids | viruses | species | 12110 | click here |
| fusarium equiseti | No | species | eukaryota | plants | species | 61235 | click here |
| fusarium sp. 3c4 | No | no rank | | | species | 1622043 | click here |
| fusarium sp. gf8c2 | No | no rank | | | species | 1622044 | click here |
| fusarium sp. gf9c4 | No | no rank | | | species | 1622045 | click here |
| fusobacterium necrophorum | No | species | bacteria | bacteria | species | 859 | click here |
| giardia intestinalis | No | species | eukaryota | invertebrates | species | 5741 | click here |
| giraffa camelopardalis papillomavirus 1 | No | no rank | | | no rank | 1922325 | click here |
| giraffe coronavirus us/oh3/2003 | No | no rank | viruses and viroids | viruses | no rank | 422139 | click here |
| giraffe coronavirus us/oh3-tc/2006 | No | no rank | viruses and viroids | viruses | no rank | 422141 | click here |
| haemonchus contortus | No | species | eukaryota | invertebrates | species | 6289 | click here |
| klebsiella sp. kg1 | No | no rank | bacteria | bacteria | species | 126342 | click here |
| lawsonia intracellularis | No | species | bacteria | bacteria | species | 29546 | click here |
| lumpy skin disease virus | No | species | viruses and viroids | viruses | species | 59509 | click here |
| margaropus reidi | No | species | | | species | | click here |
| marshallagia marshalli | No | species | eukaryota | invertebrates | species | 106947 | click here |
| mycobacterium bovis | No | species | bacteria | bacteria | species | 1765 | click here |
| mycobacterium parascrofulaceum | No | species | bacteria | bacteria | species | 240125 | click here |
| mycobacterium tuberculosis | No | species | bacteria | bacteria | species | 1773 | click here |
| mycobacterium vanbaalenii | No | species | bacteria | bacteria | species | 110539 | click here |
| nairobi sheep disease virus | No | no rank | viruses and viroids | viruses | no rank | 194540 | click here |
| neocallimastix cameroonii | No | species | | | species | 1764037 | click here |
| neopestalotiopsis clavispora | No | species | eukaryota | plants | species | 289240 | click here |
| ostertagia ostertagi | No | species | eukaryota | invertebrates | species | 6317 | click here |
| parabronema skrjabini | No | species | eukaryota | invertebrates | species | 499165 | click here |
| parabronema skrjabini | Yes | species | eukaryota | invertebrates | species | 499165 | click here |
| penicillium citrinum | No | species | eukaryota | plants | species | 5077 | click here |
| penicillium commune | No | species | eukaryota | plants | species | 36653 | click here |
| penicillium simplicissimum | No | species | eukaryota | plants | species | 69488 | click here |
| pestivirus giraffe-1 | No | no rank | viruses and viroids | viruses | species | 155905 | click here |
| pestivirus giraffe-1 h138 | No | no rank | viruses and viroids | viruses | no rank | 119222 | click here |
| pestivirus sp. | No | species | viruses and viroids | viruses | species | 31657 | click here |
| phoma sp. gf8c4 | No | no rank | | | species | 1622046 | click here |
| pilobolus pullus | No | species | | | species | 1078478 | click here |
| piromyces sp. af-cts-gcp1 | No | no rank | eukaryota | plants | species | 579100 | click here |
| pithomyces chartarum | No | species | | | species | 1547544 | click here |
| pseudomonas aeruginosa | No | species | bacteria | bacteria | species | 287 | click here |
| rift valley fever phlebovirus | No | species | | | species | 1933187 | click here |
| rinderpest virus | No | species | viruses and viroids | viruses | species | 11241 | click here |
| rotavirus a | No | species | viruses and viroids | viruses | species | 28875 | click here |
| rotavirus a giraffe/ucd/irl/2007 | No | no rank | viruses and viroids | viruses | no rank | 705080 | click here |
| salmonella enterica | No | species | bacteria | bacteria | species | 28901 | click here |
| setaria labiatopapillosa | No | species | eukaryota | invertebrates | species | 108094 | click here |
| setosphaeria rostrata | No | species | eukaryota | plants | species | 45150 | click here |
| severe acute respiratory syndrome coronavirus 2 | No | no rank | | | no rank | 2697049 | click here |
| sindbis virus | No | species | viruses and viroids | viruses | species | 11034 | click here |
| spiculopteragia asymmetrica | No | species | eukaryota | invertebrates | species | 108475 | click here |
| teladorsagia circumcincta | No | species | eukaryota | invertebrates | species | 45464 | click here |
| teladorsagia trifurcata | No | species | | | species | 1213752 | click here |
| theileria luwenshuni | No | species | eukaryota | invertebrates | species | 540482 | click here |
| theileria sp. giraffe 115 | No | no rank | | | species | 1072349 | click here |
| theileria sp. giraffe 30 | No | no rank | | | species | 1072351 | click here |
| theileria sp. giraffe 63 | No | no rank | | | species | 1072355 | click here |
| theileria sp. giraffe 66 | No | no rank | | | species | 1072353 | click here |
| theileria sp. giraffe 86 | No | no rank | | | species | 1072347 | click here |