Publications

TitleAbstractYear(sorted descending)
Filter
PMID
Filter
rapid detection of porcine parvovirus dna by sensitive loop-mediated isothermal amplification.a method of loop-mediated isothermal amplification (lamp) was employed to develop a rapid and simple detection system for porcine parvovirus (ppv) dna. the amplification could be finished in 45 min under isothermal condition at 62 degrees c by employing a set of four primers targeting vp2 gene of ppv. lamp assay showed higher sensitivity than pcr, with a detection limit of 5 copies of ppv genomic dna per reaction. no cross reactivity was observed from the samples of other related viruses includi ...200919428576
further characterization of a new recombinant group of plum pox virus isolates, ppv-t, found in orchards in the ankara province of turkey.sixteen plum pox virus (ppv) isolates collected in the ankara region of turkey were analyzed using available serological and molecular typing assays. surprisingly, despite the fact that all isolates except one, which was a mix infection, were typed as belonging to the ppv-m strain in four independent molecular assays, nine of them (60%) reacted with both ppv-m specific and ppv-d specific monoclonal antibodies. partial 5' and 3' genomic sequence analysis on four isolates demonstrated that irrespe ...200919428744
direct sample preparation methods for the detection of plum pox virus by real-time rt-pcr.direct systems to process plant materials allowed high-throughput testing of plum pox virus (ppv) by real-time reverse transcription (rt)-pcr without nucleic acids purification. crude plant extracts were diluted in buffer or spotted on membranes to be used as templates. alternatively, immobilized ppv targets were amplified from fresh sections of plant tissues printed or squashed onto the same supports, without extract preparation. spot real-time rt-pcr was validated as a ppv diagnostic method in ...200919440977
multiplex pcr and multiplex rt-pcr for inclusive detection of major swine dna and rna viruses in pigs with multiple infections.multiplex pcr and multiplex rt-pcr were developed to identify nine viruses in pigs with multiple infections. these viruses are: porcine circovirus type 2 (pcv2), suid herpesvirus 1, porcine parvovirus (ppv), porcine reproductive and respiratory syndrome virus (prrsv), japanese encephalitis virus, porcine rotavirus a (porv-a), porcine epidemic diarrhea virus (pedv), transmissible gastroenteritis virus (tgev), and getah virus. these methods were shown to be high specificity and sensitivity. in the ...200919467264
individual risk factors for post-weaning multisystemic wasting syndrome (pmws) in pigs: a hierarchical bayesian survival analysis.risk factors for post-weaning multisystemic wasting syndrome (pmws) at the pig level were identified using data from a longitudinal study in seven pmws-affected farms in france. in each farm, a representative sample of 120 pigs (180 in one farm) was randomly selected after farrowing and followed from birth to slaughter. individual information included serological status for porcine circovirus type 2 (pcv-2), porcine reproductive and respiratory syndrome (prrs) virus, and porcine parvovirus (ppv) ...200919477031
prospective evaluation of liver fibrosis in chronic viral hepatitis c infection using the sabadell nihced (non-invasive hepatitis-c-related cirrhosis early detection) index.liver disease resulting from chronic hepatitis c virus (hcv) infection follows an asymptomatic course towards cirrhosis and its complications in 20-40% of cases. earlier studies demonstrated that advanced fibrosis is a prognostic factor. the "gold standard" for the evaluation of fibrosis grade is liver biopsy. our group validated a predictive index - nihced - based on demographic, laboratory parameters, and echographic data to determine the presence of cirrhosis.200919527078
vaccination against porcine parvovirus protects against disease, but does not prevent infection and virus shedding after challenge infection with a heterologous virus strain.the demonstration of field isolates of porcine parvovirus (ppv) that differ genetically and antigenically from vaccine strains of ppv raises the question of whether the broadly used inactivated vaccines can still protect sows against the novel viruses. ten specific-pathogen-free primiparous sows were assigned to three groups and were vaccinated with one of two vaccines based on the old vaccine strains, or served as non-vaccinated controls. after insemination, all sows were challenged with the pr ...200919535504
expression of porcine parvovirus vp2 gene requires codon optimized e. coli cells.porcine parvovirus (ppv) is a widespread infectious virus that causes serious reproductive diseases of swine and death of piglets. the gene coding for the capsid protein vp2 of ppv was amplified and inserted into the plasmid pet-32a (+), which was then used to transform escherichia coli rosetta, the capsid protein of ppv was fused to a polyhistidine tag, and the position of the affinity tag is in n-terminus. vp2 was expressed using different expression host bacteria, including e. coli bl21, and ...200919543964
prevalence of feline coronavirus antibodies in cats in bursa province, turkey, by an enzyme-linked immunosorbent assay.feline sera from bursa province (turkey) were assayed for coronavirus antibody using an enzyme-linked immunosorbent assay (elisa). the study was performed on 100 sera collected from cats belonging to catteries or community shelters and to households. the serum samples were initially tested with the virus neutralisation (vn) test and the results were then compared with the elisa. the vn yielded 79 negative and 21 positive sera but the elisa confirmed only 74 as negative. the elisa-negative sera w ...200919560387
[viral factors influencing histological changes of hbeag-negative chronic hepatitis b patients with persistently normal serum alt levels].to investigate the correlation between viral factors and liver histological changes of hbeag-negative chronic hepatitis b patients with persistently normal serum alt levels (pnal).200919567022
virological response at 4 weeks to predict outcome of hepatitis c treatment with pegylated interferon and ribavirin.viral kinetics during therapy provides information on how to individualize treatment. to determine the benefit of assessing positive predictive values (ppvs) and negative predictive values (npvs) of rapid virological responses (rvrs) and early virological responses (evrs), on-treatment outcomes in chronic hepatitis c patients were examined.200919578235
evaluation of a rapid immunochromatographic device for the detection of igm & igg antibodies to dengue viruses (denv) in a tertiary care hospital in south india.this study has evaluated the performance of a rapid immunochromatographic test (ict) device in detecting antibodies to dengue virus (denv) in a tertiary hospital in south india. sera from hospital attendees, with requests for denv antibody testing, were tested with the panbio dengue duo cassette and a reference antibody capture assay for the detection of igm (dengue igm capture elisa-national institute of virology, india) and igg (dengue igg capture elisa-panbio diagnostics inc., australia) anti ...200919584509
use of different inhibitory quotients to predict early virological response to tipranavir in antiretroviral-experienced human immunodeficiency virus-infected patients.information about the relationship between pharmacological parameters and an early virological response to tipranavir (tpv) is scarce. human immunodeficiency virus (hiv)-infected patients who had received tpv as part of a salvage regimen were analyzed retrospectively. a virological response was defined as a decline in the hiv rna level of > or = 1 log unit or to <50 copies/ml between weeks 4 and 12 of therapy. the virtual inhibitory quotient (viq) was calculated as the ratio of the tpv plasma tr ...200919596874
quantitative estimation of plum pox virus targets acquired and transmitted by a single myzus persicae.the viral charge acquired and inoculated by single aphids in a non-circulative transmission is estimated using plum pox virus (ppv). a combination of electrical penetration graph and taqman real-time rt-pcr techniques was used to establish the average number of ppv rna targets inoculated by an aphid in a single probe (26,750), approximately half of the acquired ones. this number of ppv targets is responsible for a systemic infection of 20% on the inoculated receptor plants. no significant differ ...200919597934
meld exceptions and new predictive score of death on long waiting lists for liver transplantation.cirrhosis related complications, considered meld exceptions, proved to add prognostic value to the meld score in predicting waiting list mortality.200919601457
predictability of sustained virological response to pegylated interferon alpha-2b plus ribavirin therapy by week-8 viral response in hiv-positive patients with chronic hepatitis c virus infection.chronic hepatitis c is frequent and aggressive in hiv-positive patients. identification of early predictors of response to anti-hcv therapy is needed for a lower rate of response and higher discontinuations, compared to hcv mono-infected subjects. the aim of our study was to evaluate the predictive value of virological response (vr) at week 4-8-12 of pegylated interferon alpha-2b (peg-ifn) plus ribavirin (rbv) on sustained virological response (svr) in hiv-hcv co-infected patients. 100 patients ...200919601782
clinical evaluation of nuclisens magnetic extraction and nuclisens analytical specific reagents for the real-time detection of respiratory syncytial virus (rsv) in paediatric respiratory specimens.to evaluate the combination of nuclisens magnetic extraction and nuclisens analytical specific reagents (biomérieux, marcy l'etoile, france) for the detection of respiratory syncytial virus (rsv) from a variety of respiratory samples.200919625288
influence of peptide ligand surface density and ethylene oxide spacer arm on the capture of porcine parvovirus.in previous work, we identified two trimeric peptide ligands (designated wrw and kyy), which bound specifically to porcine parvovirus (ppv) and demonstrated their ability to capture and remove the virus from solutions containing 7.5% human blood plasma. this article examines the influences of peptide density and the presence of an ethylene oxide spacer arm on the efficiency of virus capture using these two ligands. the wrw peptide bound the most virus from plasma solutions at the lowest peptide ...200919634175
disinfection efficacy against parvoviruses compared with reference viruses.some virus species can resist harsh environmental conditions, surviving on surfaces for long periods with the possibility of being transmitted to susceptible hosts. studies are limited on the efficacy of disinfectants against viruses dried onto surfaces, in particular, with the identification of new pathogenic non-enveloped viruses that are expected to have high resistance to disinfection, such as parvoviruses. in this study a range of commonly used biocides, including heat, was tested against p ...200919646784
[establishment of rt- lamp for rapid detection of foot-and-mouth disease virus].a rapid detection of foot-and-mouth disease virus (fmdv) was established by using reverse transcription loop-mediated isothermal amplification (rt-lamp) method, meanwhile its specificity and sensitivity were assessed. the results showed that the fmdv rna could be amplified by incubation at 65degrees c for only 1h using six primers designed based on fmdv polyprotein gene and the amplification products could be detected easily by naked-eye. there is no cross reaction with other virus such as svdv, ...200919678569
epstein-barr virus (ebv)-encoded rna: automated in-situ hybridization (ish) compared with manual ish and immunohistochemistry for detection of ebv in pediatric lymphoproliferative disorders.detection of epstein-barr virus (ebv) may be achieved by various methods, including ebv-encoded rna (eber) in-situ hybridization (ish) and immunohistochemistry (ihc) for latent membrane protein (lmp-1). we compared novel automated ish and ihc techniques in pediatric lymphoproliferative disorders with results obtained by manual ish. thirty-seven pediatric cases previously studied by manual eber ish (including 18 eber-positive, 15 eber-negative, and 4 eber-equivocal cases) were used for the study. ...200918442302
a temperature-controlled amplicon system derived from plum pox potyvirus.the control of replication can facilitate a viral amplicon to reach high expression levels by enabling the virus to escape host defence mechanisms and reducing the deleterious effects of viral infection. we have developed a novel system to regulate amplicon expression by controlling the temperature of plant growth. nicotiana benthamiana plants were transformed at two different temperatures with a cdna copy of the plum pox potyvirus genome harbouring the open reading frame 2 of porcine circovirus ...200918801011
detection of porcine parvovirus by loop-mediated isothermal amplification.loop-mediated isothermal amplification is a novel method for rapid amplification of dna. it has been adopted widely for the detection of virus because of its simplicity, rapidity, and specificity. a loop-mediated isothermal amplification assay was developed for the detection of porcine parvovirus. four primers specific for six regions of ppv non-structural protein 1 gene were designed with an online software. after amplifying at a constant temperature of 59-65 degrees c by bst enzyme, a clear re ...200918996150
real-time intraoperative detection of melanoma lymph node metastases using recombinant vaccinia virus glv-1h68 in an immunocompetent animal model.there is a clinical need for improved intraoperative detection of lymph node metastases from malignant melanoma (mm). we aimed to investigate the use of recombinant vaccinia virus glv-1h68, expressing green fluorescent protein (gfp), for real-time intraoperative detection of melanoma lymph node metastases in an immunocompetent animal model. mice bearing foot pad tumors received intratumoral injections of glv-1h68, and 48 hr later were evaluated for popliteal lymph node metastasis using noninvasi ...200919035444
characterization of a natural plum pox virus isolate bearing a truncated coat protein.plum pox virus (ppv) isolates were collected in hungary from plum varieties. pcr targeting the 3' genomic region resulted in a shorter pcr product in the case of the b1298 isolate bearing a 135-nucleotide deletion in frame in the n-terminal part of the coat protein (cp). the isolate was aphid-transmissible and the virion diameter was reduced compared to ppv-sk68. detectability of this isolate by western blot varied according to the antibody used. integration of the deleted cp gene into an infect ...200919082685
abbott realtime hepatitis c virus (hcv) and roche cobas ampliprep/cobas taqman hcv assays for prediction of sustained virological response to pegylated interferon and ribavirin in chronic hepatitis c patients.two commercial real-time pcr assays are currently available for sensitive hepatitis c virus (hcv) rna quantification: the abbott realtime hcv assay (art) and roche cobas ampliprep/cobas taqman hcv assay (cap/ctm). we assessed whether the two real-time pcr assays were more effective than roche cobas amplicor hcv monitor test, v.2.0 (cam) for prediction of the sustained virological response (svr) to pegylated interferon (peg-ifn) plus ribavirin (rbv) in chronic hepatitis c. sixty patients chronica ...200919091819
expression, purification, and characterization of recombinant ns-1, the porcine parvovirus non-structural protein.the non-structural protein ns-1 of porcine parvovirus (ppv) could be a useful antigen for differentiating pigs infected with ppv from those vaccinated with inactivated whole virus. ns-1 was expressed in escherichia coli using the pet-32a (+) vector. the fusion protein, which was expressed at a high level, was similar antigenically to the native ns-1 protein as determined by western blot assay using polyclonal antibodies from pigs vaccinated with alive ppv vaccine. a simple procedure was used to ...200919101593
early serum hbsag drop: a strong predictor of sustained virological response to pegylated interferon alfa-2a in hbeag-negative patients.pegylated interferon alfa-2a (peg-ifn) may induce sustained virological response (svr) in 20% of hepatitis b e antigen (hbeag)-negative chronic hepatitis b (chb) patients. in addition, loss of hepatitis b surface antigen (hbsag) is achieved with a 10% yearly rate after treatment cessation in sustained responders. the aim of this study was to assess on-treatment serum hbsag kinetics to predict svr in hbeag-negative patients treated with peg-ifn. forty-eight consecutive patients were treated with ...200919115222
dengue fever scoring system: new strategy for the early detection of acute dengue virus infection in taiwan.dengue fever is an important public health problem in southern taiwan. the purpose of this study was to develop a dengue scoring system using a three-stage process, which may be used as a guidance tool for the early diagnosis of dengue fever.200919933032
challenges in the use of in silico tools for predicting peptides binding to hla-class ii molecules of hcv e1, e2, and p7.the application of in silico tools for the development of t-cell vaccines is crucial. yet, due to myriad of polymorphisms of human t-lymphocytic antigen challenges, such therapeutic opportunities present unique roadblocks. there is an obvious advantage in using immunoinformatics (i.e., significantly decreasing cost related to laboratory expenses). a previous publication looked at random binding and nonbinding peptides in order to test the practicality of using such in silico tools to obtain poss ...200922430440
evaluation of the who clinical case definition of aids among children in india.the need of a clinical case definition (ccd) for acquired immunodeficiency syndrome (aids) was felt by public health agencies to monitor diseases resulting from human immunodeficiency virus (hiv) infection. to test the statistical significance of the existing world health organization (who) ccd for the diagnosis of aids in areas where diagnostic resources are limited in india, a prospective study was conducted in the paediatrics department at dr. ram manohar lohia hospital, new delhi. 360 cases ...200819127663
comparison of the liver stiffness measurement by transient elastography with the liver biopsy.to compare the liver stiffness (ls) measurement by transient elastography (te) to the liver biopsy (lb)-considered the "gold standard" in the evaluation of patients with chronic hepatitis c.200819030204
endocervical cytobrush for the detection of cervical dysplasia before large loop excision of the transformation zone (lletz).we aimed to identify the number of histologically verified cervical intraepithelial neoplasia (cin)/cervical cancer lesions detected by endocervical cytobrush (ec) which have been missed by repeat pap smear and colposcopy before large loop excision of the transformation zone (lletz).200819031969
an evaluation of saliva as an alternative to plasma for the detection of hepatitis c virus antibodies.seroepidemiological studies on the prevalence of hepatitis c virus (hcv) in india have been hampered by reluctance of subjects to provide blood samples for testing. we evaluated the use of saliva as an alternate specimen to blood for the detection of antibodies to hcv.200818974484
liver stiffness in the hepatitis b virus carrier: a non-invasive marker of liver disease influenced by the pattern of transaminases.to investigate the usefulness of transient elastography by fibroscan (fs), a rapid non-invasive technique to evaluate liver fibrosis, in the management of chronic hepatitis b virus (hbv) carriers.200818985805
impact of pneumococcal vaccination on the incidence of pneumonia by hiv infection status among patients enrolled in the veterans aging cohort 5-site study.human immunodeficiency virus (hiv)-infected persons have a high incidence of pneumonia and pneumococcal disease. benefits of vaccination with the 23-valent pneumococcal polysaccharide vaccine (ppv) among these patients continue to be debated.200818444830
the predictive value of cerebrospinal fluid epstein-barr viral load as a marker of primary central nervous system lymphoma in hiv-infected persons.the presence of epstein-barr virus (ebv) dna in cerebrospinal fluid (csf) is used as a marker of hiv-associated primary central nervous system lymphoma (pcnsl). in our setting, ebv dna is frequently detected in the csf of hiv-infected patients with miscellaneous neurological diseases and thus its presence is a poor predictor of pcnsl.200818455472
evaluation of commercial ebv recombline assay for diagnosis of nasopharyngeal carcinoma.in recent years a number of epstein-barr virus (ebv) proteins were defined as being immunodominant for either igm, igg or iga immune responses, yielding promising markers for diagnostic serology. specific reactivity patterns to these proteins have been described for infectious mononucleosis (im), nasopharyngeal carcinoma (npc), various types of lymphoma, and healthy ebv carriers.200818455473
[meta-analysis for the pooled sensitivity and specificity of hepatitis b surface antigen rapid tests].although hepatitis b surface antigen (hbsag) rapid test based on immunochromatographic assay (ica) is now widely used, the test has not been evaluated sufficiently enough to validate its performance. thus, it is important to summarize the clinical performance of the test kits. in this study, we performed meta-analysis for the performance of the hbsag rapid tests.200818458514
evaluation of the performance of four rapid tests for detection of hepatitis b surface antigen in antananarivo, madagascar.four rapid immunochromatographic assays--determine hbsag, virucheck hbsag, cypress hbsag dipstick and hexagon hbsag--for human hepatitis b surface antigen (hbsag) detection in human serum were evaluated. a collection of reference serum samples (91 hbsag positive and 109 hbsag negative) stored at -80 degrees c was used. sensitivity and positive predictive value (ppv) exceeded 95%, and specificity and negative predictive value (npv) exceeded 96% for all tests. the determine hbsag test performed be ...200818462816
identification of trimeric peptides that bind porcine parvovirus from mixtures containing human blood plasma.virus contamination in human therapeutics is of growing concern as more therapeutic products from animal or human sources come into the market. all biopharmaceutical processes are required to have at least two distinct viral clearance steps to remove viruses. most of these steps work well for enveloped viruses and large viruses, whether enveloped or not. that leaves a class of small non-enveloped viruses, like parvoviruses and hepatitis a, which are not easily removed by these typical steps. in ...200818470993
performance characteristics of a new rapid immunochromatographic test for the detection of antibodies to human immunodeficiency virus (hiv) types 1 and 2.diagnostic kits for the detection of human immunodeficiency virus (hiv) antibodies have reached an unprecedented number. but choice of an ideal, cost-effective, and rapid test for hiv infection is of immense value for use in developing countries like india, where resources are limited. in this study we have evaluated the performance characteristics of the rapid immunochromatographic hiv test kit first response hiv 1-2.o. first, the laboratory archived 450 characterized plasma/serum specimens, wh ...200818484656
monitoring of bk virus replication in the first year following renal transplantation.bk virus-associated nephropathy (bkvan) is one of the most common viral diseases affecting renal allografts. screening for viral replication may allow for earlier intervention with reduced allograft loss. a plasma viral load >10(4) copies/ml of bkv dna is recommended for a presumed diagnosis of bkvan.200818503098
alteration in the chloroplastic metabolism leads to ros accumulation in pea plants in response to plum pox virus.in this work, a recombinant plum pox virus (ppv, sharka) encoding green fluorescent protein is used to study its effect on antioxidant enzymes and protein expression at the subcellular level in pea plants (cv. alaska). ppv had produced chlorotic spots as well as necrotic spots in the oldest leaves at 13-15 d post-inoculation. at 15 d post-inoculation, ppv was present in the chlorotic and necrotic areas, as shown by the fluorescence signal produced by the presence of the green fluorescent protein ...200818535298
molecular basis for porcine parvovirus detection in dead fetuses.reproductive failures are still common grounds for complaint by commercial swine producers. porcine parvovirus (ppv) is associated with different clinical reproductive signs. the aim of the present study was to investigate ppv fetal infection at swine farms having ongoing reproductive performance problems. the presence of virus in fetal tissues was determined by nested-polymerase chain reaction assay directed to the conserved ns1 gene of ppv in aborted fetuses, mummies and stillborns. fetuses sh ...200818561384
plum pox virus variability detected by the advanced analytical methods.plum pox virus (ppv) infects stone-fruit trees with important economical impact mainly in europe and mediterranean region. the data about ppv intra-species variability accumulated markedly in the last two decades. six ppv strains have been recognized using different approaches including serology, protein analysis, specific amplification, and genome sequencing. reliable and sensitive diagnostics is the most important requirement for application of early control and safety measures. therefore, man ...200818564894
the prehistory of potyviruses: their initial radiation was during the dawn of agriculture.potyviruses are found world wide, are spread by probing aphids and cause considerable crop damage. potyvirus is one of the two largest plant virus genera and contains about 15% of all named plant virus species. when and why did the potyviruses become so numerous? here we answer the first question and discuss the other.200818575612
altered gene expression changes in arabidopsis leaf tissues and protoplasts in response to plum pox virus infection.virus infection induces the activation and suppression of global gene expression in the host. profiling gene expression changes in the host may provide insights into the molecular mechanisms that underlie host physiological and phenotypic responses to virus infection. in this study, the arabidopsis affymetrix ath1 array was used to assess global gene expression changes in arabidopsis thaliana plants infected with plum pox virus (ppv). to identify early genes in response to ppv infection, an arab ...200818613973
dry-heat treatment process for enhancing viral safety of an antihemophilic factor viii concentrate prepared from human plasma.viral safety is a prerequisite for manufacturing clinical antihemophilic factor viii concentrates from human plasma. with particular regard to the hepatitis a virus (hav), a terminal dry-heat treatment (100 degrees for 30 min) process, following lyophilization, was developed to improve the virus safety of a solvent/detergent-treated antihemophilic factor viii concentrate. the loss of factor viii activity during dry-heat treatment was of about 5%. no substantial changes were observed in the physi ...200818633304
improvement of virus safety of an antihemophilc factor ix by virus filtration process.viral safety is an important prerequisite for clinical preparations of plasma-derived pharmaceuticals. one potential way to increase the safety of therapeutic biological products is the use of a virus-retentive filter. in order to increase the viral safety of human antihemophilic factor ix, particularly in regard to non-enveloped viruses, virus removal process using a polyvinylidene fluoride membrane filter (viresolve nfp) has been optimized. the most critical factor affecting the filtration eff ...200818667862
identification of restriction endonuclease with potential ability to cleave the hsv-2 genome: inherent potential for biosynthetic versus live recombinant microbicides.herpes simplex virus types 1 and 2 are enveloped viruses with a linear dsdna genome of approximately 120-200 kb. genital infection with hsv-2 has been denoted as a major risk factor for acquisition and transmission of hiv-1. developing biomedical strategies for hsv-2 prevention is thus a central strategy in reducing global hiv-1 prevalence. this paper details the protocol for the isolation of restriction endunucleases (reases) with potent activity against the hsv-2 genome and models two biomedic ...200818687114
hepatitis vaccination in patients with hepatitis c: practice and validation of codes at a large veterans administration medical centre.hepatitis vaccination is recommended in patients with chronic liver disease.200818691350
host-specific effect of p1 exchange between two potyviruses.the potyviruses plum pox virus (ppv) and tobacco vein mottling virus (tvmv) have distinct host ranges and induce different symptoms in their common herbaceous hosts. to test the relevance of the p1 protein in host compatibility and pathogenicity, hybrid viruses were constructed in which the p1 coding sequence of ppv was completely or partially replaced by the corresponding sequences from tvmv. infections induced by these chimeric viruses revealed that the tvmv p1 and a ppv/tvmv hybrid p1 protein ...200818705848
use of luminex xmap-derived bio-plex bead-based suspension array for specific detection of ppv w and characterization of epitopes on the coat protein of the virus.a panel of monoclonal antibodies (mabs) directed against the n-terminus region of the coat protein (cp) of strain ppv w (isolate 3174) was generated by immunizing mice with recombinant peptides. the best performing mabs were identified as 2c3 and 10g7. mab 2c3 was selected for comparison of a standard tas-elisa protocol with a luminex xmap technology-derived bead-based suspension array system described as a triple antibody sandwich-microsphere immunoassay (tas-mia). tas-mia was as sensitive as t ...200818722476
consensus recommendations on immunization, 2008.justification: there is a need to formulate recommendations regarding use of new vaccines which have become recently available/will soon be available and to review/revise recommendations about existing vaccines in light of recent information.200818723905
performance of indirect immunofluorescence assay, immunochromatography assay and reverse transcription-polymerase chain reaction for detecting human respiratory syncytial virus in nasopharyngeal aspirate samples.comparison of the use of indirect immunofluorescence assay (ifa), immunochromatography assay (ica-bd) and reverse transcription-polymerase chain reaction (rt-pcr) for detecting human respiratory syncytial virus (hrsv) in 306 nasopharyngeal aspirates samples (npa) was performed in order to assess their analytical performance. by comparing the results obtained using ica-bd with those using ifa, we found relative indices of 85.0% for sensitivity and 91.2% for specificity, and the positive (ppv) and ...200818797759
[identification of porcine parvovirus and virus-specific antibodies by polymerase chain reaction and enzyme immunoassay].porcine parvovirus infection (ppvi) caused by a small non-enveloped virus (porcine parvovirus, ppv) is responsible for serious reproductive dysfunctions in sows. in the russian federation, the approved diagnostic methods for determination of parvovirus antigen and virus-specific antibodies are hemagglutination and hemagglutination-inhibition tests, respectively. the present paper gives the results of developing diagnostic tests to reveal porcine parvovirus by polymerase chain reaction and its an ...200819172907
virodynamic predictors of response to pegylated interferon and lamivudine combination treatment of hepatitis b e antigen-positive chronic hepatitis b.early identification of non-responders to interferon-alpha and development of stopping rules are needed in patients with chronic hepatitis b to reduce treatment-related costs and morbidity.200819195328
assessment of the diversity and dynamics of plum pox virus and aphid populations in transgenic european plums under mediterranean conditions.the molecular variability of plum pox virus (ppv) populations was compared in transgenic european plums (prunus domestica l.) carrying the coat protein (cp) gene of ppv and non-transgenic plums in an experimental orchard in valencia, spain. a major objective of this study was to detect recombination between ppv cp transgene transcripts and infecting ppv rna. additionally, we assessed the number and species of ppv aphid vectors that visited transgenic and non-transgenic plum trees. test trees con ...200817605085
oligonucleotide microarray-based detection and genotyping of plum pox virus.plum pox virus (ppv) is the most damaging viral pathogen of stone fruits. the detection and identification of its strains are therefore of critical importance to plant quarantine and certification programs. existing methods to screen strains of ppv suffer from significant limitations such as the simultaneous detection and genotyping of several strains of ppv in samples infected with different isolates of the virus. a genomic strategy for ppv screening based on the viral nucleotide sequence was d ...200817920703
demonstration of an association between detection of igg antibody reactivity towards the c-terminal region of the pres1 protein of hepatitis b virus and the capacity to respond to interferon therapy in chronic hepatitis b.the treatment of hepatitis b virus (hbv) remains complex, with somewhat unpredictable responses. the aim of this study was to determine the predictive value of the pretreatment presence of circulatory antibodies towards a synthetic peptide mimicking the amino acids 94-117 of the pres1 protein of hbv and the capacity to respond to alpha-inteferon (ifn-alpha) treatment.200817931371
development of a novel hot-start multiplex pcr for simultaneous detection of classical swine fever virus, african swine fever virus, porcine circovirus type 2, porcine reproductive and respiratory syndrome virus and porcine parvovirus.a novel hot-start multiplex pcr (mpcr) assay was developed and subsequently evaluated for its effectiveness in simultaneously detecting multiple viral infections of swine. specific primers for each of five virus genomes, namely classical swine fever virus (csfv), african swine fever virus (asfv), porcine circovirus type 2 (pcv2), porcine reproductive and respiratory syndrome virus (prrsv) and porcine parvovirus (ppv) were used. combined nucleic acid purification was carried out using a commercia ...200817975735
specific and efficient cleavage of fusion proteins by recombinant plum pox virus nia protease.site-specific proteases are the most popular kind of enzymes for removing the fusion tags from fused target proteins. nuclear inclusion protein a (nia) proteases obtained from the family potyviridae have become promising due to their high activities and stringencies of sequences recognition. nia proteases from tobacco etch virus (tev) and tomato vein mottling virus (tvmv) have been shown to process recombinant proteins successfully in vitro. in this report, recombinant ppv (plum pox virus) nia p ...200818024078
identification of plum pox virus pathogenicity determinants in herbaceous and woody hosts.plum pox virus (ppv) is a member of the genus potyvirus that is able to infect a large variety of plant species, including trees of the genus prunus, its natural host. when some ppv isolates are propagated for an extended time in herbaceous plants, their ability to infect trees is reduced. the molecular basis of this change in host infectivity is poorly understood. we report the construction of hybrid viruses from cdna clones of two d-strain isolates of ppv, ppv-d and ppv-r, which differ in thei ...200818052879
role of the 25-26 nt sirna in the resistance of transgenic prunus domestica graft inoculated with plum pox virus.the reaction of a genetically engineered plum clone (c5) resistant to plum pox virus (ppv) by graft inoculation with the virus was evaluated. the resistance in this clone has been demonstrated to be mediated through post-transcriptional gene silencing (ptgs). a single c5 plant out of 30 plants inoculated with ppv m strain by double chip-budding showed mild diffuse mosaic 'sharka' symptom at the bottom section of the scion. the upper leaves of this ppv-infected c5 plant remained symptomless and t ...200818071892
undetectable hepatitis c virus rna at week 4 as predictor of sustained virological response in hiv patients with chronic hepatitis c.low baseline serum hepatitis c virus (hcv)-rna and clearance of viraemia at week 4 with pegylated interferon (pegifn) plus ribavirin therapy predict sustained virological response (svr) and enable a shorter duration of therapy in patients with chronic hepatitis c. it is unclear whether this applies to hiv/hcv-co-infected patients.200818090387
recurrent hepatitis c after liver transplantation: on-treatment prediction of response to peginterferon/ribavirin therapy.sustained virologic response (svr) in the treatment of recurrent hepatitis c virus (hcv) infection after liver transplantation (lt) remains suboptimal. we evaluated efficacy of pegylated interferon alfa (peg) and ribavirin (rbv) (peg/rbv) combination therapy in lt recipients with recurrent hcv and predictive values of rapid virological response (rvr) and early virologic response (evr). between january 2001 and october 2005, lt recipients with recurrent hcv were intended to be treated for 48 week ...200818161839
performance of noninvasive markers for liver fibrosis is reduced in chronic hepatitis c with normal transaminases.in chronic hepatitis c, biopsy is the gold standard for assessment of liver fibrosis. few studies investigated noninvasive markers of liver fibrosis in hepatitis c virus (hcv) patients with normal alanine aminotrasferase (nalt). eighty hcv patients with nalt and 164 hcv patients with elevated alanine aminotrasferase (ealt) who underwent a diagnostic liver biopsy were evaluated for ast-to-platelet ratio, forns' index, ast-to-alt ratio (aar), fibrotest and the recently proposed fibroindex, using l ...200818179453
identification of quantitative trait loci controlling symptom development during viral infection in arabidopsis thaliana.in compatible interactions between plants and viruses that result in systemic infection, symptom development is a major phenotypic trait. however, host determinants governing this trait are mostly unknown, and the mechanisms underlying it are still poorly understood. in a previous study on the arabidopsis thaliana-plum pox virus (ppv) pathosystem, we showed a large degree of variation in symptom development among susceptible accessions. in particular, cvi-1 (cape verde islands) accumulates viral ...200818184064
role of rapid virological response in prediction of sustained virological response to peg-ifn plus ribavirin in hcv / hiv co-infected individuals.the objective of the study was to evaluate the role of rapid virological response (rvr) in predicting sustained virological response (svr) rates to hepatitis c virus (hcv) therapy. 65 hiv / hcv co-infected patients commenced hcv treatment per protocol. hiv / hcv patients with a mean cd4 count of 502 were treated for 24-48 weeks depending on genotype. virological response was assessed at weeks 4 (rvr), 12 [early virological response (evr)], 24, at end of treatment (eotr) and 24 weeks post-complet ...200818221297
tuberculin skin test results in hiv-infected patients in india: implications for latent tuberculosis treatment.to evaluate the utility of the tuberculin skin test (tst) in detecting latent and active tuberculosis (tb) among human immunodeficiency virus (hiv) infected patients in south india.200818230249
optimized cutoffs improve performance of the aspartate aminotransferase to platelet ratio index for predicting significant liver fibrosis in human immunodeficiency virus/hepatitis c virus co-infection.to assess the diagnostic value of modified cutoffs for aspartate aminotransferase to platelet ratio index (apri) to predict significant liver fibrosis in human immunodeficiency virus (hiv)/hepatitis c virus (hcv) patients.200818339075
optimizing screening for acute human immunodeficiency virus infection with pooled nucleic acid amplification tests.recent studies have shown the public health importance of identifying individuals with acute human immunodeficiency virus infection (ahi); however, the cost of nucleic acid amplification testing (naat) makes individual testing of at-risk individuals prohibitively expensive in many settings. pooled naat (or group testing) can improve efficiency and test performance of testing for ahi, but optimizing the pooling algorithm can be difficult. we developed simple, flexible biostatistical models of spe ...200818353930
rapid detection of porcine circovirus type 2 by loop-mediated isothermal amplification.a method of loop-mediated isothermal amplification (lamp) was employed to develop a rapid and simple detection system for porcine circovirus type 2 (pcv2). the amplification could be finished in 60 min under isothermal condition at 64 degrees c by employing a set of four primers targeting the cap gene of pcv2. the lamp assay showed higher sensitivity than the conventional pcr, with a detection limit of five copies per tube of purified pcv2 genomic dna. no cross-reactivity was observed from the s ...200818355932
phylogenetic analysis of members of the phycodnaviridae virus family, using amplified fragments of the major capsid protein gene.algal viruses are considered ecologically important by affecting host population dynamics and nutrient flow in aquatic food webs. members of the family phycodnaviridae are also interesting due to their extraordinary genome size. few algal viruses in the phycodnaviridae family have been sequenced, and those that have been have few genes in common and low gene homology. it has hence been difficult to design general pcr primers that allow further studies of their ecology and diversity. in this stud ...200818359826
development of recombinant porcine parvovirus-like particles as an antigen carrier formed by the hybrid vp2 protein carrying immunoreactive epitope of porcine circovirus type 2.virus-like particles (vlps) are non-replicative vectors for delivery of heterologous epitopes and induction of immune responses. in this study, a self-assembled porcine parvovirus (ppv) vp2 capsid protein [ppv:vlp-(pcv2)] carrying immunoreactive epitopes, residues 165-200 from the porcine circovirus 2 (pcv2) virus nucleoprotein was constructed. immunogenicity study was carried out with hybrid vlps derived from hek-293 cells infected with recombinant adenovirus vectors. to our knowledge, this stu ...200818378364
des-gamma-carboxyprothrombin, alpha-fetoprotein and afp-l3 in patients with chronic hepatitis, cirrhosis and hepatocellular carcinoma.hepatocellular carcinoma (hcc) is a common complication in patients with chronic viral hepatitis. detection of hcc at an early stage is critical for a favorable clinical outcome. the study aim was to: (i) compare the levels of des-gamma-carboxyprothrombin (dcp), alpha-fetoprotein (afp) and afp-l3 in hcc patients and in chronic viral hepatitis patients without hcc; (ii) define the level of each tumor marker with the best sensitivity and specificity for hcc diagnosis; and (iii) to correlate the le ...200818422961
use of pentapeptide-insertion scanning mutagenesis for functional mapping of the plum pox virus helper component proteinase suppressor of gene silencing.helper component proteinase (hc-pro) of plum pox virus is a multifunctional potyvirus protein that has been examined intensively. in addition to its involvement in aphid transmission, genome amplification and long-distance movement, it is also one of the better-studied plant virus suppressors of rna silencing. the first systematic analysis using pentapeptide-insertion scanning mutagenesis of the silencing suppression function of a potyvirus hc-pro is presented here. sixty-three in-frame insertio ...200717325375
development of latex turbidimetric immunoassay for rapid and sensitive detection of influenza virus.for the rapid and sensitive detection of influenza a and b viruses, a latex turbidimetric immunoassay (ltia) was developed using latex reagents prepared by the sensitization of anti-influenza a or b monoclonal antibodies on latex particles. we measured the immunoreactivity of these latex reagents to influenza a and b viral antigens. the sensitivity and specificity of ltia and reverse transcription-polymerase chain reaction (rt-pcr) for the detection of these viruses in clinical specimens (96 nas ...200718154440
identification of liver fibrosis in hiv/hcv-coinfected patients using a simple predictive model based on routine laboratory data.we constructed noninvasive models to predict significant fibrosis (f > or = 2) and advanced fibrosis (f > or = 3) among human immunodeficiency virus (hiv)/hepatitis c virus (hcv)-coinfected patients, naïve for anti-hcv treatment. a total of 296 patients with liver biopsy were randomly assigned to an estimation group (eg = 226; 70%) and a validation group (vg = 70; 30%). we developed the hospital gregorio marañón (hgm)-1 index, based on platelet count, aspartate aminotransferase (ast) and glucose ...200718070289
no recombination detected in artificial potyvirus mixed infections and between potyvirus derived transgenes and heterologous challenging potyviruses.risk-assessment studies of virus-resistant transgenic plants (vrtps) focussing on recombination of a plant virus with a transgenic sequence of a different virus should include a comparison of recombination frequencies between viruses in double-infected non-transgenic plants with those observed in singly infected transgenic plants to estimate recombination incidence in vrtps. in this study, the occurrence of recombination events was investigated in non-transgenic plants double-infected with two d ...200718001687
[co-expression of csfv t cell epitope e290 peptide and ppv vp2 protein in lactobacillus casei and determination of specific antibodies in immunized mice].lactobacillus casei strain 393 was selected as an antigen delivery vehicle for the development of oral vaccine to express recombinant classical swine fever virus (csfv) t cell epitope e290 peptide and porcine parvovirus (ppv) vp2 protein. the recombinant genes encoding csfv t cell epitope e290 peptide and ppv vp2 protein, respectively, were cloned into the secretion expression vector ppg, and then the ppg-vp2-e290 was electrotransformed into l. casei 393 giving rise to recombinant strain ppg-vp2 ...200717944369
isothermal amplification coupled with rapid flow-through hybridisation for sensitive diagnosis of plum pox virus.a nucleic acid sequence-based amplification method coupled with rapid flow-through hybridisation (nasba-fh) was developed for diagnosis of plum pox virus (ppv). the sensitivity level achieved by nasba-fh was 10 times higher than that obtained by co-pcr and 1000 times higher than the sensitivity afforded by rt-pcr. in addition, samples from 262 stone-fruit trees collected during winter and spring seasons were analysed. these samples were tested using methods recommended by the european and medite ...200717092572
study of the virulence and cross-neutralization capability of recent porcine parvovirus field isolates and vaccine viruses in experimentally infected pregnant gilts.the pathogenicity of two recent german field isolates of porcine parvovirus (ppv-27a and ppv-143a) and two vaccine viruses [ppv-nadl-2 and ppv-idt (msv)], which are used for the production of inactivated vaccines, was investigated by inoculation of pregnant sows at day 40 of gestation. post-infection sera of these sows as well as antisera prepared in rabbits by immunization with the four above-mentioned ppv isolates and with the virulent strain ppv-challenge (engl.) were tested for their homolog ...200717251558
immunohistochemical detection of p16ink4a in liquid-based cytology specimens on cell block sections.colposcopy biopsy procedure is a standard recommendation for atypical squamous cell cannot exclude high-grade lesion (asc-h) in abnormal papanicolaou smears. p16 (p16ink4a), a cell cycle regulator, has been shown to be overexpressed in squamous dysplasia. to further improve the diagnostic accuracy of the asc-h papanicolaou smear and to reduce unnecessary procedures, the authors evaluated the utility of immunodetection of p16 in liquid-based cytology specimens on cell blocks.200717330305
comparison of the "prodect bcs rv chip" assay with the combination of shell vial cell culture and immunofluorescence antibody test for the detection of respiratory viruses.in the present study, a multiplex reverse transcriptase polymerase chain reaction combined with a chip hybridization assay (prodect bcs rv chip) was evaluated as an alternative to the combination of immunofluorescent antibody test and shell vial cell culture considered as gold standard for the detection of respiratory viruses. among 100 specimens, 40 were positive using the combination of immunofluorescent antibody test and shell vial cell culture assay in which 9 of them were infected by two di ...200717433455
seroprevalence of varicella antibodies among pregnant women in lyon-france.the purpose of the study was to calculate the seroprevalence of immunity to the varicella-zoster virus (vzv) infection and to evaluate the positive predictive value (ppv) and the negative predictive value (npv) of the self-reported history of vzv infection in pregnant women. a cross sectional study was conducted in 18 private medical analysis laboratories. information on socio-demographic characteristics and past history of varicella or zoster were collected using a questionnaire. blood samples ...200717534728
simultaneous detection of three porcine viruses by multiplex pcr.specific oligonucleotide primers were selected and combined in a multiplex arrangement, in order to detect simultaneously three economically important porcine viruses by polymerase chain reaction (pcr). the pathogen panel was comprised of viruses that cause reproductive failure in infected herds: aujeszky's disease virus (adv), porcine parvovirus (ppv) and porcine respiratory and reproductive syndrome virus (prrsv). in order to reduce the time required for the detection of the pathogens, the ass ...200717555292
efficient priming against classical swine fever with a safe glycoprotein e2 expressing orf virus recombinant (orfv vrv-e2).an increasing demand in livestock animal husbandry for intervention or emergency vaccination strategies requires a rapid onset of protection linked to prevention of infectious agent spread. using the new recombinant parapoxvirus (ppv) orf virus (orfv) as a vaccine expressing the csfv e2 glycoprotein we demonstrate that a single intra-muscular application confers solid protection. in the prime only concept, multi-site application of the vector vaccine turned out to be superior to single-site appl ...200717600594
evaluation of hepatic steatosis by ultrasound in patients with chronic hepatitis c virus infection.to compare two alternative ultrasound parameters, hepatic vein flow (hvf) pattern and presence of focal hypoechoic areas (fha) within the liver hilus, as non-invasive predictors of liver steatosis in patients with chronic hepatitis c virus (hcv) infection.200717617117
clinical utility of afp-l3% measurement in north american patients with hcv-related cirrhosis.lens culinaris agglutinin-reactive fraction of alpha-fetoprotein (afp-l3%) has been reported to be useful in the early detection of hepatocellular carcinoma (hcc) in japan. the aim of this prospective study was to compare the clinical utility of afp-l3% with that of total afp in north american patients.200717617202
a recombinant pseudorabies virus co-expressing capsid proteins precursor p1-2a of fmdv and vp2 protein of porcine parvovirus: a trivalent vaccine candidate.pseudorabies (pr), foot-and-mouth disease (fmd), and porcine parvovirus disease are three important infectious diseases in swine worldwide. the gene-deleted pseudorabies virus (prv) has been used as a live-viral vector to develop multivalent genetic engineering vaccine. in this study, a recombinant prv, which could co-express protein precursor p1-2a of fmdv and vp2 protein of ppv, was constructed using prv tk(-)/ge(-)/lacz(+) mutant as the vector. after homologous recombination and plaque purifi ...200717628752
simple blood tests as noninvasive markers of liver fibrosis in hemodialysis patients with chronic hepatitis c virus infection.hcv infection is common among patients with end-stage renal disease (esrd) on hemodialysis, and it has been considered an independent risk factor for mortality in this setting. although liver biopsy in esrd patients with hcv infection is useful before kidney transplantation, it carries a high risk of complications. we sought to assess the diagnostic value of noninvasive markers to stage liver fibrosis in 203 esrd hcv-infected patients. univariate and multivariate analysis were used to identify v ...200717634962
no influence of collagenous proteins of achilles tendon, skin and cartilage on the virus-inactivating efficacy of peracetic acid-ethanol.the risk of transmitting human pathogenic viruses via allogeneic musculoskeletal tissue transplants is a problem requiring effective inactivation procedures. virus safety of bone transplants was achieved using peracetic acid (paa)-ethanol sterilisation. proteins are known to have an adverse effect on the virus-inactivating capacity of paa. therefore we investigated virus inactivation by paa in collagenous tissues. achilles tendon, skin and cartilage were cut into small pieces, lyophilised and co ...200717644408
[efficacy of absorbance ratio of elisa antibodies [corrected] for hepatitis c virus of 3th generation in the prediction of viremia evaluated by pcr].in order to decrease the burden of suffering and the costs derived from confirmatory molecular assays, a better strategy is badly needed to decrease the rate of false positive results of the enzyme-linked immunoassay (elisa) for detection of hepatitis c virus (hcv) antibodies (anti).200717685198
comparative expression profiling of nicotiana benthamiana leaves systemically infected with three fruit tree viruses.plant viruses cause a wide array of disease symptoms and cytopathic effects. although some of these changes are virus specific, many appear to be common even among diverse viruses. currently, little is known about the underlying molecular determinants. to identify gene expression changes that are concomitant with virus symptoms, we performed comparative expression profiling experiments on nicotiana benthamiana leaves infected with one of three different fruit tree viruses that produce distinct s ...200717722703
effectiveness of polysaccharide pneumococcal vaccine in hiv-infected patients: a case-control study.polysaccharide pneumococcal vaccine (ppv) is recommended among human immunodeficiency virus (hiv)-infected patients, although its effect in reducing the incidence of pneumonia or invasive pneumococcal disease is not well established. our objective was to determine the effectiveness of 23-valent ppv in hiv-infected adults and the risk factors for pneumococcal pneumonia or invasive pneumococcal disease.200717806042
role of myzus persicae (hemiptera: aphididae) and its secondary hosts in plum pox virus propagation.plum pox virus (family potyviridae, genus potyvirus, ppv) is one of the most important viral pathogens of plants in the genus prunus, particularly prunus persica l. the role of the myzus persicae (sulzer) (hemiptera: aphididae) as a vector of ppv-m, and its role in spreading ppv-m, was investigated. ppv-m-infected peach trees were used as inoculum sources, and transmission to 15 herbaceous species commonly present in and around peach orchards was evaluated. the presence of ppv-m in secondary hos ...200717849850
adaptation of plum pox virus to a herbaceous host (pisum sativum) following serial passages.plum pox virus (ppv) populations from peaches are able to adapt consistently to herbaceous hosts, characterized by a reduction in time to symptom development, increases in inoculation efficiency and increased titres. ppv adaptation was studied by using pea (pisum sativum) as an alternative host. two isolates of ppv from peaches were inoculated and passaged in peas ten times using either aphid or mechanical inoculation, generating four independent passage lines. mechanical-transmission efficiency ...200717872538
a chimeric plum pox virus shows reduced spread and cannot compete with its parental wild-type viruses in a mixed infection.the effect of a recombination event in the genomic 3' end on the biological properties and competitiveness of plum pox virus (ppv) was investigated. therefore, a fragment spanning the coat protein (cp) coding region and a part of the 3' non-translated region of a non-aphid-transmissible strain of ppv (ppv-nat) was replaced by the corresponding region of a ppv sour cherry isolate (ppv-soc). the resulting chimera (ppv-nat/soc) caused severe symptoms in nicotiana benthamiana, resembling those of pp ...200717872539
Displaying items 401 - 500 of 912