| amblyomma geoemydae | Yes | species | | | species | 1325863 | click here |
| anaplasma bovis | Yes | species | bacteria | bacteria | species | 186733 | click here |
| aspergillus flavus | Yes | species | eukaryota | plants | species | 5059 | click here |
| bacillus subtilis | Yes | species | bacteria | bacteria | species | 1423 | click here |
| bartonella sp. tg18695tl | Yes | no rank | bacteria | bacteria | species | 613098 | click here |
| bartonella sp. tg18773 | Yes | no rank | bacteria | bacteria | species | 593009 | click here |
| bartonella sp. tg19447tl | Yes | no rank | bacteria | bacteria | species | 593010 | click here |
| borna disease virus | Yes | species | viruses and viroids | viruses | species | 12455 | click here |
| borreliella yangtze | Yes | species | | | species | 683292 | click here |
| chaos carolinense | Yes | species | eukaryota | invertebrates | species | 160823 | click here |
| coxiella endosymbiont of ixodes sp. | Yes | species | | | species | 1656164 | click here |
| coxiella-like endosymbiont | Yes | no rank | | | species | 1592897 | click here |
| cryptococcus neoformans | Yes | species | eukaryota | plants | species | 5207 | click here |
| dengue virus | Yes | species | viruses and viroids | viruses | species | 12637 | click here |
| enterococcus faecalis | Yes | species | bacteria | bacteria | species | 1351 | click here |
| enterovirus a71 | Yes | no rank | viruses and viroids | viruses | no rank | 39054 | click here |
| escherichia coli | Yes | species | bacteria | bacteria | species | 562 | click here |
| h1n1 subtype | Yes | no rank | viruses and viroids | viruses | no rank | 114727 | click here |
| h5n1 subtype | Yes | no rank | viruses and viroids | viruses | no rank | 102793 | click here |
| h7n9 subtype | Yes | no rank | viruses and viroids | viruses | no rank | 333278 | click here |
| hendra virus | Yes | species | viruses and viroids | viruses | species | 63330 | click here |
| hepatitis b virus | Yes | species | viruses and viroids | viruses | species | 10407 | click here |
| hepatitis c virus | Yes | species | viruses and viroids | viruses | species | 11103 | click here |
| hepatitis delta virus | Yes | species | viruses and viroids | viruses | species | 12475 | click here |
| human adenovirus | Yes | species | | | species | 1907210 | click here |
| human herpesvirus 1 | Yes | species | viruses and viroids | viruses | species | 10298 | click here |
| human herpesvirus 2 | Yes | species | viruses and viroids | viruses | species | 10310 | click here |
| human herpesvirus 4 | Yes | species | viruses and viroids | viruses | species | 10376 | click here |
| human rotavirus | Yes | species | | | species | 1906931 | click here |
| hymenolepis diminuta | Yes | species | eukaryota | invertebrates | species | 6216 | click here |
| influenza a virus | Yes | species | viruses and viroids | viruses | species | 11320 | click here |
| influenza b virus | Yes | species | viruses and viroids | viruses | species | 11520 | click here |
| ixodes granulatus | No | species | eukaryota | invertebrates | species | 59647 | click here |
| kurthia gibsonii | Yes | species | bacteria | bacteria | species | 33946 | click here |
| leptospira sp. | Yes | species | bacteria | bacteria | species | 178 | click here |
| malayfilaria sofiani | Yes | species | | | species | 1982692 | click here |
| mammalian orthoreovirus | No | species | viruses and viroids | viruses | species | 351073 | click here |
| mammalian orthoreovirus | Yes | species | viruses and viroids | viruses | species | 351073 | click here |
| measles virus | Yes | species | viruses and viroids | viruses | species | 11234 | click here |
| merkel cell polyomavirus | Yes | species | viruses and viroids | viruses | species | 493803 | click here |
| micrococcus luteus | Yes | species | bacteria | bacteria | species | 1270 | click here |
| mycobacterium leprae | Yes | species | bacteria | bacteria | species | 1769 | click here |
| mycobacterium tuberculosis | Yes | species | bacteria | bacteria | species | 1773 | click here |
| neisseria mucosa | Yes | species | bacteria | bacteria | species | 488 | click here |
| orientia tsutsugamushi | Yes | species | bacteria | bacteria | species | 784 | click here |
| orthohepevirus a | Yes | species | | | species | 1678143 | click here |
| pegivirus sp. | Yes | species | | | species | 2498143 | click here |
| pneumocystis carinii | Yes | species | eukaryota | plants | species | 4754 | click here |
| porcine epidemic diarrhea virus | Yes | species | viruses and viroids | viruses | species | 28295 | click here |
| pseudomonas aeruginosa | Yes | species | bacteria | bacteria | species | 287 | click here |
| rat mammarenavirus | Yes | species | | | species | 2479483 | click here |
| sathrax durus | Yes | species | eukaryota | invertebrates | species | 908933 | click here |
| schistosoma mansoni | Yes | species | eukaryota | invertebrates | species | 6183 | click here |
| schistosoma sinensium | Yes | species | eukaryota | invertebrates | species | 191505 | click here |
| serratia sp. ts26-8 | Yes | no rank | bacteria | bacteria | species | 644285 | click here |
| severe acute respiratory syndrome coronavirus 2 | Yes | no rank | | | no rank | 2697049 | click here |
| shrew pegivirus | Yes | species | | | species | 1281453 | click here |
| staphylococcus aureus | Yes | species | bacteria | bacteria | species | 1280 | click here |
| torque teno tupaia virus | Yes | species | viruses and viroids | viruses | species | 687381 | click here |
| torque teno virus | Yes | species | viruses and viroids | viruses | species | 68887 | click here |
| toxoplasma gondii | Yes | species | eukaryota | invertebrates | species | 5811 | click here |
| tree shrew adenovirus 1 | Yes | no rank | viruses and viroids | viruses | no rank | 47680 | click here |
| tree shrew adenovirus a | Yes | species | viruses and viroids | viruses | species | 242710 | click here |
| tree shrew papillomavirus 1 | Yes | species | | | species | 2562515 | click here |
| tree shrew papillomavirus 2 | Yes | species | | | species | 2562516 | click here |
| tree shrew polyomavirus 1 | Yes | species | | | species | 2562517 | click here |
| tritrichomonas mobilensis | Yes | species | eukaryota | invertebrates | species | 56778 | click here |
| tupaia glis polyomavirus 1 | Yes | species | | | species | 2170402 | click here |
| tupaia hepatovirus a | Yes | species | | | species | 1768064 | click here |
| tupaia paramyxovirus | Yes | species | viruses and viroids | viruses | species | 92129 | click here |
| tupaiid herpesvirus 1 | Yes | species | viruses and viroids | viruses | species | 10397 | click here |
| uncultured bartonella sp. | Yes | no rank | bacteria | environmental samples | species | 104108 | click here |
| woolly monkey hepatitis b virus | Yes | species | viruses and viroids | viruses | species | 68416 | click here |
| wuchereria bancrofti | Yes | species | eukaryota | invertebrates | species | 6293 | click here |
| zika virus | Yes | species | viruses and viroids | viruses | species | 64320 | click here |