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detection of campylobacter in stool and determination of significance by culture, enzyme immunoassay, and pcr in developing countries.campylobacter is a common bacterial enteropathogen that can be detected in stool by culture, enzyme immunoassay (eia), or pcr. we compared culture for c. jejuni/c. coli, eia (prospect), and duplex pcr to distinguish campylobacter jejuni/c. coli and non-jejuni/coli campylobacter on 432 diarrheal and matched control stool samples from infants in a multisite longitudinal study of enteric infections in tanzania, bangladesh, and peru. the sensitivity and specificity of culture were 8.5% and 97.6%, re ...201424452175
comparison of the bd max enteric bacterial panel to routine culture methods for detection of campylobacter, enterohemorrhagic escherichia coli (o157), salmonella, and shigella isolates in preserved stool specimens.we compared the bd max enteric bacterial panel (ebp) to culture for the detection of salmonella, shigella, campylobacter, and shiga toxin-producing enterohemorrhagic escherichia coli (ehec) o157 in seeded stool samples. the ebp panel demonstrated superior sensitivity and reliably detected salmonella, ehec o157, shigella, and campylobacter at concentrations 1- to 2-log10 lower than those needed for culture detection.201424430460
evaluation of a loop-mediated isothermal amplification suite for the rapid, reliable, and robust detection of shiga toxin-producing escherichia coli in produce.shiga toxin-producing escherichia coli (stec) strains are a leading cause of produce-associated outbreaks in the united states. rapid, reliable, and robust detection methods are needed to better ensure produce safety. we recently developed a loop-mediated isothermal amplification (lamp) suite for stec detection. in this study, the stec lamp suite was comprehensively evaluated against real-time quantitative pcr (qpcr) using a large panel of bacterial strains (n = 156) and various produce items (s ...201424509927
distribution of indigenous bacterial pathogens and potential pathogens associated with roof-harvested rainwater.the harvesting of rainwater is gaining acceptance among many governmental authorities in countries such as australia, germany, and south africa, among others. however, conflicting reports on the microbial quality of harvested rainwater have been published. to monitor the presence of potential pathogenic bacteria during high-rainfall periods, rainwater from 29 rainwater tanks was sampled on four occasions (during june and august 2012) in a sustainable housing project in kleinmond, south africa. t ...201424487540
comparative analysis and limitations of ethidium monoazide and propidium monoazide treatments for the differentiation of viable and nonviable campylobacter cells.the lack of differentiation between viable and nonviable bacterial cells limits the implementation of pcr-based methods for routine diagnostic approaches. recently, the combination of a quantitative real-time pcr (qpcr) and ethidium monoazide (ema) or propidium monoazide (pma) pretreatment has been described to circumvent this disadvantage. in regard to the suitability of this approach for campylobacter spp., conflicting results have been reported. thus, we compared the suitabilities of ema and ...201424487529
molecular testing for clinical diagnosis and epidemiological investigations of intestinal parasitic infections.over the past few decades, nucleic acid-based methods have been developed for the diagnosis of intestinal parasitic infections. advantages of nucleic acid-based methods are numerous; typically, these include increased sensitivity and specificity and simpler standardization of diagnostic procedures. dna samples can also be stored and used for genetic characterization and molecular typing, providing a valuable tool for surveys and surveillance studies. a variety of technologies have been applied, ...201424696439
[bacterial biofilms: their importance in animal health and public health].bacterial biofilms are structured communities of bacterial cells enclosed in a self-produced polymer matrix that is attached to a surface. biofilms protect and allow bacteria to survive and thrive in hostile environments. bacteria within biofilms can withstand host immune responses, and are much less susceptible to antibiotics and disinfectants when compared to their planktonic counterparts. the ability to form biofilms is now considered an attribute of many microorganisms. diseases associated w ...201424688172
metabolomic profiling and antioxidant activity of some acacia species.metabolomic profiling of different parts (leaves, flowers and pods) of acacia species (acacia nilotica, acacia seyal and acacia laeta) was evaluated. the multivariate data analyses such as principal component analysis (pca) and partial least square-discriminant analysis (pls-da) were used to differentiate the distribution of plant metabolites among different species or different organs of the same species. a. nilotica was characterized with a high content of saponins and a. seyal was characteriz ...201425313274
perspectives in the use of tannins as alternative to antimicrobial growth promoter factors in poultry.antibiotics have been included in the formulation of feed for livestock production for more than 40 years as a strategy to improve feed conversion rates and to reduce costs. the use of antimicrobials as growth-promoting factors (agp) in sub-therapeutic doses for long periods is particularly favorable for the selection of antimicrobial resistant microorganisms. in the last years, global concern about development of antimicrobial resistance and transference of resistance genes from animal to human ...201424723916
a reference pan-genome approach to comparative bacterial genomics: identification of novel epidemiological markers in pathogenic campylobacter.the increasing availability of hundreds of whole bacterial genomes provides opportunities for enhanced understanding of the genes and alleles responsible for clinically important phenotypes and how they evolved. however, it is a significant challenge to develop easy-to-use and scalable methods for characterizing these large and complex data and relating it to disease epidemiology. existing approaches typically focus on either homologous sequence variation in genes that are shared by all isolates ...201424676150
alternative bacteriophage life cycles: the carrier state of campylobacter jejuni.members of the genus campylobacter are frequently responsible for human enteric disease, often through consumption of contaminated poultry products. bacteriophages are viruses that have the potential to control pathogenic bacteria, but understanding their complex life cycles is key to their successful exploitation. treatment of campylobacter jejuni biofilms with bacteriophages led to the discovery that phages had established a relationship with their hosts typical of the carrier state life cycle ...201424671947
isolation of a campylobacter lanienae-like bacterium from laboratory chinchillas (chinchilla laniger).routine necropsies of 27 asymptomatic juvenile chinchillas revealed a high prevalence of gastric ulcers with microscopic lymphoplasmacytic gastroenteritis and typhlocolitis. polymerase chain reaction (pcr) analysis using campylobacter genus-specific partial 16s rrna primers revealed the presence of campylobacter spp. dna in the faeces of 12 of 27 animals (44.4%). species-specific partial 16s rrna pcr and sequencing confirmed that these animals were colonized with campylobacter lanienae, a gram-n ...201424628887
draft genome sequence of campylobacter coli strain ipsid-1 isolated from a patient with immunoproliferative small intestinal disease.the genome sequence and annotation of campylobacter coli strain ipsid-1 are reported here. this bacterial isolate is the first to be cultured from a patient with immunoproliferative small intestinal disease (ipsid). the draft genome sequence is 1.683 mb long, comprises 64 contigs, and has 31.26% g+c content.201424625865
a multiplex pcr/ldr assay for simultaneous detection and identification of the niaid category b bacterial food and water-borne pathogens.enteric pathogens that cause gastroenteritis remain a major global health concern. the goal of this study was to develop a multiplex pcr/ligation detection reaction (ldr) assay for the detection of all niaid category b bacterial food and water-borne pathogens directly from stool specimens. to validate the pcr/ldr assay, clinical isolates of campylobacter spp., vibrio spp., shigella spp., salmonella spp., listeria monocytogenes, yersinia enterocolitica, and diarrheagenic escherichia coli were tes ...201424709368
prevalence of virulence genes in strains of campylobacter jejuni isolated from human, bovine and broiler.campylobacter jejuni isolates of different origins (bovine, broiler meat, human) were screened by polymerase chain reaction for the presence of 4 genes cdtb, cst-ii, ggt, and virb11, previously linked to virulence such as adherence, invasion, colonization, molecular mimicry, and cytotoxin production. in addition, the isolates were screened for the presence of the global gene regulator csra linked to oxidative stress responses, biofilms formation, and cell adhesion. all the c. jejuni isolates wer ...201424688515
prevalence and pathogenic potential of campylobacter isolates from free-living, human-commensal american crows.recent studies have suggested a potential role for wild birds in zoonotic transmission of campylobacter jejuni, the leading cause of gastroenteritis in humans worldwide. in this study, we detected campylobacter spp. in 66.9% (85/127) of free-ranging american crows (corvus brachyrhyncos) sampled in the sacramento valley of california in 2012 and 2013. biochemical testing and sequence analysis of 16s rrna revealed that 93% of isolates (n = 70) were c. jejuni, with cytolethal distending toxin (cdt) ...201424375131
divergent distribution of the sensor kinase coss in non-thermotolerant campylobacter species and its functional incompatibility with the response regulator cosr of campylobacter jejuni.two-component signal transduction systems are commonly composed of a sensor histidine kinase and a cognate response regulator, modulating gene expression in response to environmental changes through a phosphorylation-dependent process. cosr is an ompr-type response regulator essential for the viability of campylobacter jejuni, a major foodborne pathogenic species causing human gastroenteritis. although cosr is a response regulator, its cognate sensor kinase has not been identified in c. jejuni. ...201424587027
antimicrobial resistance of bacterial enteropathogens isolated from stools in madagascar.diarrheal diseases are a major public health problem in developing countries, and are one of the main causes of hospital admissions in madagascar. the pasteur institute of madagascar undertook a study to determine the prevalence and the pathogenicity of bacterial, viral and protozoal enteropathogens in diarrheal and non-diarrheal stools of children aged less than 5 years in madagascar. we present here the results of the analysis of antimicrobial susceptibility of the bacteria isolated during thi ...201424568189
comparative genomics of unintrogressed campylobacter coli clades 2 and 3.campylobacter jejuni and c. coli share a multitude of risk factors associated with human gastrointestinal disease, yet their phylogeny differs significantly. c. jejuni is scattered into several lineages, with no apparent linkage, whereas c. coli clusters into three distinct phylogenetic groups (clades) of which clade 1 has shown extensive genome-wide introgression with c. jejuni, yet the other two clades (2 and 3) have less than 2% of c. jejuni ancestry. we characterized a c. coli strain (76339) ...201424524824
a severe case of persistent diarrhoea associated with arcobacter cryaerophilus but attributed to campylobacter sp. and a review of the clinical incidence of arcobacter spp.although rarely, arcobacter spp. have been associated with diarrhoea and bacteraemia. we report a persistent case in a healthy 26-year-old spanish male of bloody diarrhoea, which was attributed to campylobacter but in fact was caused by arcobacter cryaerophilus, as determined by sequencing of the rpob gene. the isolate was re-identified by matrix-assisted laser desorption ionization time of flight (maldi-tof) and genotyped for five putative virulence genes and for seven genes included in the arc ...201425356338
mortality in captive baboons (papio spp.): a-23-year study.we report the causes of mortality for 4350 captive baboons that died or were euthanized due to natural causes during a 23 year period at the southwest national primate research center.201424483852
comparison of conventional pcr, multiplex pcr, and loop-mediated isothermal amplification assays for rapid detection of arcobacter species.this study aimed to develop a loop-mediated isothermal amplification (lamp) method for the rapid detection of arcobacter species. specific primers targeting the 23s ribosomal rna gene were used to detect arcobacter butzleri, arcobacter cryaerophilus, and arcobacter skirrowii. the specificity of the lamp primer set was assessed using dna samples from a panel of arcobacter and campylobacter species, and the sensitivity was determined using serial dilutions of arcobacter species cultures. lamp show ...201424478488
intersubspecific recombination in xylella fastidiosa strains native to the united states: infection of novel hosts associated with an unsuccessful invasion.the bacterial pathogen xylella fastidiosa infects xylem and causes disease in many plant species in the americas. different subspecies of this bacterium and different genotypes within subspecies infect different plant hosts, but the genetics of host adaptation are unknown. here we examined the hypothesis that the introduction of novel genetic variation via intersubspecific homologous recombination (ihr) facilitates host shifts. we investigated ihr in 33 x. fastidiosa subsp. multiplex isolates pr ...201424296499
biological roles of the o-methyl phosphoramidate capsule modification in campylobacter jejuni.campylobacter jejuni is a major cause of bacterial gastroenteritis worldwide, and the capsular polysaccharide (cps) of this organism is required for persistence and disease. c. jejuni produces over 47 different capsular structures, including a unique o-methyl phosphoramidate (meopn) modification present on most c. jejuni isolates. although the meopn structure is rare in nature it has structural similarity to some synthetic pesticides. in this study, we have demonstrated, by whole genome comparis ...201424498018
presence and analysis of plasmids in human and animal associated arcobacter species.in this study, we report the screening of four arcobacter species for the presence of small and large plasmids. plasmids were present in 9.9% of the 273 examined strains. one arcobacter cryaerophilus and four arcobacter butzleri plasmids were selected for further sequencing. the size of three small plasmids isolated from a. butzleri and the one from a. cryaerophilus strains ranged between 4.8 and 5.1 kb, and the size of the large plasmid, isolated from a. butzleri, was 27.4 kbp. the g+c content ...201424465575
detection of cdt toxin genes in campylobacter spp. strains isolated from broiler carcasses and vegetables in são paulo, brazil.campylobacteriosis is a worldwide distributed zoonosis. one of the main virulence factors related to campylobacter spp. in animals and humans is the cytolethal distending toxin (cdt), encoded by three adjacent genes (cdta, cdtb, cdtc). the occurrence of campylobacter spp. in samples of vegetables has not been reported in brazil yet, and has seldom been described in the international literature. the detection of cdt in these strains has not been reported, either. the objectives of the present stu ...201424516435
isolation and antimicrobial susceptibility patterns of campylobacter species among diarrheic children at jimma, ethiopia.introduction. campylobacter is one of the leading bacterial causes of food-borne disease. the prevalence of campylobacter species resistant to antimicrobial agents is increasing. this study is intended to determine prevalence and antimicrobial susceptibility patterns of campylobacter species among under-five children with diarrhea. methodology. a cross-sectional study was conducted among 227 under-five children with diarrhea from july to october 2012 at jimma town. isolation and identification o ...201426904735
the renaissance of bacillosamine and its derivatives: pathway characterization and implications in pathogenicity.prokaryote-specific sugars, including n,n'-diacetylbacillosamine (dinacbac) and pseudaminic acid, have experienced a renaissance in the past decade because of their discovery in glycans related to microbial pathogenicity. dinacbac is found at the reducing end of oligosaccharides of n- and o-linked bacterial protein glycosylation pathways of gram-negative pathogens, including campylobacter jejuni and neisseria gonorrhoeae. further derivatization of dinacbac results in the nonulosonic acid known a ...201424383882
comparison of characteristics of patients infected by campylobacter jejuni, campylobacter coli, and campylobacter fetus.a large database of campylobacter isolates precisely identified at the species level was used to compare patients' characteristics. in a multivariate analysis, campylobacter coli was found more often in older patients and in patients having traveled abroad and less often in summertime than campylobacter jejuni. campylobacter fetus infection occurred in much older patients and in hospitalized patients with a systemic disease.201424197884
lipooligosaccharide locus class of campylobacter jejuni: sialylation is not needed for invasive infection.campylobacter jejuni is a highly diverse enteropathogen that is commonly detected worldwide. it can sometimes cause bacteraemia, but the bacterial characteristics facilitating bloodstream infection are not known. a total of 73 c. jejuni isolates, consecutively collected from blood-borne infections during a 10-year period all over finland and for which detailed clinical information of the patients were available, were included. we screened the isolates by pcr for the lipooligosaccharide (los) loc ...201424102802
target optimization for peptide nucleic acid (pna)-mediated antisense inhibition of the cmeabc multidrug efflux pump in campylobacter jejuni.cmeabc is a resistance-nodulation-cell division (rnd)-type multidrug efflux pump conferring resistance to clinically important antibiotics in campylobacter. this study aimed to identify the optimal target sites for the inhibition of cmeabc with antisense peptide nucleic acid (pna).201424084637
an epidemiological investigation of campylobacter in pig and poultry farms in the mekong delta of vietnam.campylobacter are zoonotic pathogens commonly associated with gastroenteritis. to assess the relevance of campylobacter in vietnam, an economically transitioning country in se asia, we conducted a survey of 343 pig and poultry farms in the mekong delta, a region characterized by mixed species farming with limited biosecurity. the animal-level prevalence of campylobacter was 31·9%, 23·9% and 53·7% for chickens, ducks and pigs, respectively. c. jejuni was predominant in all three host species, wit ...201424067502
identification and characterization of an invasion antigen b gene from the oral pathogen campylobacter rectus.the oral bacterium, campylobacter rectus, is an etiological agent of periodontitis. the virulence genes of c. rectus are largely unknown. the aim of this study was to query c. rectus for the presence of an invasion antigen b (ciab) gene, which is needed for cell invasion by the related species campylobacter jejuni. pcr and pcr-walking identified a ciab from c. rectus. in silico analyses of c. rectus 314 ciab (cr-ciab) revealed an orf of 1,830 base pairs. the cr-ciab protein shared significant se ...201424426164
evaluation of the immunogenicity of campylobacter jejuni cjaa protein delivered by salmonella enterica sv. typhimurium strain with regulated delayed attenuation in chickens.campylobacter spp. are regarded as the most common bacterial cause of gastroenteritis worldwide, and consumption of chicken meat contaminated by campylobacter is considered to be one of the most frequent sources of human infection in developed countries. here we evaluated the immunogenicity and protective efficacy of salmonella typhimurium χ9718 producing the campylobacter jejuni cjaa protein as a chicken anti-campylobacter vaccine. in this study chickens were orally immunized with a new generat ...201323913025
occurrence and characteristics of fastidious campylobacteraceae species in porcine samples.this study investigated the prevalence and characteristics of campylobacteraceae including a range of fastidious species in porcine samples. over a thirteen month period caecal contents (n=402) and pork carcass swabs (n=401) were collected from three pork abattoirs and pork products (n=399) were purchased at point of sale in the republic of ireland. campylobacteraceae isolates were recovered by enrichment, membrane filtration and incubation in antibiotic free media under a modified atmosphere (3 ...201323474652
assessment of the prevalence and diversity of emergent campylobacteria in human stool samples using a combination of traditional and molecular methods.this study aims to assess the diversity of campylobacteria (campylobacter and arcobacter) in human fecal samples from patients with diarrhea (n = 140) and asymptomatic controls (n = 116) in chile, using a combination of traditional culture and molecular methods. the culture methods detected campylobacteria in 10.7% of the patients with diarrhea and in 1.7% of the controls. in contrast, the molecular methods detected campylobacteria more often than the traditional culture, with a prevalence of 25 ...201323375869
complete genome sequence of the campylobacter coli clinical isolate 15-537360.campylobacter coli strain 15-537360 was originally isolated in 2001 from a 42-year-old patient with gastroenteritis. here, we report its complete genome sequence, which comprises a 1.7-mbp chromosome and a 29-kbp conjugative cryptic plasmid. this is the first complete genome sequence of a clinical isolate of c. coli.201324336384
clinical evaluation of a real-time pcr assay for identification of salmonella, shigella, campylobacter (campylobacter jejuni and c. coli), and shiga toxin-producing escherichia coli isolates in stool specimens.enteric illness affects millions of individuals annually in the united states and results in >50,000 hospitalizations. the rapid and accurate identification of bacterial pathogens associated with gastroenteritis can aid acute patient management decisions, including the use of antibiotic therapy and infection control. this study compared the progastro sscs multiplex real-time pcr assay (gen-probe prodesse, san diego, ca) to culture for the identification of campylobacter spp. (campylobacter jejun ...201324048539
foodborne campylobacter: infections, metabolism, pathogenesis and reservoirs.campylobacter species are a leading cause of bacterial-derived foodborne illnesses worldwide. the emergence of this bacterial group as a significant causative agent of human disease and their propensity to carry antibiotic resistance elements that allows them to resist antibacterial therapy make them a serious public health threat. campylobacter jejuni and campylobacter coli are considered to be the most important enteropathogens of this genus and their ability to colonize and survive in a wide ...201324287853
source attribution of human campylobacter isolates by mlst and fla-typing and association of genotypes with quinolone resistance.campylobacteriosis is the most frequent zoonosis in developed countries and various domestic animals can function as reservoir for the main pathogens campylobacter jejuni and campylobacter coli. in the present study we compared population structures of 730 c. jejuni and c. coli from human cases, 610 chicken, 159 dog, 360 pig and 23 cattle isolates collected between 2001 and 2012 in switzerland. all isolates had been typed with multi locus sequence typing (mlst) and flab-typing and their genotypi ...201324244747
increased incidence of campylobacter spp. infection and high rates among children, israel.during 1999-2010, the annual incidence of campylobacter spp. infection in israel increased from 31.04 to 90.99 cases/100,000 population, a yearly increase of 10.24%. children <2 years of age were disproportionally affected; incidence in this age group (356.12 cases/100,000 population) was >26-fold higher than for the 30-<50 age group.201324188185
whole-genome sequencing of gentamicin-resistant campylobacter coli isolated from u.s. retail meats reveals novel plasmid-mediated aminoglycoside resistance genes.aminoglycoside resistance in campylobacter has been routinely monitored in the united states in clinical isolates since 1996 and in retail meats since 2002. gentamicin resistance first appeared in a single human isolate of campylobacter coli in 2000 and in a single chicken meat isolate in 2007, after which it increased rapidly to account for 11.3% of human isolates and 12.5% of retail isolates in 2010. pulsed-field gel electrophoresis analysis indicated that gentamicin-resistant c. coli isolates ...201323959310
multilocus sequence typing (and phylogenetic analysis) of campylobacter jejuni and campylobacter coli strains isolated from clinical cases in greece.the molecular epidemiology of c. jejuni and c. coli clinical strains isolated from children with gastroenteritis, was investigated using the multilocus sequence typing method (mlst). this analysis establishes for the first time in greece and constitutes an important tool for the epidemiological surveillance and control of campylobacter infection in our country.201324010733
arsenic resistance and prevalence of arsenic resistance genes in campylobacter jejuni and campylobacter coli isolated from retail meats.studies that investigate arsenic resistance in the foodborne bacterium campylobacter are limited. a total of 552 campylobacter isolates (281 campylobacter jejuni and 271 campylobacter coli) isolated from retail meat samples were subjected to arsenic resistance profiling using the following arsenic compounds: arsanilic acid (4-2,048 μg/ml), roxarsone (4-2048 μg/ml), arsenate (16-8,192 μg/ml) and arsenite (4-2,048 μg/ml). a total of 223 of these isolates (114 campylobacter jejuni and 109 campyloba ...201323965921
real-time genomic epidemiological evaluation of human campylobacter isolates by use of whole-genome multilocus sequence typing.sequence-based typing is essential for understanding the epidemiology of campylobacter infections, a major worldwide cause of bacterial gastroenteritis. we demonstrate the practical and rapid exploitation of whole-genome sequencing to provide routine definitive characterization of campylobacter jejuni and campylobacter coli for clinical and public health purposes. short-read data from 384 campylobacter clinical isolates collected over 4 months in oxford, united kingdom, were assembled de novo. c ...201323698529
bacteriophage receptor binding protein based assays for the simultaneous detection of campylobacter jejuni and campylobacter coli.campylobacter jejuni and campylobacter coli are the most common bacterial causes of foodborne gastroenteritis which is occasionally followed by a debilitating neuropathy known as guillain-barré syndrome. rapid and specific detection of these pathogens is very important for effective control and quick treatment of infection. most of the diagnostics available for these organisms are time consuming and require technical expertise with expensive instruments and reagents to perform. bacteriophages bi ...201323874996
antimicrobial resistance mechanisms among campylobacter.campylobacter jejuni and campylobacter coli are recognized as the most common causative agents of bacterial gastroenteritis in the world. humans most often become infected by ingesting contaminated food, especially undercooked chicken, but also other sources of bacteria have been described. campylobacteriosis is normally a self-limiting disease. antimicrobial treatment is needed only in patients with more severe disease and in those who are immunologically compromised. the most common antimicrob ...201323865047
comparison of genotypes and antibiotic resistances of campylobacter jejuni and campylobacter coli on chicken retail meat and at slaughter.multilocus sequence typing (mlst) and antibiotic resistance patterns of campylobacter jejuni and campylobacter coli from retail chicken meat showed high overlap with isolates collected at slaughterhouses, indicating little selection along the production chain. they also showed significant common sequence types with human clinical isolates, revealing chicken meat as a likely source for human infection.201323584778
elucidating the aetiology of human campylobacter coli infections.there has been little research on the determinants of campylobacter coli infection, despite its contributing up to 10% of human campylobacter infections. a case-control and two case-case study methods explored the aetiology of c. coli over a one year period across scotland. the case-control multivariate model found an increased risk of c. coli infection in people older than 19 years (o.r. = 3.352), and during the summer months (o.r. = 2.596), while residing in an urban area decreased the risk (o ...201323734204
a higher prevalence rate of campylobacter in retail beef livers compared to other beef and pork meat cuts.the objectives of this study were to determine the prevalence of campylobacter jejuni and campylobacter coli in retail beef, beef livers, and pork meats purchased from the tulsa (ok, usa) area and to further characterize the isolates obtained through antimicrobial susceptibility testing. a total of 97 chilled retail beef (50 beef livers and 47 other cuts), and 100 pork samples were collected. the prevalence of campylobacter in beef livers was 39/50 (78%), while no campylobacter was isolated from ...201323698698
genome sequence of campylobacter showae unswcd, isolated from a patient with crohn's disease.campylobacter showae unswcd was isolated from a patient with crohn's disease. here we present a 2.1 mb draft assembly of its genome.201323409253
could dna uptake be a side effect of bacterial adhesion and twitching motility?dna acquisition promotes the spread of resistance to antibiotics and virulence among bacteria. it is also linked to several natural phenomena including recombination, genome dynamics, adaptation and speciation. horizontal dna transfer between bacteria occurs via conjugation, transduction or competence for natural transformation by dna uptake. among these, competence is the only mechanism of transformation initiated and entirely controlled by the chromosome of the recipient bacteria. while the mo ...201323381940
evidence for phenotypic plasticity among multihost campylobacter jejuni and c. coli lineages, obtained using ribosomal multilocus sequence typing and raman spectroscopy.closely related bacterial isolates can display divergent phenotypes. this can limit the usefulness of phylogenetic studies for understanding bacterial ecology and evolution. here, we compare phenotyping based on raman spectrometric analysis of cellular composition to phylogenetic classification by ribosomal multilocus sequence typing (rmlst) in 108 isolates of the zoonotic pathogens campylobacter jejuni and c. coli. automatic relevance determination (ard) was used to identify informative peaks i ...201323204423
efficacy of oral fecal bacteriotherapy in rhesus macaques (macaca mulatta) with chronic diarrhea.chronic diarrhea remains the principal burden in providing health care for nonhuman primates in biomedical research facilities. although the exact etiology continues to puzzle nonhuman primate clinicians, recent research in humans has shown that restoring the indigenous microbial diversity may be successful in resolving cases of chronic diarrhea when other treatment modalities have failed. the process of restoring this microbial balance, known as fecal bacteriotherapy, uses the complete flora fr ...201323561941
campylobacter infection in poultry-processing workers, virginia, usa, 2008-2011.during a health hazard evaluation, we investigated 29 cases of laboratory-diagnosed campylobacter infection among workers at a poultry-processing plant. most infected employees worked at the plant <1 month, worked as live hangers, and lived at a state-operated center. to lessen the infection risk, we recommended improvements to engineering and administrative controls at the plant.201323347390
a laboratory-developed taqman array card for simultaneous detection of 19 enteropathogens.the taqman array card (tac) system is a 384-well singleplex real-time pcr format that has been used to detect multiple infection targets. here we developed an enteric taqman array card to detect 19 enteropathogens, including viruses (adenovirus, astrovirus, norovirus gii, rotavirus, and sapovirus), bacteria (campylobacter jejuni/c. coli, clostridium difficile, salmonella, vibrio cholerae, diarrheagenic escherichia coli strains including enteroaggregative e. coli [eaec], enterotoxigenic e. coli [ ...201323175269
comparison of three different methods for detection of shiga toxin-producing escherichia coli in a tertiary pediatric care center.shiga toxin-producing escherichia coli (stec) is a well-known cause of sporadic and epidemic food-borne gastroenteritis. a low infectious dose, approximately 10 microorganisms, is sufficient to cause disease that may lead to hemolytic-uremic syndrome. the objective of this study was to compare the performances of an in-house real-time pcr, a commercial enzyme immunoassay (eia) (premier ehec; meridian bioscience), and culture on sorbitol macconkey agar for the detection of stec in a tertiary care ...201323175264
rapid detection of campylobacter antigen by enzyme immunoassay leads to increased positivity rates.campylobacter antigen detection by enzyme immunoassay (eia) provides rapid results compared to traditional culture. however, concern exists regarding specificity. verification studies of an eia compared to culture revealed a positive predictive value (ppv) of 91%, whereas ppv fell to 42% during routine diagnostic testing. we suggest all positive eia results be confirmed via culture.201323175262
symptomatic and asymptomatic campylobacter infections associated with reduced growth in peruvian children.although diarrheal illnesses are recognized as both a cause and effect of undernutrition, evidence for the effect of specific enteropathogens on early childhood growth remains limited. we estimated the effects of undernutrition as a risk factor for campylobacteriosis, as well as associations between symptomatic and asymptomatic campylobacter infections and growth.201323383356
marked host specificity and lack of phylogeographic population structure of campylobacter jejuni in wild birds.zoonotic pathogens often infect several animal species, and gene flow among populations infecting different host species may affect the biological traits of the pathogen including host specificity, transmissibility and virulence. the bacterium campylobacter jejuni is a widespread zoonotic multihost pathogen, which frequently causes gastroenteritis in humans. poultry products are important transmission vehicles to humans, but the bacterium is common in other domestic and wild animals, particularl ...201323356487
loop-mediated isothermal amplification assay for the rapid detection of staphylococcus aureus.staphylococcus aureus, including methicillin-resistant s. aureus (mrsa), is an important human pathogen that produces a variety of toxins and causes a wide range of infections, including soft-tissue infections, bacteremia, and staphylococcal food poisoning. a loop-mediated isothermal amplification (lamp) assay targeting the arcc gene of s. aureus was developed and evaluated with 119 s. aureus and 25 non-s. aureus strains. the usefulness of the assay was compared with the pcr method that targets ...201323509796
disk diffusion method for erythromycin and ciprofloxacin susceptibility testing of campylobacter jejuni and campylobacter coli. 201323269979
detection of campylobacter species and arcobacter butzleri in stool samples by use of real-time multiplex pcr.the presence of campylobacter (or campylobacter-like) species in stools from patients suspected of infectious gastroenteritis (n = 493) was investigated using real-time pcr for detection of arcobacter butzleri (hsp60 gene), campylobacter coli (ceue gene), campylobacter jejuni (mapa), five acknowledged pathogenic campylobacter spp. (c16s_lund assay), and the campylobacter genus (c16s_lvi assay). in total, 71.4% of the samples were positive for campylobacter dna (n = 352) by a campylobacter genus- ...201323152553
using major outer membrane protein typing as an epidemiological tool to investigate outbreaks caused by milk-borne campylobacter jejuni isolates in california.we describe using major outer membrane protein (momp) typing as a screen to compare the campylobacter jejuni pora gene sequences of clinical outbreak strains from human stool with the pora sequences of dairy farm strains isolated during two milk-borne campylobacteriosis outbreak investigations in california. the genetic relatedness of clinical and environmental strains with identical or closely related pora sequences was confirmed by multilocus sequence typing and pulsed-field gel electrophoresi ...201323115263
reply to "disk diffusion method for erythromycin and ciprofloxacin susceptibility testing of campylobacter jejuni and campylobacter coli". 201323269980
evaluation of the culture method nihsj-02 alternative to iso 10272-1:2006 for the detection of campylobacter jejuni and campylobacter coli in chicken: collaborative study.for the surveillance of the prevalence of campylobacter jejuni and campylobacter coli in raw chicken products in japan, a qualitative method, national institute of health sciences japan (nihsj)-02, was developed as an alternative to international organization for standardization (iso) 10272-1:2006. in the nihsj-02 culture method, the enrichment step is carried out in a reduced volume of preston broth at 42 +/- 1 degrees c to reduce cost and space, and to prevent the overgrowth of background bact ...201324282937
multilocus sequence typing of campylobacter jejuni and campylobacter coli strains isolated from environmental waters in the mediterranean area.campylobacter jejuni and campylobacter coli are important animal-related waterborne pathogens that are distributed worldwide. to further understand campylobacter populations in water from the mediterranean area, the genetic diversity of environmental strains was analyzed using multilocus sequence typing (mlst). mlst was also used to determine the potential geographical differences between these bacterial strains and other campylobacters isolated worldwide. the typing study was conducted using 58 ...201324216328
sensitive and rapid detection of campylobacter jejuni and campylobacter coli using loop-mediated isothermal amplification.loop-mediated isothermal amplification (lamp) is an established nucleic acid amplification method offering rapid, accurate, and cost-effective diagnosis of infectious diseases. from the beginning of dna extraction to final detection of campylobacter jejuni and campylobacter coli, the assay requires less than 50 and 90 min from a colony on selective media, and human feces, respectively. for chicken meat samples, the assay requires approximately 24-48 h from the beginning of the enrichment culture ...201323104296
comparison of adhesion, invasion, motility, and toxin production of campylobacter strains and their resistant mutants.the objectives of this study were to compare the in vitro adhesion and invasion of human epithelial cells, motility, and toxin production characteristics of campylobacter-susceptible strains and their fluoroquinolone- or macrolide-resistant mutants. susceptible strains and resistant mutants demonstrated similar adhesion capacities to epithelial cells. for campylobacter coli, fluoroquinolone-resistant mutants with thr86ile or asp90asn substitutions showed a higher rate of invasion of caco-2 cells ...201323095083
experimental infection of weaned piglets with campylobacter coli--excretion and translocation in a pig colonisation trial.campylobacter (c.) is one of the most common food-borne pathogen causing bacterial enteric infections in humans. consumption of meat and meat products that have been contaminated with campylobacter are the major source of infection. pigs are a natural reservoir of campylobacter spp. with c. coli as the dominant species. even though some studies focussed on transmission of c. coli in pig herds and the excretion in faeces, little is known about the colonisation and excretion dynamics of c. coli in ...201322986057
effects of antimicrobials fed as dietary growth promoters on faecal shedding of campylobacter, salmonella and shiga-toxin producing escherichia coli in swine.to determine whether antimicrobials commonly used in swine diets affect zoonotic pathogen shedding in faeces.201323163916
effects of efflux-pump inducers and genetic variation of the multidrug transporter cmeb in biocide resistance of campylobacter jejuni and campylobacter coli.multidrug efflux pumps, such as cmeabc and cmedef, are involved in the resistance of campylobacter to a broad spectrum of antimicrobials. the aim of this study was to analyse the effects of two putative efflux-pump inducers, bile salts and sodium deoxycholate, on the resistance of campylobacter to biocides (triclosan, benzalkonium chloride, chlorhexidine diacetate, cetylpyridinium chloride and trisodium phosphate), sds and erythromycin. the involvement of the cmeabc and cmedef efflux pumps in th ...201323161768
campylobacter spp. - prevalence on pig livers and antimicrobial susceptibility.the objective of the study was to determine the prevalence of campylobacter spp. on surfaces of slaughtered pig livers. multilocus sequence typing (mlst) was performed to determine the sequence types (sts) of selected campylobacter coli isolates. additionally, c. coli and campylobacter jejuni isolates were tested for antimicrobial susceptibility by the broth dilution method. the minimal inhibitory concentrations were determined for erythromycin, gentamicin, ampicillin, ampicillin/sulbactam, nali ...201323040119
effects of feeding finisher pigs with chicory or lupine feed for one week or two weeks before slaughter with respect to levels of bifidobacteria and campylobacter.this study aimed to assess whether inclusion of chicory or lupine (prebiotics) in the diet of pre-slaughter pigs for just 1 or 2 weeks could change the composition of their intestinal microbiota, stimulate the growth of bifidobacteria and help to lower the amount of thermoplilic campylobacter spp. (mainly campylobacter jejuni and campylobacter coli), which are a major cause of food-borne infections in humans. a total of 48 pigs that had an initial live weight of 90 kg were fed with either a lupi ...201323031645
detection and genotyping of campylobacter jejuni and campylobacter coli by use of dna oligonucleotide arrays.campylobacter have emerged as the most common bacterial food-borne illness in the developed world. the ability to reduce campylobacter infections in humans is linked to the full comprehension of the principal key aspects of its infection cycle. a microbial diagnostic microarray detecting campylobacter housekeeping, structural, and virulence associated genes was designed and validated using genomic dna from reference and field strains of campylobacter jejuni and coli isolated from human, chicken, ...201322354794
antimicrobial activity of essential oils and five terpenoid compounds against campylobacter jejuni in pure and mixed culture experiments.the aim of this study was to examine the antimicrobial potential of three essential oils (eos: tea tree oil, lemon myrtle oil and leptospermum oil), five terpenoid compounds (α-bisabolol, α-terpinene, cineole, nerolidol and terpinen-4-ol) and polyphenol against two strains of campylobacter jejuni (acm 3393 and the poultry isolate c338), campylobacter coli and other gram negative and gram positive bacteria. different formulations of neem oil (azadirachta indica) with these compounds were also tes ...201324041998
preventing campylobacter at the source: why is it so difficult?campylobacteriosis in humans, caused by campylobacter jejuni and campylobacter coli, is the most common recognized bacterial zoonosis in the european union and the united states. the acute phase is characterized by gastrointestinal symptoms. the long-term sequelae (guillain-barré syndrome, reactive arthritis, and postinfectious irritable bowel syndrome) contribute considerably to the disease burden. attribution studies identified poultry as the reservoir responsible for up to 80% of the human ca ...201324014733
food-borne zoonotic pathogens and antimicrobial resistance of indicator bacteria in urban wild boars in barcelona, spain.wildlife is increasingly abundant in urban environments, but little is known about the zoonotic pathogens carried by these populations. urban wild boars are of particular concern because this species is well-known as a pathogen reservoir, and thus, we studied selected zoonotic pathogens in urban wild boars in barcelona, spain (n=41). salmonella enterica was found in 5.00% (95% ci 0.61-16.91) and campylobacter coli in 4.88% (95% ci 0.6-16.53) of the animals. e. coli o157:h7 and c. jejuni were not ...201323992794
prevalence and antimicrobial resistance of campylobacter spp. isolated from poultry carcasses in poland.the purpose of the present study was to determine the prevalence of campylobacter in poultry carcasses at slaughter in poland. for the isolated strains, resistance to selected antibiotics and the associated genetic determinants were identified. a total of 498 campylobacter isolates were obtained from 802 poultry samples during the 2-year study period. strains were identified to species with the pcr method; 53.6% of the strains were campylobacter jejuni and 46.4% were campylobacter coli. a high p ...201323905805
review of current methodologies to isolate and identify campylobacter spp. from foods.this article summarizes the most effective protocols to isolate campylobacter spp. (mainly campylobacter jejuni and campylobacter coli) from food, primarily poultry products, and includes a summary of the current methods recommended by the food and drug administration and the u.s. department of agriculture in the usa, and iso in europe. the recommended temperature for incubation of the samples throughout the isolation procedure is 42°c. the enrichment of the samples for 48h, which can be perform ...201323899774
inhibitory effect of high-dosage zinc oxide dietary supplementation on campylobacter coli excretion in weaned piglets.this study investigated the impact of zinc oxide (zno) on campylobacter coli by in vivo and in vitro assays.201323869938
widespread acquisition of antimicrobial resistance among campylobacter isolates from uk retail poultry and evidence for clonal expansion of resistant lineages.antimicrobial resistance is increasing among clinical campylobacter cases and is common among isolates from other sources, specifically retail poultry - a major source of human infection. in this study the antimicrobial susceptibility of isolates from a uk-wide survey of campylobacter in retail poultry in 2001 and 2004-5 was investigated. the occurrence of phenotypes resistant to tetracycline, quinolones (ciprofloxacin and naladixic acid), erythromycin, chloramphenicol and aminoglycosides was qu ...201323855904
potential of a commercially available water acidification product for reducing campylobacter in broilers prior to slaughter.1. this study investigated the potential of a commercially available acidified water treatment (pwt) for reducing the number of campylobacter in vitro and other bacteria in the gut of live broilers. 2. in vitro tests indicated that pwt was highly effective for reducing campylobacter jejuni and campylobacter coli at the recommended concentration in water, reducing populations by greater than 7 log10 cfu/ml after 24 h exposure. the decrease in the number of salmonella serovar enteritidis and esche ...201323796116
prevalence of campylobacter spp. relative to other enteric pathogens in grow-finish pigs with diarrhea.salmonella spp., lawsonia intracellularis, and brachyspira spp. are pathogens commonly associated with diarrhea in growing and finishing pigs. brachyspira spp. infection has recently reemerged as a significant concern due to an increase in the incidence of swine dysentery; however, the mechanisms underlying this increase in dysentery remain largely unknown. pigs are also well-recognized as potential carriers of campylobacter spp., particularly campylobacter coli, yet enteric disease in swine ass ...201323792232
absence of class 1 and class 2 integrons among campylobacter jejuni and campylobacter coli isolated from poultry in italy. 201323788478
pathogenic microbiological baseline survey of pork carcasses in taiwan.from 2004 to 2010, pork carcass swabs from state-inspected slaughter plants in taiwan were intermittently analyzed to determine the prevalence of selected pathogenic microorganisms associated with foodborne illness. the prevalences of staphylococcus aureus each year from 2006 to 2010 were 6.6, 10.8, 5.1, 6.4, and 7.4%, respectively, while those of listeria monocytogenes were 1.2% in 2004, 1.3% in 2005, and 3.5% in 2008. the prevalences of clostridium perfringens were 0.9% in 2004, 3.2% in 2005, ...201323726203
demographic and clinical characteristics of campylobacter bacteremia in children with and without predisposing factors.campylobacter, a common cause of childhood gastroenteritis, rarely causes bacteremia, which is reported mainly in immune-compromised children. our aim was to compare demographic and clinical characteristics of childhood campylobacter bacteremia (cb) between children with and without risk factors for cb.201323694835
prevalence of campylobacter jejuni and campylobacter coli species in cats and dogs from bydgoszcz (poland) region.the aim of this study was to investigate the role of cats and dogs as a potential reservoir of campylobacter spp. rectal swabs from 83 dogs and 71 cats were examined. samples were obtained from the animals aged between 2 weeks and 24 months living in shelters, private households, farms and from veterinary clinics located in bydgoszcz region during routine check-up. campylobacter spp. were isolated from 4.81% dogs and 9.86% cats, respectively. c. jejuni was predominant in this study. all strains ...201323691584
occurrence of campylobacter and salmonella in ducks and duck eggs in selangor, malaysia.the importance of campylobacter and salmonella as foodborne pathogens is well recognised globally. a recent work in penang found ducks in commercial farms were infected with these organisms. the aim of the study was to detect the presence of campylobacter and salmonella in ducks and salmonella in duck eggs in farms in a small part of selangor. cloacal swabs were obtained from 75 ducks and 30 duck eggs from three farms. the isolation and identification of campylobacter and salmonella were done us ...201323665722
campylobacter coli outbreak in men who have sex with men, quebec, canada, 2010-2011.during september 2010-november 2011, a cluster of erythromycin-susceptible, tetracycline- and ciprofloxacin-resistant campylobacter coli pulsovar 1 infections was documented, involving 10 case-patients, in montreal, quebec, canada. the findings suggested sexual transmission of an enteric infection among men who have sex with men.201323647786
characterization of the campylobacter jejuni cryptic plasmid ptiw94 recovered from wild birds in the southeastern united states.the complete nucleotide sequence was determined for a cryptic plasmid, ptiw94, recovered from several campylobacter jejuni isolates from wild birds in the southeastern united states. ptiw94 is a circular molecule of 3860 nucleotides, with a g+c content (31.0%) similar to that of many campylobacter spp. genomes. a typical origin of replication, with iteron sequences, was identified upstream of dna sequences that demonstrated similarity to replication initiation proteins. a total of five open read ...201323639726
using campylobacter spp. and escherichia coli data and bayesian microbial risk assessment to examine public health risks in agricultural watersheds under tile drainage management.human campylobacteriosis is the leading bacterial gastrointestinal illness in canada; environmental transmission has been implicated in addition to transmission via consumption of contaminated food. information about campylobacter spp. occurrence at the watershed scale will enhance our understanding of the associated public health risks and the efficacy of source water protection strategies. the overriding purpose of this study is to provide a quantitative framework to assess and compare the rel ...201323623467
aerobic growth of campylobacter in media supplemented with c3-monocarboxylates and c4-dicarboxylates.experiments were conducted to examine aerobic growth of campylobacter spp. in basal media supplemented with c4-dicarboxylates (fumarate, succinate, or malate) and c3-monocarboxylates (pyruvate or lactate). basal medium was supplemented with 30 mm fumarate, succinate, or malate and 0 to 100 mm lactate or pyruvate; inoculated with 10(6) cfu/ml of campylobacter coli, campylobacter fetus, or campylobacter jejuni; then incubated aerobically at 37 °c for 72 h. optical density (od) of cultures was meas ...201323575134
improvement of karmali agar by addition of polymyxin b for the detection of campylobacter jejuni and c. coli in whole-chicken carcass rinse.the karmali agar was modified by supplementation with a high concentration of polymyxin b. the goal of the study was to evaluate the effect of a high concentration of polymyxin b on the ability and selectivity of the modified karmali agar to isolate campylobacter jejuni and campylobacter coli from whole chicken carcass rinse. a total of 80 whole chickens were rinsed with 400 ml of buffer peptone water. the rinsed samples were incubated with 2× blood-free modified bolton enrichment broth for 48 h ...201323550907
improved protocol for isolation of campylobacter spp. from retail broiler meat and use of pulsed field gel electrophoresis for the typing of isolates.to improve the detection of campylobacter spp. in retail broiler meat, a reference method (r subsamples) based on the enrichment of 25 g of meat in bolton broth at 42°c under microaerobiosis was compared with an alternative method (a subsamples) consisting in the rinsing of meat samples for 30s in buffered peptone water with antimicrobials with incubation at 42°c under aerobiosis. one piece of meat (breasts, tenderloins and thighs) was rinse in experiment 1 (a1) and two pieces in experiment 2 (a ...201323545445
salmonella, campylobacter, and chlamydophila in bald ibis (geronticus eremita) feces in turkey.the aim of this study was to investigate the presence of campylobacter spp., salmonella spp., and chlamydophila psittaci in fecal samples of bald ibises (geronticus eremita) housed in a conservation facility in turkey. a total of 82 fecal samples were collected from cages and evaluated by bacteriologic methods and a polymerase chain reaction (pcr) technique for campylobacter spp. and salmonella spp. and by pcr for c. psittaci. campylobacter spp. were isolated from 24 of 82 fecal samples (29.2%). ...201323505699
development of a selective enrichment broth supplemented with bacteriological charcoal and a high concentration of polymyxin b for the detection of campylobacter jejuni and campylobacter coli in chicken carcass rinses.a new campylobacter-selective enrichment broth supplemented with bacteriological charcoal and a high concentration of polymyxin b was developed (charcoal-cefoperazone-polymyxin b-deoxycholate broth; ccpd broth). we compared the ability of ccpd broth to detect campylobacter jejuni and campylobacter coli in chicken carcass rinses to that of modified bolton (mbolton) broth. eighty whole chickens were purchased from retailers and rinsed with 400 ml buffered peptone water. the rinsed samples were enr ...201323474610
evaluation of fecal calprotectin in campylobacter concisus and campylobacter jejuni/coli gastroenteritis.calprotectin (cp) is a calcium-binding cytosolic neutrophil protein and the concentration in feces reflects the migration of neutrophils into the gut lumen. testing for fecal cp (f-cp) in patients with negative cultures for enteric pathogens is widely accepted as a useful screening tool for identifying patients who are most likely to benefit from endoscopy for suspected inflammatory bowel disease (ibd) with the assumption that a negative f-cp is compatible with a functional disorder. campylobact ...201323448294
importance of the producer on retail broiler meat product contamination with campylobacter spp.campylobacter spp. are a leading cause of human bacterial gastroenteritis worldwide, with poultry meat being considered the most important source of the infection. to obtain data on broiler meat contamination with campylobacter spp. in lithuania, the occurrence, counts and genotypes of these pathogens on raw broiler meat products from different producers were examined.201323400735
antimicrobial susceptibilities of campylobacter jejuni and campylobacter coli strains isolated from two early stages of poultry production.our aim was to monitor the resistance of campylobacter isolates from two initial stages of broiler production in 5 grandparent breeder broiler farms (gpbfs) and 12 parent breeder broiler farms (pbfs) in which no antimicrobials were used during the study. susceptibility tests were carried out for 805 strains (697 campylobacter jejuni and 108 campylobacter coli) against nalidixic acid, ciprofloxacin, erythromycin, amoxicillin, amoxicillin plus clavulanic acid, tetracycline, gentamicin, and chloram ...201323391315
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