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d-glyceraldehyde-3-phosphate dehydrogenase. complete amino-acid sequence of the enzyme from bacillus stearothermophilus.1. the complete amino acid sequence of d-glyceraldehyde-3-phosphate dehydrogenase from the moderate thermophile bacillus stearothermophilus has been determined. 2. this has been achieved largely by the automated sequence analysis of large fragements derived by chemical cleavage with cyanogen bromide, bnps-skatole [the product of reaction between n-bromosuccinimide and 2-(nitrophenyl-sulphenyl)-3-methylindole] and hydroxylamine and enzymic hydrolysis with trypsin at arginine residues. 3. the sequ ...19807408868
heat stability of a tetrameric enzyme, d-glyceraldehyde-3-phosphate dehydrogenase.the tetrameric enzyme d-glyceraldehyde-3-phosphate dehydrogenase from the moderate thermophile bacillus stearothermophilus is more stable to thermal denaturation than its counterpart from lobster muscle [harris et al. (1980) eur. j. biochem. 108, 535-547]. extra buried ionic bonds between subunits of the thermophilic enzyme make an important contribution to thermal stabilisation. further stabilisatio of the tetrameric enzyme is derived from additional hydrophobic interactions between the s-loops ...19807408869
mechanism of protein synthesis inhibition during stationary phase in bacillus stearothermophilus.the appearance of a protein (association factor i) in ribosomes from bacillus stearothermophilus at stationary phase of growth is described. association factor i is present on 30s subunits and 30s-50s ribosomal couples, but not on 50s subunits. this protein is responsible for the low levels of polyphenylalanine synthesis shown by stationary phase ribosomes. association factor i is able to bind to free 30s-50s ribonsomal couples but not to polysomes, and exerts its effect by inhibiting the initia ...19807412766
effect of restrictive temperature on cell wall synthesis in a temperature-sensitive mutant of bacillus stearothermophilus.a temperature-sensitive mutant of bacillus stearothermophilus, ts-13, was unable to grow above 58 degrees c, compared to 72 degrees c for the wild type. actively growing ts-13 cells lysed within 2 h when exposed to a restrictive temperature of 65 degrees c. peptidoglycan synthesis stopped within 10 to 15 min postshift before a shut down of other macromolecular syntheses. composition of preexisting peptidoglycan was not altered, nor was new peptidoglycan of aberrant composition formed. no signifi ...19807419492
[possibility of dna-ligase participation in regulating the synthesis and degradation of heat-damaged dna in permeable bacillus stearothermophilus cells].the chromosome of bacillus stearothermophilus was found to contain apurine regions which were repaired mainly by excisions. in the permeable cells of the thermophilic bacterium, the observed intensive degradation and resynthesis of dna were regulated by active dna ligase. in this case, nad (the cofactor of ligase) sharply inhibited the atp-dependent and independent synthesis of dna. apparently, dna ligase may be involved in the regulation of degradation and resynthesis of dna with thermal lesion ...19807442567
formation and energy transfer of a fluorescent derivative of b. stearothermophilus glyceraldehyde-3-phosphate dehydrogenase.the active site carboxymethylated glyceraldehyde-3-phosphate dehydrogenase from b. stearothermophilus when irradiated with ultraviolet light in the presence of nad gives rise to a fluorescent derivative closely similar to that obtained from the muscle enzyme in fluorescence properties. a radiationless energy transfer also occurs between the tryptophan residues of the enzyme protein and the new fluorophore, as for the muscle enzyme. quantitative determinations of the quantum yields and calculatio ...19807448190
[functional model of mn-superoxide dismutase from bacillus stearothermophilus]. 19807448234
purificaton of the pyruvate dehydrogenase multienzyme complex of bacillus stearothermophilus and resolution of its four component polypeptides.1. the pyruvate dehydrogenase complex was purified from bacillus stearothermophilus in high yield. the specific activity (about 40nkat/mg of protein) was substantially lower than that of the pyruvate dehydrogenase complex from escherchia coli (about 570nkat/mg of protein) measured at 30 degrees c under the same conditions. 2. the relative molecular masses of the four types of polypeptide chain i the complex were estimated by means of sodium dodecyl sulphate/polyacrylamide-gel electrophoresis to ...19807458900
[principles of steam sterilization. comparison of biological and chemical indicators]. 19807459030
purification and properties of deoxyribonucleic acid polymerase from bacillus stearothermophilus.deoxyribonucleic acid polymerase i was purified from bacillus stearothermophilus to 50 to 70% homogeneity. its molecular weight was 76,000. the enzyme was insensitive to sulfhydryl blocking agents and showed maximal activity at 60 degrees c, ph 8 to 9, 0.25 m kcl, and 0.02 m mgso4. the rate of heat inactivation of the deoxyribonucleic acid polymerase followed first-order kinetics with a half-life of 90 min at 60 degrees c; the addition of 0.05% bovine serum albumin protected the enzyme, which co ...19817462144
sequence homology in the amino-terminal and active-site regions of thermolabile glyceraldehyde-3-phosphate dehydrogenase from a thermophile.the unusual thermolability of glyceraldehyde-3-phosphate dehydrogenase from the facultative thermophile bacillus coagulans ku (crabb et al., biochemistry 16:4840-4847, 1977) has provided the first opportunity to study a homologous enzyme from the same genus that exhibits a marked difference in thermostability. in pursuit of the structural bases for the thermostability of proteins, the sequences of the amino terminus (residues 1 through 27) and the active-site cysteine cyanogen bromide peptide (r ...19817462149
thermostability and aliphatic index of globular proteins.a statistical analysis shows that the aliphatic index, which is defined as the relative volume of a protein occupied by aliphatic side chains (alanine, valine, isoleucine, and leucine), of proteins of thermophilic bacteria is significantly higher than that of ordinary proteins. the index may be regarded as a positive factor for the increase of thermostability of globular proteins.19807462208
the use of various immobilized-triazine affinity dyes for the purification of 6-phosphogluconate dehydrogenase from bacillus stearothermophilus.1. 6-phosphogluconate dehydrogenase from bacillus stearothermophilus was purified approximately 260-fold on triazine-immobilized dye columns to a final specific activity of 54 mumol of nadp+ reduced/min per mg of protein and an overall yield of 62%. 2. an investigation of the capacities of different triazine dyes that inhibit 6-phosphogluconate dehydrogenase was carried out. cibacron blue f3g-a and procion red he-3b strongly inhibited the enzyme in free solution and were therefore chosen as the ...19807470099
an integrated kinetic analysis of intermediates and transition states in protein folding reactions.relaxation rates for folding and unfolding of two proteins have been measured over a range of denaturant concentrations to examine the reaction pathways leading to the late transition state. the proteins were chosen for their marked differences in both kinetic and structural properties. results for the n-terminal domain of phosophoglycerate kinase (n-pgk), from bacillus stearothermophilus, reveal the existence of a single intermediate (pathway = u-i-f), and obey the general relationship: kobs = ...19957473751
effectiveness of steam sterilization in killing spores of bacillus stearothermophilus in prophylaxis angles. 19947489880
sucrose reduces the efficiency of protein denaturation by a chaotropic agent.sugars and polyols are used to stabilize proteins. the degree of stabilization conferred on a model protein by sucrose was calculated in terms of the free energy of folding. phosphoglycerate kinase (pgk) was denatured by guanidine hydrochloride (guhcl) in different sucrose concentrations. the linear extrapolation method [1,2] was used to calculate the free energy of folding in the absence of denaturant. although sucrose increased the concentration of guhcl required to unfold the protein, the fre ...19957492597
solution structure of the hu protein from bacillus stearothermophilus.the histone-like protein hu from bacillus stearothermophilus is a dimer with a molecular mass of 19.5 kda that is capable of bending dna. an x-ray structure has been determined, but no structure could be established for a large part of the supposed dna-binding beta-arms. using distance and dihedral constraints derived from triple-resonance nmr data of a 13c/15n doubly-labelled hu protein 49 distance geometry structures were calculated, which were refined by means of restrained molecular dynamics ...19957500343
clustering and co-transcription of the bacillus subtilis genes encoding the aminoacyl-trna synthetases specific for glutamate and for cysteine and the first enzyme for cysteine biosynthesis.the bacillus subtilis cyse and cyss genes encoding, respectively, the serine acetyltransferase and the cysteinyl-trna synthetase were found downstream from the gltx gene encoding the glutamyl-trna synthetase. this gene organization is also conserved in bacillus stearothermophilus where the cyse and cyss genes show high amino acid identity with those of b. subtilis. in both organisms the coding sequences of cyse and cyss overlap, suggesting a translational coupling. b. subtilis cyse and cyss were ...19947510287
the s-layer from bacillus stearothermophilus dsm 2358 functions as an adhesion site for a high-molecular-weight amylase.the s-layer lattice from bacillus stearothermophilus dsm 2358 completely covers the cell surface and exhibits oblique symmetry. during growth of b. stearothermophilus dsm 2358 on starch medium, three amylases with molecular weights of 58,000, 98,000, and 184,000 were secreted into the culture fluid, but only the high-molecular-weight enzyme was found to be cell associated. studies of interactions between cell wall components and amylases revealed no affinity of the high-molecular-weight amylase ...19957533757
protein-rrna binding features and their structural and functional implications in ribosomes as determined by cross-linking studies.we have investigated protein-rrna cross-links formed in 30s and 50s ribosomal subunits of escherichia coli and bacillus stearothermophilus at the molecular level using uv and 2-iminothiolane as cross-linking agents. we identified amino acids cross-linked to rrna for 13 ribosomal proteins from these organisms, namely derived from s3, s4, s7, s14, s17, l2, l4, l6, l14, l27, l28, l29 and l36. several other peptide stretches cross-linked to rrna have been sequenced in which no direct cross-linked am ...19957556101
cloning and complete sequence of the dna polymerase-encoding gene (bstpoli) and characterisation of the klenow-like fragment from bacillus stearothermophilus.a fragment of the dna polymerase i-encoding gene (poli) from bacillus stearothermophilus (bst) was obtained by pcr. this was used as a probe to obtain a full-length gene from a bst genomic dna (gdna) plasmid library. comparison of the sequence to b. caldotenax (bca) showed about 93% homology at the amino acid (aa) level. a klenow-like (bstpolik) clone was developed and the recombinant protein displayed dna polymerase activity similar to the wild-type bstpoli enzyme.19957557480
regulation of groe expression in bacillus subtilis: the involvement of the sigma a-like promoter and the roles of the inverted repeat sequence (circe).to study the regulatory mechanism controlling the heat-inducible expression of bacillus subtilis groe, two regulatory elements, the sigma a-like promoter and the inverted repeat (ir [circe]) in the control region, were characterized. the groe promoter was shown to be transcribed by the major rna polymerase under both heat shock and non-heat shock conditions. the ir was found to have two functions. (i) it ensures the fast turnover of the groe transcript, and (ii) it serves as an operator. this ir ...19957559325
novel insertion sequence-like element is982 in lactococci.a novel insertion sequence-like (is) element, designated is982, was found on the lactose plasmid, psk11l, from lactococcus lactis subsp. cremoris sk11 and was located between the origin of replication and the oligopeptide transport gene cluster. the 1003-base pair (bp) is982 was flanked by 18-bp perfect inverted repeats. is982 contained an open reading frame encoding a putative transposase of 296 amino acids. an almost identical is-like element (99% dna sequence identity) was cloned and partiall ...19957568469
purification and partial characterization of a novel thermophilic carboxylesterase with high mesophilic specific activity.an esterase activity obtained from a strain of bacillus stearothermophilus was purified 5,133-fold to electrophoretic homogeneity with 26% recovery. the purified esterase had a specific activity of 2,032 mumol min-1 mg-1 based on the hydrolysis of p-nitrophenyl caproate at ph 7.0 and 30 degrees c. the apparent molecular mass was 50,000 +/- 2,000 daltons from sodium dodecyl sulfate-polyacrylamide gel electrophoresis and 45,000 +/- 3,000 daltons from gel filtration. native polyacrylamide gels stai ...19957576531
biological indicators for low temperature steam and formaldehyde sterilization: the effect of defined media on sporulation, growth index and formaldehyde resistance of spores of bacillus stearothermophilus strains.preliminary screening was carried out on spores of 29 strains of bacillus stearothermophilus to determine their potential as biological indicator organisms for low temperature steam and formaldehyde sterilization. each strain was sporulated on four chemically defined media. fourteen strains produced satisfactory sporulation on one or more of the media but there was considerable variation in the extent of sporulation. the growth index of the spores, which was dependent on both the strain of organ ...19957592136
comparative evaluation of the antibacterial effects of intracanal nd:yag laser irradiation: an in vitro study.the purpose of this study was to determine if the nd:yag laser was capable of disinfecting contaminated root canals in vitro. eighty canals of extracted single-rooted teeth were prepared to size 35 k-file. the teeth were sterilized with ethylene oxide gas and then inoculated with bacillus stearothermophilus. eight groups were treated as follows: 1, sterility control; 2, positive control, no treatment; 3, hand instrumentation with sterile water filling chamber; 4, hand instrumentation with naocl ...19957595155
phosphofructokinase deficiency: recent advances in molecular biology.phosphofructokinase (pfk) plays a major role in glycolysis. deficiency of pfk-m is characterized by muscle weakness due to fuel crisis in exercising muscles. to elucidate the gene defect of pfk-deficient patients, we have cloned and determined the complete structure and transcription mechanism of human pfk-m mrna and gene. molecular defects were investigated in three unrelated japanese family cases. the first case was characterized by a point mutation at the donor site of intron 15 of the pfk-m ...19957603524
thermostability of respiratory terminal oxidases in the lipid environment.the effect of the lipid environment on the thermostability of three respiratory terminal oxidases was determined. cytochrome-c oxidase from beef heart and bacillus stearothermophilus were used as representative proteins from mesophilic and thermophilic origin, respectively. quinol oxidase from the archaeon sulfolobus acidocaldarius represented the model for a extreme thermoacidophilic enzyme. all three integral membrane proteins were tested for their thermal inactivation in detergent and after r ...19957612641
[microbial resistance to formaldehyde. iii> dependence of the microbial effect on staphylococcus aureus, enterococcus faecium and spores of bacillus stearothermophilus on temperature].temperature dependence of microbicidal efficacy of formaldehyde was examined with suspension tests (ph 7.0). test germs were staphylococcus aureus, enterococcus faecium and spores of bacillus stearothermophilus. the methodology was nearly the same as in previous investigations (5, 7). at given exposure periods and temperatures formaldehyde concentrations necessary to produce a microbicidal effect of log (n/n0) = -4.0 (concentrations of equal efficacy) were determined. n and n0 represent the numb ...19957619203
modified microbiological method for the screening of antibiotics in milk.the bacillus stearothermophilus disc assay is routinely used by the dairy industry to screen milk for antibiotic residues. although the assay detects the presence of beta-lactam antibiotics, it does not distinguish cephalosporins from other beta-lactam antibiotics. in this study, the b. stearothermophilus disc assay was modified to allow it to distinguish parent ceftiofur from other antibiotics by incorporation of the enzymes penicillinase and cephalosporinase into the assay. the modified b. ste ...19957622714
significance of phe-220 and gln-221 in the catalytic mechanism of farnesyl diphosphate synthase of bacillus stearothermophilus.farnesyl diphosphate synthase [ec 2.5.1.10] from bacillus stearothermophilus was specifically altered at two amino acid residues by using site-directed mutagenesis. the highly conserved phe and gln residues at the sequential amino acid positions 220-221 in an upstream part of the putative substrate binding site were replaced with ala and glu, respectively. these mutageneses (f220a and q221e) resulted in 10(-5) and 10(-3) decreases in catalytic activity of farnesyl diphosphate synthesis, respecti ...19957626083
homogeneity of the pyruvate dehydrogenase multienzyme complex from bacillus stearothermophilus.the pyruvate dehydrogenase multienzyme complex was purified from bacillus stearothermophilus by means of six gel-filtration column chromatographies; once on cellulofine gcl-2000, twice on sepharose cl-2b, and three times on sephacryl s-500hr. the molecular size distribution of the complex was examined in detail by gel-filtration chromatography, analytical and sucrose-density ultracentrifugations, and dynamic light scattering. the complex was found to be homogeneous; a dimeric complex was undetec ...19957629008
molecular cloning and nucleotide sequences of the genes for two essential proteins constituting a novel enzyme system for heptaprenyl diphosphate synthesis.the genes encoding two dissociable components essential for bacillus stearothermophilus heptaprenyl diphosphate synthase (all-trans-hexparenyl-diphosphate:isopentenyl-diphosphate hexaprenyl-trans-transferase, ec 2.5.1.30) were cloned, and their nucleotide sequences were determined. sequence analyses revealed the presence of three open reading frames within 2,350 base pairs, designated as orf-1, orf-2, and orf-3 in order of nucleotide sequence, which encode proteins of 220, 234, and 323 amino aci ...19957629164
crystallography of ribosomes: attempts at decorating the ribosomal surface.crystals of various ribosomal particles, diffracting best to 2.9 a resolution were grown. crystallographic data were collected from shock frozen crystals with intense synchrotron radiation at cryo temperature. for obtaining phase information, monofunctional reagents were prepared from an undecagold and a tetrairidium cluster, by attaching to them chemically reactive handles, specific for sulfhydryl moieties. heavy-atom derivatives were prepared by a specific and quantitative binding of the undec ...19957632877
structure and posttranslational modification of lipoyl domain of 2-oxo-acid dehydrogenase multienzyme complexes. 19957651225
co-overexpression of prlf increases cell viability and enzyme yields in recombinant escherichia coli expressing bacillus stearothermophilus alpha-amylase.the effects on cloned amylase production of co-overexpression of prlf, a gene that appears to interact with the sec protein export machinery in escherichia coli, was investigated by comparing three expression systems: (i) a high copy number plasmid with the bacillus stearothermophilus alpha-amylase gene (amys) cloned with its promoter downstream of the lac promoter; (ii) a pbr322-based vector with amys under control of the indigenous bacillus promoter; and (iii) a temperature-inducible vector wi ...19957654312
calculation of the molecular masses of two newly synthesized thermostable enzymes isolated from thermophilic microorganisms.two thermostable enzymes synthesized by thermophilic microorganisms were isolated and purified. a thermostable beta-galactosidase was produced in a continuous fermentation process by bacillus stearothermophilus tp 32 as an intracellular enzyme. after applying different concentration procedures the raw extract enzyme was prepurified on a sephadex g-200 size exclusion column. the isolated beta-galactosidase fraction was then separated with hplc on a tsk g 3000 sw size exclusion column to determine ...19957655618
evaluation of a rapid readout biological indicator for 121 degrees c gravity and 132 degrees c vacuum-assisted steam sterilization cycles.a biological indicator (bi), based on fluorescent detection of a spore-associated enzyme, has been developed. we evaluated the new bi against five conventional self-contained bis in a 121 degrees c gravity-displacement sterilizer and, packaged in towel packs and disposable steam test packs, in a 132 degrees c vacuum-assisted sterilizer.19957657976
a cluster of fever and hypotension on a surgical intensive care unit related to the contamination of plasma expanders by cell wall products of bacillus stearothermophilus.to evaluate an outbreak of fever and hypotension after cardiac surgical procedures and the role of polygeline, a plasma expander.19957657985
circular permutation within the coenzyme binding domain of the tetrameric glyceraldehyde-3-phosphate dehydrogenase from bacillus stearothermophilus.a circularly permuted (cp) variant of the phosphorylating nad-dependent glyceraldehyde-3-phosphate dehydrogenase (gapdh) from bacillus stearothermophilus has been constructed with n- and c-termini created within the coenzyme binding domain. the cp variant has a kcat value equal to 40% of the wild-type value, whereas km and kd values for nad show a threefold decrease compared to wild type. these results indicate that the folding process and the conformational changes that accompany nad binding du ...19957663355
x-ray crystallography shows that translational initiation factor if3 consists of two compact alpha/beta domains linked by an alpha-helix.the structures of the two domains of translational initiation factor if3 from bacillus stearothermophilus have been solved by x-ray crystallography using single wavelength anomalous scattering and multiwavelength anomalous diffraction. each of the two domains has an alpha/beta topology, with an exposed beta-sheet that is reminiscent of several ribosomal and other rna binding proteins. an alpha-helix that protrudes out from the body of the n-terminal domain towards the c-terminal domain suggests ...19957664745
thermophilic bacilli have split cytochrome b genes for cytochrome b6 and subunit iv. first cloning of cytochrome b from a gram-positive bacterium (bacillus stearothermophilus). 19957665630
discovery of a ptshi operon, which includes a third gene (ptst), in the thermophile bacillus stearothermophilus.the discovery of ptshi operon in bacillus stearothermophilus xl-65-6 coupled with our previous report of a cel operon (lai & ingram, j bacteriol 175, 6441-6450, 1993) demonstrates that this thermophilic organism contains all of the genes required for cellobiose uptake by the phosphoenolpyruvate-dependent phosphotransferase system (pts). genes encoding the two general pts proteins, hpr (ptsh) and enzyme i (ptsi), were cloned and sequenced. these form an operon which includes a third small gene (p ...19957670643
diversified sequences of peptide epitope for same-rna recognition.we replaced an essential rna-binding, 30-amino acid helix-loop in an escherichia coli trna synthetase with an inactive and simplified "generic" sequence having 23 of the 30 amino acids as alanine and serine. wild-type residues were restored in random combinations to generate a library with a sequence complexity of about 1.9 x 10(7). active molecules were obtained by genetic selection at a frequency of approximately 1% and contained variants with as many as 11 alanine/serine replacements and a to ...19937694278
interaction of component enzymes with the peripheral subunit-binding domain of the pyruvate dehydrogenase multienzyme complex of bacillus stearothermophilus: stoichiometry and specificity in self-assembly.the interaction between the pyruvate decarboxylase (e1) component and a di-domain (lipoyl domain plus peripheral subunit-binding domain) from the dihydrolipoyl acetyltransferase (e2) component of the bacillus stearothermophilus pyruvate dehydrogenase multienzyme complex was investigated. only 1 mol of di-domain (binding domain) was bound to 1 mol of heterotetrameric e1 (alpha 2 beta 2) and the binding was without effect on the kinetic activity of e1. similarly, the di-domain bound to separate e1 ...19957702567
improved specificity toward substrates with positively charged side chains by site-directed mutagenesis of the l-lactate dehydrogenase of bacillus stearothermophilus.the substrate specificities of l-alpha-hydroxy acid dehydrogenases, including l-lactate dehydrogenases (l-ldh's), can often be quite broad. however, an ldh with high catalytic activity toward alpha-keto acids with positively charged side chains, such as those containing ammonium groups, has not been described, even though there is evidence from metabolic studies that a natural dehydrogenase with such activity might exist in nature. l-omega-amino-alpha-hydroxy acids are important intermediates in ...19957703235
studies on thermophile products. x. further biological properties of isofatty acid-containing phosphatidylglycerol that enhances the induction of suppressor t cells.isofatty acid-containing phosphatidylglycerol (fr. 7-c), isolated from bacillus stearothermophilus ubt8038, enhances the induction of concanavalin a (con a)-activated suppressor t (ts) cells in a dose dependent manner (0.01-1 microgram/ml). its further biological properties on mouse mixed lymphocyte reaction (mlr) has been demonstrated. fr. 7-c (0.01-1 microgram/ml) suppressed the mlr at 4 d in a dose-dependent manner when added at the start of splenocyte cultivation. moreover, fr. 7-c was effec ...19947703960
analysis of the role of the kmsks loop in the catalytic mechanism of the tyrosyl-trna synthetase using multimutant cycles.a mobile loop in tyrosyl-trna synthetase, which corresponds to the kmsks signature sequence of class i aminoacyl-trna synthetases, destabilizes the e.tyr.atp complex but stabilizes the following e.[tyr-atp]not equal to transition state for the formation of e.tyr-amp. three amino acid residues in the mobile loop, k230, k233, and t234, are known to be primarily responsible for these effects. we now analyze the network of interactions between these three amino acids using multiple mutant free energ ...19957711024
effects of signal peptide mutations on processing of bacillus stearothermophilus alpha-amylase in escherichia coli.bacillus stearothermophilus alpha-amylase has a signal peptide typical for proteins exported by gram-positive bacteria. there is only one signal peptidase processing site when the protein is exported from the original host, but when it is exported by escherichia coli, two alternative sites are utilized. site-directed mutagenesis was used to study the processing in e. coli. processing sites for 13 b. stearothermophilus alpha-amylases carrying mutations in their signal peptide were determined. pro ...19957711904
a ribosomal protein module in ef-g and dna gyrase.a novel common fold observed in the structures of elongation factor g, dna gyrase b, and ribosomal protein s5 displays a rare topological feature suggesting the high probability of an evolutionary relationship.19957719848
studies on thermophile products. xi. biological effect of antigen presenting inhibitor, isofatty acid-containing phosphatidylethanolamine, on mouse macrophages.a new fraction, fr. 8-a, which consists of a phosphatidylethanolamine with c14:0-c18:0 isofatty acids was obtained from bacillus stearothermophilus ubt8038. the fraction inhibited major histocompatibility complex class ii (ia) antigen expression and antigen presentation on mouse macrophages. the effect of fr.8-a on macrophage functions related to antigen presentation was investigated. fr. 8-a increased arachidonate release, prostaglandin (pg) e2 release and nitrite production from peritoneal mac ...19947735194
thermophilic bacilli have split cytochrome b genes for cytochrome b6 and subunit iv. first cloning of cytochrome b from a gram-positive bacterium (bacillus stearothermophilus).the genes of bacillus stearothermophilus k1041 encoding cytochrome b(6) (bacillus cytochrome b is referred to as cytochrome b(6) for its resemblance to plastid b6) and subunit iv of the quinol:cytochrome c oxidoreductase (bc1 complex) were cloned and sequenced. for preparation of the probe for cloning, polymerase chain reaction was carried out using oligonucleotide mixtures targeting for n-terminal regions of cytochrome bc and subunit iv of the thermophilic bacillus ps3. the deduced amino acid s ...19957737998
tryptophanyl-trna synthetase crystal structure reveals an unexpected homology to tyrosyl-trna synthetase.tryptophanyl-trna synthetase (trprs) catalyzes activation of tryptophan by atp and transfer to trna(trp), ensuring translation of the genetic code for tryptophan. interest focuses on mechanisms for specific recognition of both amino acid and trna substrates.19957743129
characterization of the bacillus stearothermophilus br219 phenol hydroxylase gene.the catabolic genes phea and pheb, coding for the conversion of phenol to catechol and catechol to 2-hydroxymuconic semialdehyde, respectively, have been cloned from bacillus stearothermophilus br219 into escherichia coli. following its localization on the 11-kb b. stearothermophilus dna insert by deletion and expression analysis, the phenol hydroxylase gene phea was subcloned as a 2-kb hindiii fragment, whose transformant expressed the enzyme after phenol induction and even more strongly after ...19957747948
the effect of different water-insoluble anorganic salts on the resistance and storage time of bacillus stearothermophilus spores used for biological indicators.the survival of bacillus stearothermophilus spores was investigated over 7 years. the spores were precipitated with 18 insoluble inorganic salts. there were hydroxides, carbonates, oxalates, phosphates, and sulfate of aluminium, barium, calcium, iron, magnesium, manganese, and tin. the stability of the spores to dry and moist heat was strongest in precipitates of barium and calcium salts. most phosphates and the heavy metals caused a rapid inactivation of spores. finally, the survival of the spo ...19947748440
comparative inhibition patterns of adenylate kinases from mammals, bird, fish and microorganisms.the s8 inhibitions of aks from six different sources were studied in mammals, birds, fish, and a microorganism. all aks tested were inhibited by s8. except for carp, all inhibited aks from those tested were reactivated by dtt. inhibitions of aks by other hydrophobic inhibitors, nem, butanol and ethanol were also studied. the inhibitions by s8 suggest that the hydrophobic pockets in the aks cover a wide phylogenetic range. all inhibitions by s8 are reactivated by dtt. unlike the inhibitions by s8 ...19947749617
efficacy of sterilization of endodontic files after autoclaving in a synthetic sponge.a common way of sterilizing endodontic files for clinical use is to insert them into synthetic sponges. the files are sterilized in the sponge, and the sponge is then used on the patient tray for ease of file retrieval. the ability to sterilize the files in a sponge has been questioned. the purpose of the present investigation was to evaluate the sterility of files and spore strips following autoclaving in a sponge. commercial spore strips and contaminated endodontic files were inserted into spo ...19947751068
[the chemiklaven 7000/8000 on the test bench].sterilization of metal instruments in chemiclaves is undoubtedly the most protective mode of sterilization, because corrosion and formation of spots is minimal. in the past sterilization with chemiclaves was criticised, because of the emission of formaldehyde by older models and the questionable efficacy of formaldehyde sterilization for wrapped instruments. in the present investigation the capability of the newest chemiclaves (7000/8000) to sterilize dental instruments was investigated. to moni ...19957754333
effect of rubber stopper composition, preservative pretreatment and rinse water temperature on the moist heat resistance of bacillus stearothermophilus atcc 12980.bacillus stearothermophilus spores (liquid suspension) were inoculated onto rubber stoppers and exposed to sublethal steam sterilization cycles at 120 degrees c. the d-values were determined using the fraction-negative method. an increase in heat resistance (d-value) of 200%-400% was observed when the spore suspension was inoculated onto rubber stoppers. the d-values ranged from 4.90-6.96 minutes 120 degrees c. no significant effect was seen when different preservatives were added to the stopper ...19957757456
sixteen years of experience with sterilization monitoring.sterilization in the dental office should be monitored to ascertain proper sterilizer function. biologic monitoring with calibrated preparations of bacterial spores is the preferred, as well as the only method that actually measures sterilization. a dental school-based sterilization monitoring service for dental practices was established in 1978 at the university of detroit. this service has grown from 20 participating dental offices to more than 1,500. in 1993, 18,137 biologic monitoring tests ...19947758029
enzymatic synthesis of a novel trisaccharide, glucosyl lactoside.cyclomaltodextrin glucanotransferase from bacillus stearothermophilus produced a series of oligosaccharides by the transglycosylation reaction with cyclomaltohexaose as a glycosyl donor and d-lactose as its acceptor. the content of oligosaccharide a as the main transfer product was 22.1% of the total sugar. the content was increased to 34.1% by hydrolysis with glucoamylase. oligosaccharide a was isolated by column chromatography and crystallized. by chemical and enzymatic analyses, oligosacchari ...19937763423
thermolabile alanine racemase from a psychotroph, pseudomonas fluorescens: purification and properties.a psychotrophic bacterium that produces a thermolabile alanine racemase was isolated from raw milk, and identified as pseudomonas fluorescens tm5-2. the enzyme was purified to homogeneity from the cell extract, and characterized to be compared with enzymes from mesophiles (bacillus subtilis and salmonella typhimurium) and a thermophile (bacillus stearothermophilus). the enzyme has a molecular weight of about 76,000 and consists of two subunits identical in molecular weight (38,000). the enzyme c ...19937763424
pan award. microbial diversity as a source of useful biopolymers. 19937763670
electrochemical bioreactor with immobilized glucose-6-phosphate dehydrogenase on the rotating graphite disc electrode modified with phenazine methosulfate.physical adsorption, covalent binding through the carbodiimide reaction between the surface carboxyl group and the amino group of the protein, and the crosslinking method with bovine serum albumin by glutaraldehyde were applied for the immobilization of glucose-6-phosphate dehydrogenase (g6pdh) on a graphite electrode. among those, the crosslinking method was employed for its highest apparent enzyme activity per unit surface area. phenazine methosulfate (pms), as a mediator for the electrochemic ...19937763682
a bacillus stearothermophilus esterase produced by a recombinant bacillus brevis stabilized by sulfhydryl compounds. 19937763782
evaluation of column flotation in the downstream processing of fermentation products: recovery of a genetically engineered alpha-amylase.flotation is a simple, inexpensive, and versatile unit operation with a largely unexplored potential in biotechnology. there is a general lack of research concerning biotechnological applications in this area, especially in the recovery of fermentation products. moreover, the few reports in the literature do not consider the modern concept of column flotation as practiced in the mineral industry. we report herein the application of column flotation for the recovery of a bacillus stearothermophil ...19937763908
effects of moranoline, 4-o-alpha-d-glucopyranosylmoranoline and their n-substituted derivatives on thermostability of cyclodextrin glycosyltransferase, glucoamylase, and beta-amylase.in repeated glycosylmoranolines synthetic reaction at 55 degrees c, cyclodextrin glycosyltransferase (cgt-ase, ec 2.4.1.19) from bacillus stearothermophilus retained its activity for more than 600 days. a main stabilizing compound was found to be 4-o-alpha-d-glucopyranosylmoranoline. the thermostabilizing activities of moranoline, 4-o-alpha-d-glucopyranosylmoranoline, and their n-substituted derivatives were studied. moranoline and its n-substituted derivatives stabilized glucoamylase. 4-o-alpha ...19937764015
efficient production of bacillus stearothermophilus alpha-amylase in bacillus brevis by altering its signal peptide.to investigate the role of signal peptides in extracellular production in bacillus brevis, the bacillus stearothermophilus alpha-amylase signal peptide was systematically altered and the effects were analyzed in b. brevis. efficient extracellular production of the amylase in b. brevis was accomplished either by introducing point mutations at positions between -6 and -4 or by replacing the whole signal peptide with that of b. brevis middle wall protein.19937764020
thermostable mutants of kanamycin nucleotidyltransferase are also more stable to proteinase k, urea, detergents, and water-miscible organic solvents.a series of variants of kanamycin nucleotidyltransferase (kntase), isolated previously on the basis of enhanced thermostability by cloning and selection for enzymatic activity in the thermophile bacillus stearothermophilus, was used to systematically test the hypothesis that thermostable enzymes would also be more resistant to other forms of protein denaturation. the purified kntases were treated with proteinase k or assayed at 37 degrees c in the presence of urea, n-lauroylsarcosine, triton x-1 ...19937764052
molecular cloning and sequencing of the gene for a thermostable n-carbamyl-l-amino acid amidohydrolase from bacillus stearothermophilus strain ns1122a.the gene for n-carbamyl-l-amino acid amidohydrolase was cloned from bacillus stearothermophilus strain ns1122a into e. coli. this gene started with a ttg triplet and was predicted to encode a peptide of 409 amino acids, with a calculated molecular weight of 44,248. the deduced amino acid sequence shared moderate homology with that of the corresponding enzyme of pseudomonas sp. strain ns671.19937764340
role of cysteine residues in esterase from bacillus stearothermophilus and increasing its thermostability by the replacement of cysteines.bacillus stearothermophilus esterase contains two free cysteine residues at positions of 45 and 115, which react with sulfhydryl reagents resulting in a significant decrease in the enzymatic activity. to understand the role of the cysteine residues in catalytic regions of the esterase, the residues were replaced with serine or alanine by site-directed mutagenesis to construct four single-mutated enzymes (c45a, c45s, c115a, c115s) and two double-mutated ones (c45/115a and c45/115s). wild-type and ...19947764425
engineering surface loops of proteins--a preferred strategy for obtaining new enzyme function.a prerequisite for the rational redesign of enzymes is that altering amino acids in an attempt to obtain new biological function does not unexpectedly alter the globular, natural framework of the native protein on which the design is being executed. the results of combinatorial-mutagenesis strategies suggest that random variation of amino acid sequence is most easily tolerated at the solvent-exposed surfaces of a protein. this review analyses effective redesigns of bacillus stearothermophilus la ...19947764905
cloning and expression of a pathway for benzene and toluene from bacillus stearothermophilus.bacillus stearothermophilus strain br325 demonstrating broad aromatic substrate capability was isolated from petroleum-contaminated soil. the chromosomally-located aromatic pathway from this isolate was cloned into escherichia coli as a 32 kb insert in cosmid phc79, conferring growth on benzene, phenol, and toluene as sole carbon sources.19947765116
a thermostable hydantoinase of bacillus stearothermophilus ns1122a: cloning, sequencing, and high expression of the enzyme gene, and some properties of the expressed enzyme.a dna fragment containing the gene for a thermostable hydantoinase was cloned from a thermophile, bacillus stearothermophilus ns1122a in escherichia coli. nucleotide sequencing showed that the dna fragment contains one open reading frame, which is predicted to encode a peptide of 471 amino acids, with a calculated molecular weight of 51,724. when the hydantoinase gene was under the control of both the lpp promoter and the lac promoter-operator, and its expression was induced by isopropyl-1-thio- ...19947765480
sterilization and containment. 19957765643
aerobic thermophilic treatment of sewage sludge at pilot plant scale. 1. operating conditions.the aerobic thermophilic treatment process of sewage sludge was studied at different bioreactor scales in a pilot plant installation. since, for a satisfactory sludge disinfection, the swiss legislation requires minimal incubation times of all volume elements, the bioreactors were operated in repetitive batch mode (draw and fill). different retention times and frequencies of the volume changes were applied in order to prove the capability of the particular operation modes in assuring high degrad ...19957765808
cloning of the gene encoding dna binding protein hu from bacillus stearothermophilus and its expression in escherichia coli.the gene (hbst) encoding the dna binding protein hu from bacillus stearothermophilus was cloned, with the bacillus subtilis hu gene (hbsu) as a hybridization probe. the nucleotide sequence, which contains a ribosome binding site, a transcriptional termination signal, as well as the coding region, was analyzed by the dideoxy chain-termination method. the deduced amino acid sequence of an open reading frame was perfectly matched with that of b. stearothermophilus hu (bsthu) determined by the prote ...19957765961
role of residue 161 in the allosteric transitions of two bacterial phosphofructokinases.the loop between alpha-helix 6 and beta-strand f of the phosphofructokinase (pfk) from bacillus stearothermophilus is proposed to be important in the allosteric transition of the enzyme [schirmer, t., & evans, p.r. (1990) nature 343, 140-145]. except for residue 161, the amino acids within the loop are similar between b. stearothermophilus pfk (bspfk) and the pfk from escherichia coli (ecpfk). in the former enzyme, residue 161 is a glutamate, while in the latter it is a glutamine. we have used s ...19957766616
steam sterilization of laparoscopic instruments.because of the intricate internal parts of laparoscopic instruments, questions have been raised about the efficacy of cleaning and sterilization techniques. to assess these risks, hamburger meat was inoculated with high concentrations of vegetative pathogens and packed into laparoscopic cannulas. all openings of the cannulas were sealed during steam sterilization cycles ranging from 3 to 10 min in different experiments; cultures were obtained after cooling. experiments were then performed using ...19957773462
stabilization of a ribosomal rna tertiary structure by ribosomal protein l11.interactions between ribosomal protein l11 and a domain of large subunit rrna have been highly conserved and are essential for efficient protein synthesis. to study the effects of l11 on rrna folding, a homolog of the escherichia coli l11 gene has been amplified from bacillus stearothermophilus dna and cloned into a phage t7 polymerase-based expression system. the expressed protein is 93% homologous to the l11 homolog from bacillus subtilis, denatures at temperatures above 72 degrees c, and has ...19957783196
correction of the beta-mannanase domain of the celc pseudogene from caldocellulosiruptor saccharolyticus and activity of the gene product on kraft pulp.the cela, mana, and celb genes from caldocellulosiruptor saccharolyticus compose a cellulase-hemicellulase gene cluster and are arranged on a 12-kb c. saccharolyticus genomic fragment of the recombinant lambda bacteriophage nzp lambda 2. the beginning of a fourth open reading frame (celc) which was homologous to the c. saccharolyticus mana and cela genes was located at the 3' end of the 12-kb nzp lambda 2 genomic fragment. genome-walking pcr was used to isolate dna fragments downstream of the c. ...19957793947
determination of peptide regions exposed at the surface of the bacterial ribosome with antibodies against synthetic peptides.we synthesized six peptides corresponding to regions that are predicted to be surface-exposed of the following ribosomal proteins: protein l2, positions (d263-k272); protein l5, positions (i136-g150); protein l25, positions (q75-d90); protein s3, positions (q222-k232) derived from escherichia coli; and protein l2, positions (k257-k275), and protein s3, positions (r130-t150) from bacillus stearothermophilus. these peptides were employed to raise ribosomal protein-cross-reactive antibodies. the an ...19957794529
preliminary report: comparative evaluation of the effectiveness of gas sterilizers. 19957795554
macromolecular recognition through electrostatic repulsion.in the process of genetic translation, each aminoacyl-trna synthetase specifically aminoacylates its cognate trnas and rejects the 19 other species of trnas. a decrease in the specificity of this reaction can result in misincorporations of amino acids into proteins and be deleterious to the cell. in the case of tyrosyl-trna synthetase from bacillus stearothermophilus, the change of residue glu152 into ala results in erroneous interactions with non-cognate trnas. to analyse how glu152 contributes ...19957796819
role of the conserved glycyl residues located at the active site of leucine dehydrogenase from bacillus stearothermophilus.a tetrapeptide sequence, gly-gly-(gly/ala)-lys, containing a catalytically important lysyl residue, is highly conserved in nad(p)+-dependent amino acid dehydrogenases. to elucidate functional roles of the glycyl residues in this conserved sequence gly-77, gly-78, and gly-79 of the recombinant leucine dehydrogenase from bacillus stearothermophilus have been individually replaced with ala by site-directed mutagenesis. all of the mutant enzymes had michaelis constants for alpha-keto-iso-caproate an ...19947798175
over-expression of membrane-bound cytochrome c-551 from thermophilic bacillus ps3 in bacillus stearothermophilus k1041.cytochrome c-551 is a lipoprotein of about 10500 da, found in thermophilic bacillus ps3 grown under air-limited conditions. an expression vector was constructed from a structural gene of ps3 cytochrome c-551, synthetic oligonucleotide as a promoter for bacillus stearothermophilus and a shuttle vector for escherichia coli and b. stearothermophilus. the transformed cells of b. stearothermophilus k1041 expressed cytochrome c-551 as much as 5 nmol/mg membrane protein. the effects of over-expression ...19947803447
studies on thermophile products. ix. isofatty acid-containing phosphatidylglycerol that enhances the induction of concanavalin a-activated suppressor t cells.a new enhancer of the induction of concanavalin a (con a)-activated suppressor t (ts) cells has been demonstrated in the ethanolysate of bacillus stearothermophilus ubt8038. it was purified by successive silica gel column chromatographies and identified as phosphatidylglycerol with c14:0-c18:0 isofatty acids (fr. 7-c). mouse splenocytes activated with con a and fr. 7-c (0.01-1 microgram/ml) in vitro significantly suppressed the proliferative response of syngenic splenocytes by mitogen stimulatio ...19947841936
c-terminal truncations of a thermostable bacillus stearothermophilus alpha-amylase.a series of truncated proteins from a thermostable bacillus stearothermophilus alpha-amylase was prepared to study the importance of the extension in the c-terminus compared with other liquefying bacillus alpha-amylases. the mutations introducing new translation termination sites shortened the 515 amino acid residue-long wild type enzyme by 17, 32, 47, 73 or 93 residues. the longer the truncation, the lower the specific activity of the enzyme. only the two longest mutant proteins were active: th ...19947855141
thermostable farnesyl diphosphate synthase of bacillus stearothermophilus: crystallization and site-directed mutagenesis.the gene for thermostable farnesyl diphosphate synthase from bacillus stearothermophilus was cloned, sequenced, and overexpressed in escherichia coli. the synthase was purified to homogeneity and crystallized. the enzyme carried only two cysteine residues in contrast to its counterparts from other sources, which have four to six cysteine residues. either or both of the cysteine residues can be replaced with serine without causing a loss of the catalytic activity. the conserved arginine residue t ...19947856399
improvement of thermal stability of subtilisin j by changing the primary autolysis site.the thermostability of subtilisin j, an extracellular serine protease secreted from bacillus stearothermophilus, has been improved by changing the primary autolysis site of the asp-49 mutant protein. previously we have shown that the asp-49 mutant protein has proteolytic activity, but so unstable that it was primarily autolyzed in tyr-58-gln-59 peptide bond during cultivation (jang et al. biochim. biophys. acta. 1162, 233-235 1993). in the present study, to mitigate the autolytic degradation and ...19957857265
solvent isotope effects and the nature of electrophilic catalysis in the action of the lactate dehydrogenase of bacillus stearothermophilus.deuterium oxide at atom fractions of deuterium from 0.0 to 0.97 has an effect of less than 20% on the kinetic term kcat/kmb (believed to reflect the transition state for the hydride-transfer step) for the reduction of pyruvic acid by nadh at 55 degrees c, with catalysis by the tetrameric form of the lactate dehydrogenase of bacillus stearothermophilus. this observation suggests that the hydride-transfer event is not assisted by protonic bridging to the carbonyl group being reduced. the results a ...19947858977
new shuttle vector for cloning in bacillus stearothermophilus.cloning vector plasmid prp9 was constructed on the basis of the broad host-range plasmid plm6. prp9 was a small plasmid (2.9 kb), possessed a convenient polyrestriction site sequence and efficiently transformed bacillus subtilis, bacillus stearothermophilus and escherichia coli. furthermore, prp9 presented a very high segregational stability in bacillus hosts. also, the structural stability in bacillus strains, grown under selective pressure, of prp9 carrying a 3-kb fragment, was high. no single ...19947871236
role of glycine 212 in the allosteric behavior of phosphofructokinase from bacillus stearothermophilus.crystallographic studies indicate that the loop between alpha-helix 8 and beta-strand h (the 8h loop) which borders the effector site of bacillus stearothermophilus phosphofructokinase (bspfk) is involved in the allosteric mechanism of the enzyme [schirmer, t., and evans, p.r. (1990) nature 343, 140-145]. the residue at one end of this loop, glycine 212, has been proposed to be a pivot about which the loop hinges. using site-directed mutagenesis, glycine 212 was replaced with valine (g212v). ste ...19957873536
a chimeric bacterial phosphofructokinase exhibits cooperativity in the absence of heterotropic regulation.the phosphofructokinases (pfks) from the bacteria escherichia coli and bacillus stearothermophilus differ markedly in their regulation by atp. whereas e. coli pfk (ecpfk) is profoundly inhibited by atp, b. stearothermophilus pfk (bspfk) is only slightly inhibited. the structural basis for this difference could be closure of the active site via a conformational transition that occurs in the atp-binding domain of ecpfk, but is absent in bspfk. to investigate the role of this transition in atp inhi ...19957876126
construction and characterization of chimeric enzyme consisting of an amino-terminal domain of phenylalanine dehydrogenase and a carboxy-terminal domain of leucine dehydrogenase.phenylalanine dehydrogenase of thermoactinomyces intermedius acts preferentially on l-phenylalanine and l-tyrosine, whereas leucine dehydrogenase of bacillus stearothermophilus acts almost exclusively on l-leucine and some other branched-chain l-amino acids. the two enzymes share a sequence similarity (47%). aiming at elucidation of the mechanism of substrate recognition by the two amino acid dehydrogenases, we have genetically constructed a chimeric enzyme consisting of an n-terminal domain of ...19947883771
microbiologic evaluation of a hydrogen peroxide sterilization system.the reliability of chemical sterilizers (acetone and/or 30-percent hydrogen peroxide at 25 degrees c and at 60 degrees c) was tested against bacillus subtilis inoculated onto glass slides, commercial biological indicator discs (bacillus stearothermophilus and b. subtilis), and b. subtilis spore survival. acetone alone was not sporicidal. hydrogen-peroxide-sterilized glass slides were sterile after 5 minutes. the indicator discs required 25 minutes at 25 degrees c, and less than 3 minutes at 60 d ...19947898862
affinity of chaperonin-60 for a protein substrate and its modulation by nucleotides and chaperonin-10.the refolding of lactate dehydrogenase fully unfolded in 4 m guanidinium chloride was initiated by dilution into assay buffer, and the emergence of active enzyme was recorded. this was performed in the presence of the following chaperonin complexes in the refolding medium: chaperonin-60 (cpn60), cpn60-mgatp, cpn60-mgp[nh]ppa, cpn60-mgadp in both the presence and absence of chaperonin-10 (cpn10). for each nucleotide-chaperonin complex studied, the effect of nucleotide concentration was measured. ...19947912068
construction of his6-tagging vectors allowing single-step purification of groes and other polypeptides produced in bacillus subtilis.two plasmid expression vectors for bacillus subtilis have been constructed that direct the synthesis of fusion proteins containing a stretch of six histidine residues (his6) at either the n or c terminus. the his6 tag allows the rapid enrichment of proteins by metal chelate affinity chromatography in a denatured or native state. as an example of the general utility of one of these expression vectors, we produced the groes protein encoded by the groesl operon of b. stearothermophilus.19947916313
structural and functional roles of the cysteine residues of bacillus stearothermophilus farnesyl diphosphate synthase.p-(chloromercuri)benzoic acid inhibited the catalytic activity of bacillus stearothermophilus farnesyl diphosphate synthase (fpp synthase), which contains only two cysteine residues at positions 73 and 289. in order to explore the role of the cysteine residues, either or both of them were replaced with phenylalanine or serine. five mutant enzymes, c73f, c73s, c289f, c289s, and c73s-c289s, were overproduced in escherichia coli and purified to homogeneity. all of them were active as farnesyl dipho ...19947918490
feasibility of a combined carrier test for disinfectants: studies with a mixture of five types of microorganisms.there is mounting concern regarding the efficacy of many germicides on the market because officially recognized germicidal tests for various classes of microorganisms vary widely and often lack reproducibility and proper quantitation. we report here a carrier method for simultaneously and quantitatively assessing the efficacy of liquid chemical germicides against a mixture of microorganisms of varying degrees of resistance.19947943926
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