Publications

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[etiology of acute enteric infection in children with arid zone and effect of probiotics].to study etiologic structure of acute enteric infections (aei) with isolation of hemolytic and enteropathogenic escherichia and to assess the efficacy of probiotic therapy during infections caused by e. coli.200919623719
[rapid detection of salmonella in food by using fluorescently labeled phage o-i].to develop a rapid detection method for salmonella in food by using specific salmonella-phage o-i.200919623962
an integrative approach combining noncovalent mass spectrometry, enzyme kinetics and x-ray crystallography to decipher tgt protein-protein and protein-rna interaction.the trna-modifying enzyme trna-guanine transglycosylase (tgt) is a putative target for new selective antibiotics against shigella bacteria. the formation of a tgt homodimer was suggested on the basis of several crystal structures of tgt in complex with rna. in the present study, noncovalent mass spectrometry was used (i) to confirm the dimeric oligomerization state of tgt in solution and (ii) to evidence the binding stoichiometry of the complex formed between tgt and its full-length substrate tr ...200919627989
enterohaemorrhagic escherichia coli serogroup o111 inhibits nf-(kappa)b-dependent innate responses in a manner independent of a type iii secreted ospg orthologue.enterohaemorrhagic and enteropathogenic escherichia coli (ehec and epec) inject a repertoire of effector proteins into host cells via a type iii secretion system (t3ss) encoded by the locus of enterocyte effacement (lee). ospg is an effector protein initially identified in shigella that was shown to inhibit the host innate immune response. in this study, we found ospg homologues in ehec (mainly of serogroup o111) and in yersinia enterocolitica. the t3ss encoded by the lee was able to inject thes ...200919628559
differentiation of whole bacterial cells based on high-throughput microarray chip printing and infrared microspectroscopic readout.using robotic automation, a microarray printing protocol for whole bacterial cells was developed for subsequent label-free and nondestructive infrared microspectroscopic detection. using this contact microspotting system, 24 microorganisms were printed on zinc selenide slides; these were 6 species of listeria, 10 species of vibrio, 2 strains of photobacterium damselae, yersinia enterocolitica 289, bacillus cereus atcc 14529, staphylococcus aureus, atcc 19075 (serotype 104 b), shigella sonnei 201 ...200919630511
[development of single base extension-tags microarray for the detection of food-borne pathogens].we developed single base extension-tags (sbe-tags) microarray to detect eight common food-borne pathogens, including staphylococcus aureus, vibrio parahaemolyticus, listeria monocytogenes, salmonella, enterobacter sakazaki, shigella, escherichia coli o157:h7 and campylobacter jejuni. with specific pcr primers identified and integrated for eight food-borne pathogens, target sequences were amplified and purified as template dna of single base extension-tags reaction. the products were hybridized t ...200919637631
vaccination of children in low-resource countries against shigella is unlikely to present an undue risk of reactive arthritis.shigellosis is a major cause of morbidity and mortality among children in low-resource countries. promising vaccine strategies in development include genetically attenuated shigella, killed whole cell vaccines, subcellular vaccines, and o-polysaccharide-protein conjugates. there is a concern that shigella vaccines could either induce reactive arthritis or could prime vaccinees for arthritis after a subsequent exposure to the pathogen because shigellosis is associated with reactive arthritis, esp ...200919643213
genetics and virulence association of the shigella flexneri sit iron transport system.the sit-encoded iron transport system is present within pathogenicity islands in all shigella spp. and some pathogenic escherichia coli strains. the islands contain numerous insertion elements and sequences with homology to bacteriophage genes. the shigella flexneri sit genes can be lost as a result of deletion within the island. the formation of deletions was dependent upon reca and occurred at relatively high frequency. this suggests that the sit region is inherently unstable, yet sit genes ar ...200919289511
acute non-outbreak shigellosis: ten years experience in southern taiwan.we conducted a retrospective study of both the clinical and laboratory characteristics of shigellosis in southern taiwan.200919292940
the changing panorama of bacterial enteric infections.we studied the age-specific population-based incidence of bacterial enteric infections caused by shigella, salmonella and campylobacter, in jerusalem. during 1990-2008, 32,408 cases were reported (incidence rate 232.1/100,000 per annum). the patterns of shigella (47.4% of cases), salmonella (34.4%) and campylobacter (18.2%) infections evolved noticeably. campylobacter rates increased from 15.0 to 110.8/100,000 per annum. salmonella rates increased from 74.2 to 199.6/100,000 in 1995 then decrease ...200919296872
characterization of fluoroquinolone-resistant shigella flexneri in hangzhou area of china.the aim of this study was to characterize fluoroquinolone-resistant shigella and determine whether the qnr and aac(6')-ib-cr genes could contribute to sporadic shigellosis at the clinic in the hangzhou area of china.200919297378
serodiversity and antimicrobial resistance pattern of shigella isolates at gondar university teaching hospital, northwest ethiopia.the aims of this study were to determine the distribution of serogroups and serotypes as well as the antimicrobial resistance pattern of shigella isolates from gondar patients with acute diarrhea. a cross-sectional study was conducted from august 2006 to february 2008. stool specimens were received from study subjects and cultured. isolates were confirmed by biochemical and serological tests. the isolates were tested for antimicrobial susceptibility by the disc diffusion method. of the 1,200 sto ...200919305047
green banana reduces clinical severity of childhood shigellosis: a double-blind, randomized, controlled clinical trial.mature green banana (gb) fruit is rich in amylase-resistant starch that stimulates colonic production of short-chain fatty acids (referred to as fatty acid) and is useful in treating diarrheal diseases. we studied therapeutic effects of gb in childhood shigellosis by determining colonic fatty acid production in a double-blind, randomized, controlled, clinical trial.200919319017
structure and heme binding properties of escherichia coli o157:h7 chux.for many pathogenic microorganisms, iron acquisition from host heme sources stimulates growth, multiplication, ultimately enabling successful survival and colonization. in gram-negative escherichia coli o157:h7, shigella dysenteriae and yersinia enterocolitica the genes encoded within the heme utilization operon enable the effective uptake and utilization of heme as an iron source. while the complement of proteins responsible for heme internalization has been determined in these organisms, the f ...200919319934
surveillance of antibiotic susceptibility patterns among shigella sonnei strains isolated in belgium during the 18-year period 1990 to 2007.this study was conducted to determine the frequency and pattern of antimicrobial susceptibility of shigella sonnei, the predominant species causing shigellosis in belgium. between 1990 and 2007, a total of 7,307 strains, mainly (98.2%) isolated from stools, were diagnosed by peripheral laboratories before being confirmed as shigella strains by serotyping by the national reference center of salmonella and shigella. a significant increase in resistances to tetracycline, streptomycin, trimethoprim, ...200919321731
comparative study of pathogenicity tests for shigella spp. and enteroinvasive escherichia coli strains.the purpose of this study was to optimize an in vitro pathogenicity model, as an alternative to sereny test (on guinea pigs). the study was performed on 13 shigella spp. and 3 enteroinvasive escherichia coli (eiec) strains isolated in romania between 2005 and 2007. the investigation implied the comparative evaluation between the sereny test and cravioto's adapted method for the assessment of the adherence and invasion capacity of the studied bacterial strains on hela cells, as well as the pcr de ...200919507627
[norovirus infection in general hospitals for adults].to determine the role of noroviruses in the rise of hospital outbreaks of acute intestinal infections (aii), to study clinical and epidemiological aspects of hospital noroviral infection.200919514424
pulsed-field gel electrophoresis for molecular epidemiology of food pathogens.foodborne diseases due to well-recognized pathogens have emerged as an important and growing public health problem with a significant impact on health. molecular methods for subtyping these microorganisms have become a valid adjunct to the traditional techniques employed in most laboratories. one such molecular technique for the detection and identification of food pathogens is pulsed-field gel electrophoresis (pfge). this method separates large dna molecules by the use of an alternating electri ...200919521867
bacterial type iii effectors inhibit cell lifting by targeting integrin-linked kinase.many pathogenic bacteria are able to surmount exfoliation and colonize the host epithelium efficiently. in a recent article in nature, kim et al. (2009) show that shigella flexneri ospe, a conserved type iii effector, reinforces host cell adherence and prevents detachment of the infected cells by interacting with integrin-linked kinase.200919527878
sarcosaprophagous flies in suez governorate, egypt iv--persistence of human pathogenic bacteria in the developmental stages.the persistence of three species of human pathogenic bacteria (escherichia coli, shigella sonnei and staphylococcus epidermidis) in sterile artificially fed larvae was examined till adult emergence after ingestion by three species of sarcosaprophagous flies (house fly, musca domestica, oriental latrine blow fly, chrysomya megacephala and australian cheep blow fly, lucilia cuprina). the number of bacteria present in mature maggots, pupae and emerging adults declined significantly (p < 0.05). each ...200919530618
bulging fontanelle in febrile infants: is lumbar puncture mandatory?to determine the aetiologies and clinical characteristics of infants with fever and a bulging fontanelle.200919531528
[multiplex pcr assay for dissemination and diversity of extended-spectrum beta-lactamase genes in shigella isolates].to develop a rapid and simple multiplex polymerase chain reaction (pcr) method which discriminates extended-spectrum beta-lactamases (esbls) genes in sporadic shigella isolates from 1998 to 2007 in hangzhou city, china.200919534925
antimicrobial activity of the methanolic extract and compounds from morus mesozygia stem bark.this study was aimed at investigating the antimicrobial activity of the methanolic extract (mmb) and compounds isolated from the stem bark of morus mesozygia, namely 3beta-acetoxyurs-12-en-11-one (1), moracin q (2), moracin t (3), artocarpesin (4), cycloartocarpesin (5), moracin r (6), moracin u (8), moracin c (9), and moracin m (10).200919450674
diagnosis and treatment of acute or persistent diarrhea.studies of microbial pathogens and the toxins they produce are important for determining the mechanisms by which they cause disease and spread throughout a population. some bacteria produce secretory enterotoxins (such as cholera toxin or the heat-labile or stable enterotoxins produced by escherichia coli) that invade cells directly. others invade cells or produce cytotoxins (such as those produced by shigella, enteroinvasive e coli, or clostridium difficile) that damage cells or trigger host re ...200919457416
molecular typing methodologies for microbial source tracking and epidemiological investigations of gram-negative bacterial foodborne pathogens.gram-negative bacterial foodborne pathogens are a worldwide cause of morbidity and mortality. the ability to carry out epidemiological investigations to determine the primary sources of bacterial contamination is important to improve public health. multiple methods are available for bacterial source tracking and to determine the distribution of pathogens isolated from sick patients. the molecular based typing methods available fall into three general categories: those based on restriction analys ...200919460308
metabolic control through ornithine and uracil of epithelial cell invasion by shigella flexneri.this paper shows that compounds in defined growth media strongly influence the expression of the effectors of virulence in the human invasive pathogen shigella flexneri. ornithine in conjunction with uracil reduces the haemolytic ability of wild-type cultures more than 20-fold and the expression of the type iii secretion system more than 8-fold, as monitored by an mxic : : lacz transcriptional reporter. mxic gene expression is further decreased by the presence of methionine or branched-chain ami ...200919460819
design, synthesis, and immunochemical characterization of a chimeric glycopeptide corresponding to the shigella flexneri y o-polysaccharide and its peptide mimic mdwnmhaa.two glycopeptide chimeras corresponding to the shigella flexneri y o-polysaccharide and its peptide mimic were designed in an attempt to improve the binding affinity by increasing the entropy of binding relative to the original octapeptide mimic of the o-polysaccharide. the design was based on the x-ray crystal structures of a monoclonal antibody sya/j6 in complex with its cognate ligands, a pentasaccharide corresponding to the s. flexneri y o-polysaccharide and the octapeptide mimic, mdwnmhaa. ...200919467535
rapid detection of intestinal pathogens in fecal samples by an improved reverse dot blot method.to develop a new, rapid and accurate reverse dot blot (rdb) method for the detection of intestinal pathogens in fecal samples.200919469006
incidence of multiple antibiotic resistant gram-negative bacteria isolated from surface and underground water sources in south western region of nigeria.in most rural and urban settlements, particularly in nigeria, wells, spring, streams or rivers and lakes serves as major sources of water supply for drinking and other domestic purposes. unfortunately, many of the available water sources are not potable without some form of treatment which is seldom available in most settings. the use of untreated surface water sources for drinking and for domestic purposes remains a major threat to public health as these could serve as reservoirs the for transf ...200919474486
involvement of rna-binding protein hfq in the osmotic-response regulation of inve gene expression in shigella sonnei.the expression of type iii secretion system (ttss) in shigella is regulated in response to changes in environmental osmolarity and temperature. temperature-dependent regulation of virf, the master regulator of ttss synthesis, is believed to occur at the transcriptional level. we recently demonstrated, however, that ttss synthesis also involves post-transcriptional regulation of the synthesis of inve, a target of virf and key regulator of ttss synthesis. the mrna levels of inve (virb) are stable ...200919476612
ipab-ipgc interaction defines binding motif for type iii secretion translocator.the delivery of virulence factors into host cells through type iii secretion systems is essential for enterobacterial pathogenesis. molecular chaperones bind specifically to virulence factors in the bacterial cytosol before secretion. invasion plasmid gene c (ipgc) is a chaperone that binds 2 essential virulence factors of shigella: invasion plasmid antigens (ipa) b and c. here, we report the crystal structure of ipgc alone and in complex with the chaperone binding domain (cbd) of ipab. the chap ...200919478065
comparison of acute bloody and watery diarrhea: a case control study.the clinical and laboratory findings of 290 cases of bloody diarrhea who presented to the department of diarrhea training and treatment between june 1998 and may 2002 were investigated, and compared to those of two consecutive cases who had watery diarrhea. the bloody diarrhea group had higher mean age, higher frequencies of diarrhea, lower frequencies of vomiting, and shorter durations of diarrhea at the time of admission as compared to the watery diarrhea group. the number of cases using antib ...200919480324
laboratory-acquired infections.laboratory-acquired infections due to a wide variety of bacteria, viruses, fungi, and parasites have been described. although the precise risk of infection after an exposure remains poorly defined, surveys of laboratory-acquired infections suggest that brucella species, shigella species, salmonella species, mycobacterium tuberculosis, and neisseria meningitidis are the most common causes. infections due to the bloodborne pathogens (hepatitis b virus, hepatitis c virus, and human immunodeficiency ...200919480580
reactive arthritis: clinical aspects and medical management.reactive arthritis (rea) is an inflammatory arthritis that arises after certain gastrointestinal or genitourinary infections, representing a classic interplay between host and environment. it belongs to the group of arthritidies known as the spondyloarthropathies. the classic syndrome is a triad of symptoms, including the urethra, conjunctiva, and synovium; however, the majority of patients do not present with this triad. diagnostic criteria for rea exist, but data suggest new criteria are neede ...200919480995
analytical comparison of nine pcr primer sets designed to detect the presence of escherichia coli/shigella in water samples.the analytical performance of 9 different pcr primer sets designed to detect escherichia coli and shigella in water has been evaluated in terms of ubiquity, specificity, and analytical detection limit. of the 9 pcr primer sets tested, only 3 of the 5 primer sets targeting uida gene and the primer set targeting tuf gene amplified dna from all e. coli strains tested. however, of those 4 primer sets, only the primer set targeting the tuf gene also amplified dna from all shigella strains tested. for ...200919482328
protein interaction platforms: visualization of interacting proteins in yeast.here we describe the protein interaction platform assay, a method for identifying interacting proteins in saccharomyces cerevisiae. this assay relies on the reovirus scaffolding protein microns, which forms large focal inclusions in living cells. when a query protein is fused to microns and potential interaction partners are fused to a fluorescent reporter, interactors can be identified by screening for yeast that display fluorescent foci.200919483691
lack of antimicrobial activity by the antiretroviral drug nevirapine against common bacterial pathogens. 200919487448
bacteria hijack integrin-linked kinase to stabilize focal adhesions and block cell detachment.the rapid turnover and exfoliation of mucosal epithelial cells provides an innate defence system against bacterial infection. nevertheless, many pathogenic bacteria, including shigella, are able to surmount exfoliation and colonize the epithelium efficiently. here we show that the shigella flexneri effector ospe (consisting of ospe1 and ospe2 proteins), which is highly conserved among enteropathogenic escherichia coli, enterohaemorrhagic e. coli, citrobacter rodentium and salmonella strains, rei ...200919489119
role for the chlamydial type iii secretion apparatus in host cytokine expression.in many important human pathogens, such as shigella and salmonella spp., the bacterial type iii secretion (t3s) apparatus is required to initiate inflammation via activation of caspase-1- or nf-kappab-dependent genes. using an ex vivo infection model, the goal of the present study was to determine whether the chlamydial t3s apparatus also modulates the host inflammatory response. infections of mouse peritoneal macrophages were performed with chlamydia muridarum, and the expression of inflammator ...200918852236
reduction in infection risk through treatment of microbially contaminated surfaces with a novel, portable, saturated steam vapor disinfection system.surface-mediated infectious disease transmission is a major concern in various settings, including schools, hospitals, and food-processing facilities. chemical disinfectants are frequently used to reduce contamination, but many pose significant risks to humans, surfaces, and the environment, and all must be properly applied in strict accordance with label instructions to be effective. this study set out to determine the capability of a novel chemical-free, saturated steam vapor disinfection syst ...200918834748
quinolone-induced arthropathy: an update focusing on new mechanistic and clinical data.quinolones possess favourable antibacterial and pharmacokinetic characteristics and are often used as anti-infective agents in adults. they are contraindicated in children and adolescents because they damage weight-bearing joints in juvenile animals. in addition, they possess a tendotoxic potential. since ciprofloxacin has been used off-label for decades in children and adolescents, it is known today that no pronounced risks for arthropathies or tendinopathies exist in humans. recently published ...200918835137
design, synthesis, characterization and in vitro antimicrobial evaluation of 4,6-diaryl-4,5-dihydro-2-phenyl-2h-indazol-3-ols.new 4,6-diaryl-4,5-dihydro-2-phenyl-2h-indazol-3-ols 25-32 were designed, synthesized and in vitro microbially evaluated using clinically isolated bacterial strains viz staphylococcus aureus, beta-heamolytic streptococcus, vibreo cholerae, salmonella typhii, shigella felxneri and fungal strains viz aspergillus flavus, mucor, rhizopus and microsporum gypsuem. results of this study showed that the nature of the substituents on the phenyl rings viz., methyl, methoxy, chloro, nitro as well as the br ...200918825556
metal based isatin-derived sulfonamides: their synthesis, characterization, coordination behavior and biological activity.some isatin derived sulfonamides and their transition metal [co(ii), cu(ii), ni(ii), zn(ii)] complexes have been synthesized and characterized. the structure of synthesized compounds and their nature of bonding have been inferred on the basis of their physical (magnetic susceptibility and conductivity measurements), analytical (elemental analyses) and spectral (ir, (1)h nmr and (13)c nmr) properties. an octahedral geometry has been suggested for co(ii), ni(ii) and zn(ii) and square-planar for cu ...200918825557
design, synthesis and in vitro microbiological evaluation of 6,6-dimethyl-7,9-diaryl-1,2,4,8-tetraazaspiro[4.5]decan-3-thiones--a new series of 'tailor-made' compounds.some novel 'tailor-made' compounds, 6,6-dimethyl-7,9-diaryl-1,2,4,8-tetraazaspiro[4.5]decan-3-thiones 23-27 have been studied for their in vitro antibacterial activity against staphylococcus aureus, beta-heamolytic streptococcus, vibreo cholerae, salmonella typhii, shigella felxneri, escherichia coli, klebsiella pneumonia, pseudomonas aeruginosa and anti-fungal activity against aspergillus flavus, mucor, rhizopus and microsporum gypsuem. compounds 24 and 25 exerted potent antibacterial activity ...200918830884
acanthamoeba castellanii an environmental host for shigella dysenteriae and shigella sonnei.the interaction between shigella dysenteriae or shigella sonnei and acanthamoeba castellanii was studied by viable counts, gentamicin assay and electron microscopy. the result showed that shigella dysenteriae or shigella sonnei grew and survived in the presence of amoebae for more than 3 weeks. gentamicin assay showed that the shigella were viable inside the acanthamoeba castellanii which was confirmed by electron microscopy that showed the shigella localized in the cytoplasm of the acanthamoeba ...200918712360
nlrc4/ipaf: a card carrying member of the nlr family.the nod-like receptor (nlr) family of proteins is involved in the regulation of innate immune responses and cell death pathways. recent findings show that the nlr family member nlrc4 (also known as ipaf) has important roles in innate immune responses to gram-negative bacteria. macrophages infected with legionella pneumophila, salmonella typhimurium, shigella flexneri, or pseudomonas aeruginosa activate caspase-1 in an nlrc4-dependent manner leading to macrophage cell death and the release of pro ...200918819842
the in vitro anti-pathogenic activity of immunoglobulin concentrates extracted from ovine blood.an immunoglobulin-rich fraction has been prepared from ovine blood in our laboratory. we have investigated its antibacterial activity and binding activity to pathogenic whole cell antigens, lipopolysaccharide (lps) and staphylococcal enterotoxin b. ovine immunoglobulin concentrate (oic) comprised about 73 +/- 2% of igg and 11 +/- 1% of igm on a protein basis. it inhibited the growth of all 13 strains of pathogens tested, but the inhibitory activity varied according to bacterial strain. the inhib ...200918769875
guideline for the investigation and initial therapy of diarrhea-negative hemolytic uremic syndrome.this guideline for the investigation and initial treatment of atypical hemolytic uremic syndrome (hus) is intended to offer an approach based on opinion, as evidence is lacking. it builds on the current ability to identify the etiology of specific diagnostic sub-groups of hus. hus in children is mostly due to infection, enterohemorrhagic escherichia coli (ehec), shigella dysenteriae type 1 in some geographic regions, and invasive streptococcus pneumoniae. these sub-groups are relatively straight ...200918800230
inferring genomic flux in bacteria.acquisition and loss of genetic material are essential forces in bacterial microevolution. they have been repeatedly linked with adaptation of lineages to new lifestyles, and in particular, pathogenicity. comparative genomics has the potential to elucidate this genetic flux, but there are many methodological challenges involved in inferring evolutionary events from collections of genome sequences. here we describe a model-based method for using whole-genome sequences to infer the patterns of gen ...200919015321
espt triggers formation of lamellipodia and membrane ruffles through activation of rac-1 and cdc42.subversion of the eukaryotic cell cytoskeleton is a virulence strategy employed by many bacterial pathogens. due to the pivotal role of rho gtpases in actin dynamics they are common targets of bacterial effector proteins and toxins. ipgb1, ipgb2 (shigella), sifa, sifb (salmonella) and map and espm (attaching and effacing pathogens) constitute a family of type iii secretion system effectors that subverts small gtpase signalling pathways. in this study we identified and characterized espt from cit ...200919016787
mxic is secreted by and controls the substrate specificity of the shigella flexneri type iii secretion apparatus.many gram-negative pathogenic bacteria use a type iii secretion (t3s) system to interact with cells of their hosts. mechanisms controlling the hierarchical addressing of needle subunits, translocators and effectors to the t3s apparatus (t3sa) are still poorly understood. we investigated the function of mxic, the member of the yopn/inve/sepl family in the shigella flexneri t3s system. inactivation of mxic led specifically to a deregulated secretion of effectors (including ipaa, ipgd, icsb, ipgb2, ...200919017268
shigella flexneri type iii secretion system effectors ospb and ospf target the nucleus to downregulate the host inflammatory response via interactions with retinoblastoma protein.ospf, ospg and ipah(9.8) are type iii secretion system (t3ss) effectors of shigella flexneri that downregulate the host innate immune response. ospf modifies mitogen-activated protein kinase pathways and polymorphonuclear leucocyte transepithelial migration associated with shigella invasion. ospf also localizes in the nucleus to mediate chromatin remodelling, resulting in reduced transcription of inflammatory cytokines. we now report that ospb can be added to the set of s. flexneri t3ss effector ...200919017275
repression of galp, the galactose transporter in escherichia coli, requires the specific regulator of n-acetylglucosamine metabolism.soupene et al. [j. bacteriol. (2003) 185 5611-5626] made the unexpected observation that the presence of a mutation, in the gene for the n-acetylglucosamine repressor, nagc, increased the growth rate of escherichia coli mg1655 on galactose, an unrelated sugar. we have found that nagc, binds to a single, high-affinity site overlapping the promoter of galp (galactose permease) gene and that expression of galp is repressed by a combination of nagc, galr and gals. in addition to the previously ident ...200919007420
genotypic and phenotypic diversity among induced, stx2-carrying bacteriophages from environmental escherichia coli strains.shiga toxin 2 (stx(2)) gene-carrying bacteriophages have been shown to convert escherichia coli strains to shiga toxin-producing escherichia coli (stec). in this study, 79 e. coli strains belonging to 35 serotypes isolated from wastewaters of both human and animal origin were examined for the presence of stx(2)-carrying bacteriophages in their genomes. the lytic cycle of the bacteriophages was induced by mitomycin, and the bacteriophage fraction was isolated and used for morphological and geneti ...200919011056
tlr4 and myd88 control protection and pulmonary granulocytic recruitment in a murine intranasal rsv immunization and challenge model.an intranasal vaccine composed of toll-like receptor 2 (tlr2) ligand neisseria meningitidis outer membrane proteins and toll-like receptor 4 (tlr4) ligand shigella flexneri lipopolysaccharide (lps) (protollin) and enriched respiratory syncytial virus (rsv) proteins (ersv) has been demonstrated to promote balanced th1/th2 responses without eosinophil recruitment and to protect against challenge in mouse models. we used tlr2, tlr4 and myeloid differentiation factor 88 (myd88) knock-out (-/-) mice ...200919013492
simultaneous detection of enteric bacteria from surface waters by qpcr in comparison with conventional bacterial indicators.a rapid quantitative polymerase chain reaction (qpcr) method was developed for simultaneous detection of enteric bacteria from surface waters by utilizing a pair of universal primers which targeted four bacteria strains, namely shigella dysenteriae, vibrio cholerae, salmonella typhimurium, and escherichia coli. it was estimated that the qpcr method had a 94% confidence, and a detection limit as 2.7 e. coli cells per sample in undiluted dna extracts. the qpcr method was applied for the bacteriolo ...200918931927
the molecular evolutionary history of shigella spp. and enteroinvasive escherichia coli.shigellosis, which caused by shigella and enteroinvasive escherichia coli (eiec), was still a threat to public health. compelling evidence indicates that shigella species and eiec are derived from multiple origins of e. coli and form a single pathovar. eiec strains are regarded as precursors of 'full-blown'shigella evolved from e. coli. by gain and loss of functions, shigella and eiec became successful human pathogens through convergent evolution from diverse genomic backgrounds.200919000785
diversity of tight junctions (tjs) between gastrointestinal epithelial cells and their function in maintaining the mucosal barrier.the gastrointestinal epithelium, which is covered by a single layer of epithelial cells, including enterocytes, intraepithelial lymphocytes, goblet cells, microfold cells, and dendritic cells, serves as a protective barrier separating luminal contents from the underlying tissue compartments. the epithelium plays an important role in the first line of host defense against a variety of pathogens, as well as maintaining the homeostasis in gastrointestinal tract. all these epithelial cells express j ...200918938254
novel chimeric beta-lactamase ctx-m-64, a hybrid of ctx-m-15-like and ctx-m-14 beta-lactamases, found in a shigella sonnei strain resistant to various oxyimino-cephalosporins, including ceftazidime.the plasmid-mediated novel beta-lactamase ctx-m-64 was first identified in shigella sonnei strain uih-1, which exhibited resistance to cefotaxime (mic, 1,024 microg/ml) and ceftazidime (mic, 32 microg/ml). the amino acid sequence of ctx-m-64 showed a chimeric structure of a ctx-m-15-like beta-lactamase (n- and c-terminal moieties) and a ctx-m-14-like beta-lactamase (central portion, amino acids 63 to 226), suggesting that it originated by homologous recombination between the corresponding genes. ...200918955524
a genomic distance based on mum indicates discontinuity between most bacterial species and genera.the fundamental unit of biological diversity is the species. however, a remarkable extent of intraspecies diversity in bacteria was discovered by genome sequencing, and it reveals the need to develop clear criteria to group strains within a species. two main types of analyses used to quantify intraspecies variation at the genome level are the average nucleotide identity (ani), which detects the dna conservation of the core genome, and the dna content, which calculates the proportion of dna share ...200918978054
the temporal dynamics of slightly deleterious mutations in escherichia coli and shigella spp.the shigella are recently emerged clones of escherichia coli, which have independently adopted an intracellular pathogenic lifestyle. we examined the molecular evolutionary consequences of this niche specialization by comparing the normalized, directional frequency profiles of unique polymorphisms within 2,098 orthologues representing the intersection of five e. coli and four shigella genomes. we note a surfeit of at-enriching changes (gc-->at), transversions, and nonsynonymous changes in the sh ...200918984902
detection of escherichia coli, salmonella spp., shigella spp., yersinia enterocolitica, vibrio cholerae, and campylobacter spp. enteropathogens by 3-reaction multiplex polymerase chain reaction.the magnitude of bacterial diarrhea in developing countries is largely unknown because affordable detection methods are not available. we have developed a polymerase chain reaction (pcr)-based assay for use in areas with limited resources to screen for diarrheogenic strains from clinical isolates. to simplify the assay and minimize reagents, our method implemented the use of plasmids rather than bacteria as template controls and the use of bacterial suspensions or crude dna preparations rather t ...200918990527
small-molecule type iii secretion system inhibitors block assembly of the shigella type iii secreton.type iii secretion systems (t3sss) are essential virulence devices for many gram-negative bacteria that are pathogenic for plants, animals, and humans. they serve to translocate virulence effector proteins directly into eukaryotic host cells. t3sss are composed of a large cytoplasmic bulb and a transmembrane region into which a needle is embedded, protruding above the bacterial surface. the emerging antibiotic resistance of bacterial pathogens urges the development of novel strategies to fight b ...200918996990
bacterial enteropathogens of neonates admitted to an urban diarrhoeal hospital in bangladesh.data on the aetiology of diarrhoea in neonates are scarce, especially from developing countries including bangladesh. a retrospective review of the electronic database of the microbiology laboratory of the international centre for diarrhoeal disease research, bangladesh (icddr,b), was carried out to examine enteropathogens associated with diarrhoea in neonates. stool specimens of the neonates on admission to the dhaka hospital of icddr,b were collected and sent to the laboratory for direct plati ...200918840632
rapid emergence of third generation cephalosporin resistant shigella spp. in southern vietnam. 200919141753
giardia duodenalis assemblages associated with diarrhea in children in south india identified by pcr-rflp.giardial diarrhea in a birth cohort of 452 children in an urban slum in south india was characterized. of the 155 episodes that occurred in 99 children, 73% were acute diarrhea. children with better educated mothers and a toilet at home had lower odds of acquiring giardial diarrhea, whereas low socioeconomic status and drinking municipal water were associated with greater risk. children with co-infections tended to have a slightly longer duration of diarrhea (p = 0.061) and showed significantly ...200919141832
improvement in detection of enterotoxigenic escherichia coli in patients with travelers' diarrhea by increasing the number of e. coli colonies tested.no cause of one-third of travelers' diarrhea (td) cases can be detected despite microbiologic assessment. we propose that these pathogen-negative td cases include undetected enterotoxigenic escherichia coli (etec). as a standard in diagnostic microbiology, samples of five e. coli colonies were tested to detect etec from stool cultures. we compared the sensitivities and the number of etec detected by 20 colonies with those of 5, 10, and 15 colonies. the percent detection of etec with five e. coli ...200919141833
septins regulate bacterial entry into host cells.septins are conserved gtpases that form filaments and are required in many organisms for several processes including cytokinesis. we previously identified sept9 associated with phagosomes containing latex beads coated with the listeria surface protein inlb.200919145258
etiology of acute gastroenteritis in three sentinel general practices, austria 2007.we studied the etiology of acute gastroenteritis in a village with a total population of approximately 6,000. this is the first study in austria that has investigated a broad range of pathogens recovered from an unselected population of patients who had consulted general practitioners because of gastroenteritis.200919148576
bacterial particle endocytosis by epithelial cells is selective and enhanced by tumor necrosis factor receptor ligands.bacterial pathogens use virulence strategies to invade epithelial barriers, but active processes of epithelial cells may also contribute to the endocytosis of microbial particles. to focus on the latter, we studied the uptake of fixed and fluorescently labeled bacterial particles in intestinal and bronchoepithelial cell cultures and found it to be enhanced in caco-2bbe and nci-h292 cells after treatment with tumor necrosis factor alpha and an agonist antibody against the lymphotoxin beta recepto ...200919129472
genetics and environmental regulation of shigella iron transport systems.shigella spp. have transport systems for both ferric and ferrous iron. the iron can be taken up as free iron or complexed to a variety of carriers. all shigella species have both the feo and sit systems for acquisition of ferrous iron, and all have at least one siderophore-mediated system for transport of ferric iron. several of the transport systems, including sit, iuc/iuta (aerobactin synthesis and transport), fec (ferric di-citrate uptake), and shu (heme transport) are encoded within pathogen ...200919130265
outbreaks of shigella sonnei infections in denmark and australia linked to consumption of imported raw baby corn.we investigated an outbreak of shigella sonnei infections in denmark and australia associated with imported baby corn from one packing shed in thailand. we reviewed nationwide surveillance and undertook case finding, food trace-back and microbiological investigation of human, food and environmental samples. a recall of baby corn and sugar snaps was based on descriptive epidemiological evidence. in denmark, we undertook a retrospective cohort study in one workplace. in total, 215 cases were labor ...200919134229
frequency of isolation of various subtypes and antimicrobial resistance of shigella from urban slums of karachi, pakistan.shigellosis remains a major public health problem in developing countries. antimicrobial resistance has complicated the empirical treatment. knowledge of serotypes is crucial in vaccine development, as cross-protection between various serotypes is limited. therefore we conducted a prospective study to determine the frequency of isolation of shigella serotypes and antimicrobial resistance.200919135399
safety and immunogenicity of sc599, an oral live attenuated shigella dysenteriae type-1 vaccine in healthy volunteers: results of a phase 2, randomized, double-blind placebo-controlled trial.sc599 vaccine is a live shigella dysenteriae 1 strain attenuated by deletion of invasion [icsa], iron chelation [ent, fep] and shiga toxin a subunit [stxa] genes. in a preliminary phase 1 single dose prospective study, we showed that sc599 vaccine was well tolerated, and the maximum tolerable dose was greater than 10(8) cfu [sadorge c, ndiaye a, beveridge n, frazer s, giemza r, jolly n, et al. phase 1 clinical trial of live attenuated shigella dysenteriae type-1 deltaicsa deltaent deltafep delta ...200919135496
trends in antimicrobial resistance of fecal shigella and salmonella isolates in tehran, iran.the resistance of bacteria to commonly prescribed antibiotics is increasing both in developing as well as developed countries. resistance has emerged even to newer, more potent antimicrobial agents. the present study was therefore undertaken to report resistance rates to antimicrobial agents in 2487 stool culture isolates in a tertiary care hospital between 1996 and 2000 and 2001 and 2005.200919136781
extensive antibody cross-reactivity among infectious gram-negative bacteria revealed by proteome microarray analysis.antibodies provide a sensitive indicator of proteins displayed by bacteria during sepsis. because signals produced by infection are naturally amplified during the antibody response, host immunity can be used to identify biomarkers for proteins that are present at levels currently below detectable limits. we developed a microarray comprising approximately 70% of the 4066 proteins contained within the yersinia pestis proteome to identify antibody biomarkers distinguishing plague from infections ca ...200919112181
antimicrobial activity of prulifloxacin tested against a worldwide collection of gastroenteritis-producing pathogens, including those causing traveler's diarrhea.prulifloxacin, the prodrug of ulifloxacin (active component), is a newer fluoroquinolone with broad activity against enteric and nonenteric gram-negative bacilli. ulifloxacin and other oral comparator agents were tested for activity against 582 gastroenteritis strains from global surveillance studies. ulifloxacin was highly active against escherichia coli, salmonella spp., shigella spp., yersinia spp., vibrio spp., aeromonas spp., and plesiomonas spp. (mic(50)s and mic(90)s, <or=0.03 microg/ml a ...200919114678
diagnosis and prevalence of enteropathogenic bacteria in children less than 5 years of age with acute diarrhea in tehran children's hospitals.acute diarrhea disease is the second cause of death among all infectious diseases in children younger than 5 years of age worldwide. the aim of this study was to employ a combination of biochemical, microbiological and molecular diagnostic techniques to investigate the stools of iranian children with acute diarrhea for bacterial enteropathogens.200919117609
fungal and bacterial killing by neutrophils.neutrophils are professional phagocytes of the innate immune system that are essential to control bacterial and fungal infections. these cells engulf and kill invading microbes. additionally, activated neutrophils are able to release neutrophil extracellular traps (nets). these fibers consist of chromatin decorated with antimicrobial proteins to trap and kill microbes. appropriate quantitative methods are required to understand the nature of interactions of neutrophils with pathogens. here we pr ...200919089391
molecular detection of all 34 distinct o-antigen forms of shigella.shigella is the cause of shigellosis or bacillary dysentery, the occurrence of which is estimated to be 165 million cases per year worldwide, resulting in 1.1 million deaths. rapid and reliable assays for detecting and identifying shigella in food, environmental and clinical samples are therefore necessary. shigella species are traditionally identified by their o antigens. this study developed a dna microarray targeting o-serotype-specific genes to detect all 34 distinct o-antigen forms of shige ...200919074655
contribution of the periplasmic chaperone skp to efficient presentation of the autotransporter icsa on the surface of shigella flexneri.icsa is an outer membrane protein in the autotransporter family that is required for shigella flexneri pathogenesis. following its secretion through the sec translocon, icsa is incorporated into the outer membrane in a process that depends on yaet, a component of an outer membrane beta-barrel insertion machinery. we investigated the role of the periplasmic chaperone skp in icsa maturation. skp is required for the presentation of the mature amino terminus (alpha-domain) of icsa on the bacterial s ...200919047350
lactobacilli facilitate maintenance of intestinal membrane integrity during shigella dysenteriae 1 infection in rats.lactobacilli are used in various dairy products and fermented foods for their potential health beneficial effects. recently we reported the protective role of lactobacillus rhamnosus and lactobacillus acidophilus during shigella dysenteriae 1 infection. nevertheless, investigations on the membrane-stabilizing effect of l. rhamnosus and l. acidophilus have not been done. hence, the present study evaluated the effect of l. rhamnosus and l. acidophilus on the maintenance of intestinal membrane inte ...200919036564
selective ccr2-targeted macrophage depletion ameliorates experimental mesangioproliferative glomerulonephritis.the ccl2/ccr2 chemokine/receptor axis directs the chemotaxis of infiltrating monocytes/macrophages and t cells and plays a pivotal role in tissue damage and fibrosis in kidney diseases. the eradication of the activated leucocytes should diminish the production of inflammatory mediators, limit tissue damage and ameliorate disease. a recombinant fusion protein (opl-ccl2-lpm) comprised of the human ccl2 (monocyte chemoattractant protein-1) chemokine fused to a truncated form of the enzymatically ac ...200919040610
antigen-specific b memory cell responses to lipopolysaccharide (lps) and invasion plasmid antigen (ipa) b elicited in volunteers vaccinated with live-attenuated shigella flexneri 2a vaccine candidates.we evaluated b memory responses in healthy adult volunteers who received one oral dose of live-attenuated shigella flexneri 2a vaccine. lps-specific b(m) cells increased from a median of 0 at baseline to 20 spot forming cells (sfc)/10(6) expanded cells following vaccination (p=0.008). a strong correlation was found between post-vaccination anti-lps b(m) cell counts and peak serum anti-lps igg titers (rs=0.95, p=0.0003). increases in b(m) specific for ipab approaching significance were also obser ...200919022324
interaction of enteric bacterial pathogens with murine embryonic stem cells.embryonic stem (es) cells are susceptible to genetic manipulation and retain the potential to differentiate into diverse cell types, which are factors that make them potentially attractive cells for studying host-pathogen interactions. murine es cells were found to be susceptible to invasion by salmonella enterica serovar typhimurium and shigella flexneri and to the formation of attaching and effacing lesions by enteropathogenic escherichia coli. s. enterica serovar typhimurium and s. flexneri c ...200919029302
ceramide and cerebrosides from the octocoral sarcophyton ehrenbergi.chemical investigation of the octocoral sarcophyton ehrenbergi, collected at the dongsha islands, taiwan, has led to the isolation of a known ceramide (1) and two new cerebrosides, sarcoehrenosides a (2) and b (4), along with three known cerebrosides (3, 5, and 6). the structures of the new compounds were established by spectroscopic and chemical methods. sarcoehrenoside a (2) differs from previously known marine cerebrosides in that it possesses a rare alpha-glucose moiety. compounds 1-6 were e ...200919006372
tight junctions as targets of infectious agents.the epithelial barrier is a critical border that segregates luminal material from entering tissues. essential components of this epithelial fence are physical intercellular structures termed tight junctions. these junctions use a variety of transmembrane proteins coupled with cytoplasmic adaptors, and the actin cytoskeleton, to attach adjacent cells together thereby forming intercellular seals. breaching of this barrier has profound effects on human health and disease, as barrier deficiencies ha ...200919059200
seasonal stability of cladophora-associated salmonella in lake michigan watersheds.the bacterial pathogens shigella, salmonella, campylobacter, and shiga toxin-producing e. coli (stec) were recently found to be associated with cladophora growing in southern lake michigan. preliminary results indicated that the salmonella strains associated with cladophora were genetically identical to each other. however, because of the small sample size (n=37 isolates) and a lack of information on spatial-temporal relationships, the nature of the association between cladophora and salmonella ...200919059626
prevalence of sulfonamide resistance genes in bacterial isolates from manured agricultural soils and pig slurry in the united kingdom.the prevalences of three sulfonamide resistance genes, sul1, sul2, and sul3 and sulfachloropyridazine (scp) resistance were determined in bacteria isolated from manured agricultural clay soils and slurry samples in the united kingdom over a 2-year period. slurry from tylosin-fed pigs amended with scp and oxytetracycline was used for manuring. isolates positive for sul genes were further screened for the presence of class 1 and 2 integrons. phenotypic resistance to scp was significantly higher in ...200919064898
antimicrobial activity of broth fermented with kefir grains.kefir grains originate from the caucasus region and are used for preparing beverages using sugar solution, milk, and fruit juice. as long as they are formed by a microbial consortium useful in the intestine, the produced drinks can be called probiotics. the aim of this study was to determine the antimicrobial activity during kefir fermentation in sugar broth. fermentations with three kinds of carbohydrates (molasses, demerara sugar, and brown sugar) as carbon source were carried out. brown sugar ...200918663417
mitracarpus frigidus aerial parts exhibited potent antimicrobial, antileishmanial, and antioxidant effects.the crude extract and the hexane, ch(2)cl(2), etoac, n-buoh, and hydromethanolic fractions of the aerial parts of mitracarpus frigidus were evaluated against promastigote forms of two species of leishmania (l. chagasi and l. amazonensis), 11 strains of bacteria (staphylococcus aureus, pseudomonas aeruginosa, salmonella enterica sorovar tythimurium, shigella sonnei, klebsiella pneumoniae, escherichia coli, micrococcus luteus, enterococcus faecalis, enterobacter cloacae, streptococcus pyogenes and ...200918644325
effect of lactoferrin on enteric pathogens.much has been learned in recent years about the mechanisms by which breastfeeding improves child health and survival. however, there has been little progress in using these insights to improve pediatric care. factors that are important for protecting the breast fed infant might be expected to decrease the adverse effects of weaning on diarrhea, growth, and development. lactoferrin, an iron-binding protein with multiple physiological functions (anti-microbial, anti-inflammatory, and immunomodulat ...200918472012
international foodborne outbreak of shigella sonnei infection in airline passengers.during 22-24 august 2004, an outbreak of shigella sonnei infection affected air travellers who departed from hawaii. forty-seven passengers with culture-confirmed shigellosis and 116 probable cases who travelled on 12 flights dispersed to japan, australia, 22 us states, and american samoa. all flights were served by one caterer. pulsed-field gel electrophoresis of all 29 s. sonnei isolates yielded patterns that matched within one band. food histories and menu reviews identified raw carrot served ...200918177516
etiology of childhood diarrhea in the northeast of brazil: significant emergent diarrheal pathogens.in a study conducted in joão pessoa, northeast of brazil, 2344 escherichia coli isolated from 290 infants with diarrhea and 290 healthy matched controls were analyzed for virulence traits. enteroaggregative e. coli (eaec) was the most prevalent pathogen associated to acute diarrhea. based on the results of colony blot hybridization, serotyping, and hep-2 cell adherence assays, strains were separated in categories as typical enteropathogenic e. coli (epec) (1.7%), atypical epec (a-epec) (9.3%), e ...201018508227
phenotypic and genotypic characterization of shigella spp. with reference to its virulence genes and antibiogram analysis from river narmada.water samples of the river narmada from origin to end were analyzed for the presence of shigellae. analysis of 40 water samples by biotyping, serotyping, and molecular typing were done. out of all 40 isolates, 23 were identified as shigella flexneri, 10 as shigella sonnei, and seven as shigella dysenteriae. serotyping was found to be a better identification method than biotyping since biotyping was not found to be very sharp. in the present investigation, amplified ribosomal dna restriction anal ...201019501495
lactobacilli inhibit shigella dysenteriae 1 induced pro-inflammatory response and cytotoxicity in host cells via impediment of shigella-host interactions.shigella dysenteriae type 1 dysentery is a major cause of morbidity and mortality in children from less developed and developing countries. the present study explores the hypothesis that lactobacilli protect the host cell during s. dysenteriae type 1 infection and its mechanism of action.201019535308
survey of bacterial populations present in us-produced linerboard with high recycle content.to survey paperboard products from 17 us mills for bacterial populations and for bacteria potentially harmful to human health.201019645765
differential expression of enteric neuroimmune-network in invasive and acute watery diarrhoea.we aimed to evaluate the changes of nerve morphology and distribution of neurotransmitters and neuropeptides in the rectum of shigella flexneri-infected patients and in the duodenum of vibrio cholerae o1-infected patients. nerve morphology was observed by transmission electron microscopy. immunoreactivity of nerve growth factor (ngf), neurotransmitters and neuropeptides in tissues were studied by immunohistochemistry. ultrastructural analysis of intestinal biopsy revealed persisting axons degene ...201019650770
biennial hyperepidemic shigellosis in an observant jewish community.we aimed to study patterns of shigellosis in a large observant jewish community in israel and to describe local interventions during outbreaks. surveillance data from the ministry of health were used to calculate incidence rates in 1998-2006, both in the city of bene beraq and the tel aviv district. information on isolates was collected from the bacteriological laboratory of a community hospital. public notices and educational conferences conveyed a message to increase personal hygiene and keep ...201019602299
a novel antisense rna regulates at transcriptional level the virulence gene icsa of shigella flexneri.the virulence gene icsa of shigella flexneri encodes an invasion protein crucial for host colonization by pathogenic bacteria. within the intergenic region vira-icsa, we have discovered a new gene that encodes a non-translated antisense rna (named rnag), transcribed in cis on the complementary strand of icsa. in vitro transcription assays show that rnag promotes premature termination of transcription of icsa mrna. transcriptional inhibition is also observed in vivo by monitoring the expression p ...201020129941
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