Publications
| Title | Abstract | Year Filter | PMID(sorted descending) Filter |
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| igm-mediated autoimmune responses to oxidative specific epitopes, but not nitrosylated adducts, are significantly decreased in pregnancy: association with bacterial translocation, perinatal and lifetime major depression and the tryptophan catabolite (trycat) pathway. | immunoglubulin (ig)m responses directed to oxidative specific epitopes (oses) and nitric oxide (no)-adducts are significantly associated with major depression and physio-somatic symptoms. end of term serum igm responses to oses and no-adducts were assayed in pregnant women with (n = 24) and without prenatal depression (n = 25) as well as in 24 non-pregnant women. associations of igm/iga responses to gram-negative gut commensal bacteria (leaky gut index) and iga/igm responses to tryptophan catabo ... | 2017 | 28600633 |
| outcomes, cost comparison, and patient satisfaction during long-term central venous access in cancer patients: experience from a tertiary care cancer institute in south india. | prolonged treatment, frequent administration of chemotherapy, antibiotics and blood products in cancer patients requires long term venous access. central venous catheters (cvc) inserted into the subclavian vein or internal jugular vein, peripherally inserted central venous catheters (picc) and chemoport (cp) are the commonly used central venous access devices (cvad). | 2016 | 28144088 |
| whole genome sequencing reveals high-resolution epidemiological links between clinical and environmental klebsiella pneumoniae. | klebsiella pneumoniae is a gram-negative bacterial species capable of occupying a broad range of environmental and clinical habitats. known as an opportunistic pathogen, it has recently become a major causative agent of clinical infections worldwide. despite growing knowledge about the highly diverse population of k. pneumoniae, the evolution and clinical significance of environmental k. pneumoniae, as well as the relationship between clinical and environmental k. pneumoniae, are poorly defined. | 2017 | 28118859 |
| intestinal bacterial colonization in the first 2 weeks of life of nigerian neonates using standard culture methods. | the pattern and timing of development of intestinal microflora in nigerian infants have been scarcely researched. this study was carried out to investigate the bacteria flora in the rectum of healthy neonates in ibadan, nigeria. | 2016 | 28083526 |
| urinary tract infection caused by citrobacter koseri in a patient with spina bifida, an ileal conduit and renal caluli progressing to peri-nephric abscess and empyema. | urological problems are common in spina bifida and are often treated with urinary diversions. spina bifida and ileal conduits put patients at increased risk for ascending urinary tract infections. here we present a novel case of a citrobacter koseri urinary tract infection complicated by a perinephric abscess with pleural extension. to our knowledge, no case of an ascending c. koseri uti progressing to peri-nephric abscess and empyema by direct extension exists in the literature. | 2017 | 28083480 |
| detection of ampc β-lactamase producing bacteria isolated in neonatal sepsis. | the objective of this study was to determine the occurrence and antimicrobial profile of ampc β-lactamase producing bacteria. | 2016 | 28083055 |
| identical bacterial populations colonize premature infant gut, skin, and oral microbiomes and exhibit different in situ growth rates. | the initial microbiome impacts the health and future development of premature infants. methodological limitations have led to gaps in our understanding of the habitat range and subpopulation complexity of founding strains, as well as how different body sites support microbial growth. here, we used metagenomics to reconstruct genomes of strains that colonized the skin, mouth, and gut of two hospitalized premature infants during the first month of life. seven bacterial populations, considered to b ... | 2017 | 28073918 |
| outcomes of infectious versus sterile perforated corneal ulcers after therapeutic penetrating keratoplasty in the united states. | purpose. to compare the long-term outcomes of infectious versus sterile perforated corneal ulcers after therapeutic penetrating keratoplasty in the united states. methods. the charts of 45 consecutive eyes that underwent primary therapeutic penetrating keratoplasty for a perforated corneal ulcer at a single center were retrospectively reviewed. the perforated ulcers were classified as infectious or sterile and the underlying demographics, clinical features, and 36-month outcomes were compared am ... | 2016 | 28070416 |
| intestinal enterobacteriaceae that protect nematodes from the effects of benzimidazoles. | the objective of this study was to investigate an interaction between nematodes and gut enterobacteriaceae that use benzimidazoles as a carbon source. by addressing this objective, we identified an anthelmintic resistance-like mechanism for gastrointestinal nematodes. we isolated 30 gut bacteria (family enterobacteriaceae) that subsist on and putatively catabolize benzimidazole-class anthelmintics. c. elegans was protected from the effects of benzimidazoles when co-incubated with these enterobac ... | 2016 | 28066686 |
| cutaneous complications of molecular targeted therapy used in oncology. | the new molecular targeted therapy has been developed over the past decades by using the molecular targeted molecular changes discovered in specific types of cancer. unfortunately, most of these agents (epidermal growth factor receptors, multi-targeted small molecule tyrosine kinase inhibitors, monoclonal antibodies) have severe cutaneous adverse reactions, that not only interfere with the patient's quality of life, but also are dose-limiting and may require treatment interruptions. these cutane ... | 2016 | 27974909 |
| risk factors for bacteremia in patients with urinary catheter-associated bacteriuria. | catheter-associated bacteriuria is complicated by secondary bacteremia in 0.4% to 4.0% of cases. the directly attributable mortality rate is 12.7%. | 2016 | 27965229 |
| mechanisms of evolution in high-consequence drug resistance plasmids. | the dissemination of resistance among bacteria has been facilitated by the fact that resistance genes are usually located on a diverse and evolving set of transmissible plasmids. however, the mechanisms generating diversity and enabling adaptation within highly successful resistance plasmids have remained obscure, despite their profound clinical significance. to understand these mechanisms, we have performed a detailed analysis of the mobilome (the entire mobile genetic element content) of a set ... | 2016 | 27923922 |
| positive and strongly relaxed purifying selection drive the evolution of repeats in proteins. | protein repeats are considered hotspots of protein evolution, associated with acquisition of new functions and novel phenotypic traits, including disease. paradoxically, however, repeats are often strongly conserved through long spans of evolution. to resolve this conundrum, it is necessary to directly compare paralogous (horizontal) evolution of repeats within proteins with their orthologous (vertical) evolution through speciation. here we develop a rigorous methodology to identify highly perio ... | 2016 | 27857066 |
| microbiome analysis reveals the abundance of bacterial pathogens in rousettus leschenaultii guano. | bats are crucial for proper functioning of an ecosystem. they provide various important services to ecosystem and environment. while, bats are well-known carrier of pathogenic viruses, their possible role as a potential carrier of pathogenic bacteria is under-explored. here, using culture-based approach, employing multiple bacteriological media, over thousand bacteria were cultivated and identified from rousettus leschenaultii (a frugivorous bat species), the majority of which were from the fami ... | 2016 | 27845426 |
| a review of global initiatives to fight antibiotic resistance and recent antibiotics׳ discovery. | data from across the world have shown an overall decline in the antibiotic pipeline and continually rising resistance to all first-line and last-resort antibiotics. the gaps in our knowledge of existing prevalence and mechanisms of antibiotic resistance (abr) are all too well known. several decades of antibiotic abuse in humans, animals, and agricultural practices have created health emergency situations and huge socio-economic impact. this paper discusses key findings of the studies conducted b ... | 2016 | 27818921 |
| citrobacter koseri pneumonia as initial presentation of underlying pulmonary adenocarcinoma. | citrobacter koseri is a motile, gram-negative rod traditionally known to cause infection in individuals with significant comorbidities and immunocompromised status. while most cases represent nosocomial infections, rarely community-acquired infections have been reported. we present a previously healthy man in his 60s with c. koseri pneumonia who was subsequently found to have underlying pulmonary adenocarcinoma, illustrating the need for further investigation for immunodeficiency and/or intrapul ... | 2016 | 27746678 |
| genome sequences of nine gram-negative vaginal bacterial isolates. | the vagina is home to a wide variety of bacteria that have great potential to impact human health. here, we announce reference strains (now available through bei resources) and draft genome sequences for 9 gram-negative vaginal isolates from the taxa citrobacter, klebsiella, fusobacterium, proteus, and prevotella. | 2016 | 27688330 |
| genome sequences of 12 bacterial isolates obtained from the urine of pregnant women. | the presence of bacteria in urine can pose significant risks during pregnancy. however, there are few reference genome strains for many common urinary bacteria. we isolated 12 urinary strains of streptococcus, staphylococcus, citrobacter, gardnerella, and lactobacillus these strains and their genomes are now available to the research community. | 2016 | 27688327 |
| characterization and genome sequencing of a citrobacter freundii phage cfp1 harboring a lysin active against multidrug-resistant isolates. | citrobacter spp., although frequently ignored, is emerging as an important nosocomial bacterium able to cause various superficial and systemic life-threatening infections. considered to be hard-to-treat bacterium due to its pattern of high antibiotic resistance, it is important to develop effective measures for early and efficient therapy. in this study, the first myovirus (vb_cfrm_cfp1) lytic for citrobacter freundii was microbiologically and genomically characterized. its morphology, activity ... | 2016 | 27683211 |
| bacterial etiology and antibiotic resistance profile of community-acquired urinary tract infections in a cameroonian city. | introduction. community-acquired urinary tract infections (cautis) are usually treated empirically. geographical variations in etiologic agents and their antibiotic sensitivity patterns are common. knowledge of antibiotic resistance trends is important for improving evidence-based recommendations for empirical treatment of utis. our aim was to determine the major bacterial etiologies of cautis and their antibiotic resistance patterns in a cosmopolitan area of cameroon for comparison with prescri ... | 2016 | 27667998 |
| carbapenem-resistant enterobacteriaceae: prevalence and risk factors in a single community-based hospital in korea. | carbapenemase-producing enterobacteriaceae (cpe) are gram-negative bacteria with increasing prevalence of infection worldwide. in korea, 25 cases of cpe isolates were reported by the korea centers for disease control and prevention in 2011. most cpe cases were detected mainly at tertiary referral hospitals. we analyzed the prevalence and risk factors for carbapenem-resistant enterobacteriaceae (cre) in a mid-sized community-based hospital in korea. | 2016 | 27659436 |
| correction: clinical impact of maldi-tof ms identification and rapid susceptibility testing on adequate antimicrobial treatment in sepsis with positive blood cultures. | [this corrects the article doi: 10.1371/journal.pone.0156299.]. | 2016 | 27658295 |
| a review of shv extended-spectrum β-lactamases: neglected yet ubiquitous. | β-lactamases are the primary cause of resistance to β-lactams among members of the family enterobacteriaceae. shv enzymes have emerged in enterobacteriaceae causing infections in health care in the last decades of the twentieth century, and they are now observed in isolates in different epidemiological settings both in human, animal and the environment. likely originated from a chromosomal penicillinase of klebsiella pneumoniae, shv β-lactamases currently encompass a large number of allelic vari ... | 2016 | 27656166 |
| bacteriophages in clinical samples can interfere with microbiological diagnostic tools. | bacteriophages are viruses that infect bacteria, and they are found everywhere their bacterial hosts are present, including the human body. to explore the presence of phages in clinical samples, we assessed 65 clinical samples (blood, ascitic fluid, urine, cerebrospinal fluid, and serum). infectious tailed phages were detected in >45% of ascitic fluid and urine samples. three examples of phage interference with bacterial isolation were observed. phages prevented the confluent bacterial growth re ... | 2016 | 27609086 |
| detection of a yersinia pestis gene homologue in rodent samples. | a homologue to a widely used genetic marker, pla, for yersinia pestis has been identified in tissue samples of two species of rat (rattus rattus and rattus norvegicus) and of mice (mus musculus and apodemus sylvaticus) using a microarray based platform to screen for zoonotic pathogens of interest. samples were from urban locations in the uk (liverpool) and canada (vancouver). the results indicate the presence of an unknown bacterium that shares a homologue for the pla gene of yersinia pestis, so ... | 2016 | 27602258 |
| assessment of genetically engineered trabulsiella odontotermitis as a 'trojan horse' for paratransgenesis in termites. | the formosan subterranean termite, coptotermes formosanus is an invasive urban pest in the southeastern usa. paratransgenesis using a microbe expressed lytic peptide that targets the termite gut protozoa is currently being developed for the control of formosan subterranean termites. in this study, we evaluated trabulsiella odontotermitis, a termite-specific bacterium, for its potential to serve as a 'trojan horse' for expression of gene products in termite colonies. | 2016 | 27595984 |
| colistin- and carbapenem-resistant escherichia coli harboring mcr-1 and blandm-5, causing a complicated urinary tract infection in a patient from the united states. | colistin is increasingly used as an antibiotic of last resort for the treatment of carbapenem-resistant gram-negative infections. the plasmid-borne colistin resistance gene mcr-1 was initially identified in animal and clinical samples from china and subsequently reported worldwide, including in the united states. of particular concern is the spread of mcr-1 into carbapenem-resistant bacteria, thereby creating strains that approach pan-resistance. while several reports of mcr-1 have involved carb ... | 2016 | 27578755 |
| prevalence and risk factors of gram-negative bacilli causing blood stream infection in patients with malignancy. | to evaluate the epidemiology, risk factors, and antibiotic resistance of gram negative bacteria (gnb) in patients with hematologic or solid organ malignancies. | 2016 | 27570854 |
| prevalence and antimicrobial resistance pattern of bacterial strains isolated from patients with urinary tract infection in messalata central hospital, libya. | to investigate the prevalence of urinary tract infection among patients at messalata central hospital, libya, to identify the causative bacteria, and to explore their resistance pattern to antimicrobials. | 2016 | 27569886 |
| bacteremia due to citrobacter braakii: a case report and literature review. | among the citrobacter genus, the most commonly isolated bacteria from human specimens are citrobacter freundii and citrobacter koseri, and previous cases of infection due to citrobacter braakii have been rarely reported. we present a case of bacteremia due to c. braakii in a 38-year-old woman with cervical cancer. she was admitted to our hospital with complaints of a fever, chills, and nausea. blood culture results showed gram-negative bacilli identified as c. braakii via matrix-assisted laser d ... | 2016 | 27553069 |
| structures of the activator of k. pneumonia biofilm formation, mrkh, indicates pilz domains involved in c-di-gmp and dna binding. | the pathogenesis of klebsiella pneumonia is linked to the bacteria's ability to form biofilms. mannose-resistant klebsiella-like (mrk) hemagglutinins are critical for k pneumonia biofilm development, and the expression of the genes encoding these proteins is activated by a 3',5'-cyclic diguanylic acid (c-di-gmp)-regulated transcription factor, mrkh. to gain insight into mrkh function, we performed structural and biochemical analyses. data revealed mrkh to be a monomer with a two-domain architect ... | 2016 | 27551088 |
| antibiotic treatment and resistance in chronic wounds of vascular origin. | the problem of antibiotic resistance is worldwide and affects many types of pathogens. this phenomenon has been growing for decades and nowadays we are faced with a wide range of worrisome pathogens that are becoming resistant and many pathogens that may soon be untreatable. the aim of this study was to determine the resistance and antibiotic treatment in chronic wounds of vascular origin. | 2016 | 27547055 |
| fluoroquinolone-resistant and extended-spectrum β-lactamase-producing escherichia coli infections in patients with pyelonephritis, united states(1). | for 2013-2014, we prospectively identified us adults with flank pain, temperature >38.0°c, and a diagnosis of acute pyelonephritis, confirmed by culture. cultures from 453 (86.9%) of 521 patients grew escherichia coli. among e. coli isolates from 272 patients with uncomplicated pyelonephritis and 181 with complicated pyelonephritis, prevalence of fluoroquinolone resistance across study sites was 6.3% (range by site 0.0%-23.1%) and 19.9% (0.0%-50.0%), respectively; prevalence of extended-spectrum ... | 2016 | 27532362 |
| systematic review: adverse events of fecal microbiota transplantation. | fecal microbiota transplantation (fmt) is a microbiota-based therapy that shows therapeutic potential in recurrent or refractory clostridium difficile infections and other intestinal or extra-intestinal disorders. nonetheless, adverse events (aes) remain a major challenge in the application of fmt. | 2016 | 27529553 |
| antibiotic utilization patterns in patients with ventilator-associated pneumonia: a canadian context. | this retrospective cohort study describes the patterns of antibiotic use for the treatment of ventilator-associated pneumonia (vap) in the calgary zone of alberta health services. timing, appropriateness, and duration of antibiotics were evaluated in two hundred consecutive cases of vap derived from 4 adult intensive care units (icu). antibiotic therapy was initiated in less than 24 hours from vap diagnosis in 83% of cases. although most patients (89%) received empiric therapy that demonstrated ... | 2016 | 27525016 |
| high-density lipoprotein binds to mycobacterium avium and affects the infection of thp-1 macrophages. | high-density lipoprotein (hdl) is involved in innate immunity toward various infectious diseases. concerning bacteria, hdl is known to bind to lipopolysaccharide (lps) and to neutralize its physiological activity. on the other hand, cholesterol is known to play an important role in mycobacterial entry into host cells and in survival in the intracellular environment. however, the pathogenicity of mycobacterium avium (m. avium) infection, which tends to increase worldwide, remains poorly studied. ... | 2016 | 27516907 |
| risk factors to predict drug-resistant pathogens in hemodialysis-associated pneumonia. | after the concept of healthcare associated pneumonia (hcap) was introduced in 2005 by the american thoracic society/infectious disease society of america (ats/idsa), pneumonia in hemodialysis patients has been classified as hcap. even though there are several risk factors and scoring systems of drug-resistant pathogens (drps) in hcap, the risk factors for drps in hemodialysis-associated pneumonia are unclear. | 2016 | 27502599 |
| elevated plasma matrix metalloproteinase-9 and its correlations with severity of disease in patients with ventilator-associated pneumonia. | ventilator-associated pneumonia (vap) increases patient mortality and medical expenditure, and a real-time and reliable method for the rapid diagnosis of vap may help reduce fatal complications. matrix metalloproteinases-9 (mmp-9) is considered significant in the pathogenesis of lung inflammation and infection. therefore, we examined its relationship with the clinical course of vap. this retrospective observational study recruited 30 healthy volunteers, 12 patients who used mechanical ventilatio ... | 2016 | 27499696 |
| determinants of deescalation failure in critically ill patients with sepsis: a prospective cohort study. | introduction. deescalation refers to either discontinuation or a step-down of antimicrobials. despite strong recommendations in the surviving sepsis guidelines (2012) to deescalate, actual practices can vary. our objective was to identify variables that are associated with deescalation failure. methods. in this prospective study of patients with sepsis/septic shock, patients were categorized into 4 groups based on antibiotic administration: no change in antibiotics, deescalation, escalation (whe ... | 2016 | 27493799 |
| assessment of the effectiveness of three different cephalosporins/clavulanate combinations for the phenotypic confirmation of extended spectrum beta lactamases producer bacterial isolates from urine samples at national public health laboratory, kathmandu, nepal. | the extended-spectrum β-lactamase (esbl) producing bacteria are present as the serious public health problems due to their resistance to large number of antibiotics. the main aims of this study were to determine the prevalence and antibiotic resistance patterns of bacteria producing extended-spectrum β-lactamases (esbls) and to find the suitable cephalosporin/clavulanate combination for phenotypic confirmation of esbl production. | 2016 | 27488224 |
| effect of 4 % chlorhexidine on cord colonization among hospital and community births in india: a randomized controlled study. | infections are the single most important cause of neonatal mortality in developing countries. results from trials in asia evaluating the effect of chlorhexidine on neonatal mortality have been encouraging but limited data are available on the impact of cord cleansing on bacterial colonization. further, no data from facility deliveries and impact with time is available. this pilot study was aimed to evaluate the impact of 4 % commercially prepared chlorhexidine on cord colonization and density of ... | 2016 | 27484013 |
| characteristics of ciprofloxacin-resistant enterobacteriaceae isolates recovered from wastewater of an algerian hospital. | hospital effluents are a source of environmental pollution by drugs, antibiotic-resistant bacteria, and resistance genes. quinolones, particularly ciprofloxacin, are commonly detected in these effluents, contributing to the emergence of antimicrobial resistance. the objective of this study was to characterize ciprofloxacin-resistant enterobacteriaceae in hospital effluents. | 2016 | 27482804 |
| a bioinformatics analysis reveals a group of mocr bacterial transcriptional regulators linked to a family of genes coding for membrane proteins. | the mocr bacterial transcriptional regulators are characterized by an n-terminal domain, 60 residues long on average, possessing the winged-helix-turn-helix (whth) architecture responsible for dna recognition and binding, linked to a large c-terminal domain (350 residues on average) that is homologous to fold type-i pyridoxal 5'-phosphate (plp) dependent enzymes like aspartate aminotransferase (aat). these regulators are involved in the expression of genes taking part in several metabolic pathwa ... | 2016 | 27446613 |
| development of a phage cocktail to control proteus mirabilis catheter-associated urinary tract infections. | proteus mirabilis is an enterobacterium that causes catheter-associated urinary tract infections (cautis) due to its ability to colonize and form crystalline biofilms on the catheters surface. cautis are very difficult to treat, since biofilm structures are highly tolerant to antibiotics. phages have been used widely to control a diversity of bacterial species, however, a limited number of phages for p. mirabilis have been isolated and studied. here we report the isolation of two novel virulent ... | 2016 | 27446059 |
| prevalence of extended spectrum beta-lactamase production among uropathogens in south mumbai and its antibiogram pattern. | β-lactams are the most widely used group of antimicrobials. however, increasing resistance to these valuable drugs in uropathogens, mediated principally by β-lactamases, has become a major concern. the present study was undertaken to determine the prevalence of extended spectrum β-lactamase (esbl) producers in clinical isolates of urine specimens, collected from various healthcare centres across south mumbai. a total of 195 gram negative urine isolates were identified as pseudomonas aeruginosa ( ... | 2012 | 27418912 |
| interferon-inducible guanylate-binding proteins at the interface of cell-autonomous immunity and inflammasome activation. | guanylate-binding proteins (gbps) are essential components of cell-autonomous immunity. in response to ifn signaling, gbps are expressed in the cytoplasm of immune and nonimmune cells, where they unleash their antimicrobial activity toward intracellular bacteria, viruses, and parasites. recent studies have revealed that gbps are essential for mediating activation of the caspase-1 inflammasome in response to the gram-negative bacteria salmonella enterica serovar typhimurium, francisella novicida, ... | 2017 | 27418355 |
| musculoskeletal infections associated with citrobacter koseri. | introduction citrobacter koseri is a well known cause of central nervous system infections in the paediatric setting. musculoskeletal infections caused by c koseri are rare, with only 14 previously reported cases. we present the first recorded case of c koseri induced septic arthritis of the knee along with a review of the literature. methods a search of the pubmed, embase(®) and google scholar™ databases was undertaken. only complete or near complete cases were reviewed. findings fourteen muscu ... | 2016 | 27412805 |
| the target spectrum of sdsr small rna in salmonella. | model enteric bacteria such as escherichia coli and salmonella enterica express hundreds of small non-coding rnas (srnas), targets for most of which are yet unknown. some srnas are remarkably well conserved, indicating that they serve cellular functions that go beyond the necessities of a single species. one of these 'core srnas' of largely unknown function is the abundant ∼100-nucleotide sdsr srna which is transcribed by the general stress σ-factor, σ(s) and accumulates in stationary phase. in ... | 2016 | 27407104 |
| senca: a multilayered codon model to study the origins and dynamics of codon usage. | gene sequences are the target of evolution operating at different levels, including the nucleotide, codon, and amino acid levels. disentangling the impact of those different levels on gene sequences requires developing a probabilistic model with three layers. here we present senca (site evolution of nucleotides, codons, and amino acids), a codon substitution model that separately describes 1) nucleotide processes which apply on all sites of a sequence such as the mutational bias, 2) preferences ... | 2016 | 27401173 |
| comparative study of cronobacter identification according to phenotyping methods. | microbiological criteria applied to powdered infant formula (pif) require the absence of all cronobacter spp. consequently, misidentification of isolates from finished products can lead to significant financial losses for manufacturers and could increase the risk of neonatal infection. biochemical identification of suspect isolates using commercially available test panels is recommended for use by pif manufacturers by both the us fda and iso standard methods for cronobacter species; however, phe ... | 2016 | 27401027 |
| high prevalence of extended-spectrum ß-lactamase producing enterobacteriaceae among clinical isolates in burkina faso. | nothing is known about the epidemiology and resistance mechanisms of extended-spectrum ß-lactamase-producing enterobacteriaceae (esbl-pe) in burkina faso. the objective of this study was to determine esbl-pe prevalence and to characterize esbl genes in burkina faso. | 2016 | 27400864 |
| occurrence of enterobacteriaceae in raw meat and in human samples from egyptian retail sellers. | the present study was performed to assess the presence of enterobacteriaceae in raw meat and handlers in egypt using cultivation and matrix-assisted laser desorption ionization time-of-flight mass spectrometry (maldi-tof ms). a total of 100 raw meat samples (chicken and beef meat, 50 each) were randomly purchased from butchers and local meat retailers located at mansoura city, egypt. fifty human samples were collected from meat handlers (hand swabs and stool specimens, 25 each). 228 bacterial is ... | 2014 | 27379312 |
| an 80-year-old woman surgically treated for native valve infective endocarditis caused by citrobacter koseri. | 2017 | 27345426 | |
| temporal trends and risks factors for antimicrobial resistant enterobacteriaceae urinary isolates from outpatients in guadeloupe. | urinary tract infections are bacterial infections most commonly encountered in the community. the resistance rate of uropathogens to commonly prescribed antibiotics has increased worldwide but there are no published data concerning the resistance of strains isolated from community-acquired uti in guadeloupe. to assess the susceptibility patterns of enterobacteriaceae strains isolated from outpatients in guadeloupe we conducted a prospective study from december 2012 to may 2014 among outpatients ... | 2016 | 27342199 |
| strategies used by bacteria to grow in macrophages. | intracellular bacteria are often clinically relevant pathogens that infect virtually every cell type found in host organisms. however, myeloid cells, especially macrophages, constitute the primary cells targeted by most species of intracellular bacteria. paradoxically, macrophages possess an extensive antimicrobial arsenal and are efficient at killing microbes. in addition to their ability to detect and signal the presence of pathogens, macrophages sequester and digest microorganisms using the p ... | 2016 | 27337444 |
| presence of gas in left ventricle due to infective endocarditis. | gas in myocardium is a rare manifestation of infective endocarditis caused by gas producing bacteria. we present a case of infective endocarditis caused by citrobacter koseri initially diagnosed by computed tomography and confirmed with transesophageal echocardiogram. | 2016 | 27318588 |
| ceftazidime-avibactam versus doripenem for the treatment of complicated urinary tract infections, including acute pyelonephritis: recapture, a phase 3 randomized trial program. | the global emergence of carbapenem-resistant enterobacteriaceae highlights the urgent need to reduce carbapenem dependence. the phase 3 recapture program compared the efficacy and safety of ceftazidime-avibactam and doripenem in patients with complicated urinary tract infection (cuti), including acute pyelonephritis. | 2016 | 27313268 |
| recent advances in screening of anti-campylobacter activity in probiotics for use in poultry. | campylobacteriosis is the most common cause of bacterial gastroenteritis worldwide. campylobacter species involved in this infection usually include the thermotolerant species campylobacter jejuni. the major reservoir for c. jejuni leading to human infections is commercial broiler chickens. poultry flocks are frequently colonized by c. jejuni without any apparent symptoms. risk assessment analyses have identified the handling and consumption of poultry meat as one of the most important sources o ... | 2016 | 27303366 |
| occurrence of potential bacterial pathogens and their antimicrobial susceptibility patterns isolated from herbal medicinal products sold in different markets of gondar town, northwest ethiopia. | background. the world health organization estimates that about 80% of the world's population uses herbal medicine to treat various illnesses as means of primary healthcare. however, during preparation, herbal plants may be exposed to contamination by potential pathogens, and this may lead to infections. the aim of this study was to determine bacterial contamination of herbal medicinal products and to assess the antibiotic susceptibility pattern of the isolated bacteria. methods. a cross-sectiona ... | 2016 | 27299154 |
| early-onset pneumonia in non-traumatic out-of-hospital cardiac arrest patients with special focus on prehospital airway management. | background more than half of all non-traumatic out-of-hospital cardiac arrest (ohca) patients die in the hospital. early-onset pneumonia (eop) has been described as one of the most common complications after successful cardiopulmonary resuscitation. however, the expanded use of alternative airway devices (aad) might influence the incidence of eop following ohca. material and methods we analyzed data from all ohca patients admitted to our hospital between 1 january 2008 and 31 december 2014. eop ... | 2016 | 27295123 |
| vector potential of blattella germanica (l.) (dictyoptera: blattidae) for medically important bacteria at food handling establishments in jimma town, southwest ethiopia. | cockroaches have been regarded as possible vectors of human enteropathogens. their presence and crawl particularly in food handling establishments could be risky for human health. therefore, this study was done to determine the vector potential of cockroach for medically important bacterial pathogens in restaurants and cafeterias. a cross-sectional study was conducted on cockroaches from restaurants and cafeterias in jimma town from may to september 2014. standard taxonomic keys and microbiologi ... | 2016 | 27294115 |
| thigh abscess and necrotizing fasciitis following an inside-out transobturator tape intervention: a case report. | tension-free vaginal transobturator tapes are used worldwide in the treatment of urinary incontinence in women. very few severe complications have been described following this procedure, with no standard treatment yet established. | 2016 | 27256334 |
| acute rhinosinusitis and intraorbital abscess caused by citrobacter koseri infection. | 2016 | 27245934 | |
| clinical impact of maldi-tof ms identification and rapid susceptibility testing on adequate antimicrobial treatment in sepsis with positive blood cultures. | shortening the turn-around time (tat) of positive blood culture (bc) identification (id) and susceptibility results is essential to optimize antimicrobial treatment in patients with sepsis. we aimed to evaluate the impact on antimicrobial prescription of a modified workflow of positive bcs providing id and partial susceptibility results for enterobacteriaceae (eb), pseudomonas aeruginosa and staphylococcus aureus on the day of bc positivity detection. this study was divided into a pre-interventi ... | 2016 | 27228001 |
| evaluation of heavy metal removal from wastewater in a modified packed bed biofilm reactor. | for the effective application of a modified packed bed biofilm reactor (pbbr) in wastewater industrial practice, it is essential to distinguish the tolerance of the system for heavy metals removal. the industrial contamination of wastewater from various sources (e.g. zn, cu, cd and ni) was studied to assess the impacts on a pbbr. this biological system was examined by evaluating the tolerance of different strengths of composite heavy metals at the optimum hydraulic retention time (hrt) of 2 hour ... | 2016 | 27186636 |
| isolation and characterization of escherichia coli sequence type 131 and other antimicrobial-resistant gram-negative bacilli from clinical stool samples from veterans. | emerging multidrug-resistant (mdr) gram-negative bacilli (gnb), including escherichia coli sequence type 131 (st131) and its resistance-associated h30 subclone, constitute an ever-growing public health threat. their reservoirs and transmission pathways are incompletely defined. to assess diarrheal stools as a potential reservoir for st131-h30 and other mdr gnb, we cultured 100 clinical stool samples from a veterans affairs medical center clinical laboratory (october to december 2011) for fluoroq ... | 2016 | 27185805 |
| [prevalence of sensitization to fungi in patients with respiratory allergy]. | as part of the etiology of respiratory allergy we have genetics, prenatal factors and sensitivity to various airborne allergens, between these fungi are found. relationship has been found between sensitization to fungal in skin tests and allergy pathogenesis and aggravation. there is a few literature in mexico and in the north of the country it is lacking regarding this problem. | 2016 | 27174757 |
| [prevalence of sensitization to allergens in school children with asthma residents from guadalajara metropolitan area]. | allergic sensitization is dependent on the geographical and climatic conditions in each region; therefore, identify agents most commonly sensitized children with asthma is important for planning prevention measures. | 2016 | 27174756 |
| epidemiology and resistance patterns of bacterial and fungal colonization of biliary plastic stents: a prospective cohort study. | plastic stents used for the treatment of biliary obstruction will become occluded over time due to microbial colonization and formation of biofilms. treatment of stent-associated cholangitis is often not effective because of inappropriate use of antimicrobial agents or antimicrobial resistance. we aimed to assess the current bacterial and fungal etiology of stent-associated biofilms, with particular emphasis on antimicrobial resistance. | 2016 | 27171497 |
| global dissemination of blakpc into bacterial species beyond klebsiella pneumoniae and in vitro susceptibility to ceftazidime-avibactam and aztreonam-avibactam. | the klebsiella pneumoniae carbapenemase (kpc), first described in the united states in 1996, is now a widespread global problem in several gram-negative species. a worldwide surveillance study collected gram-negative pathogens from 202 global sites in 40 countries during 2012 to 2014 and determined susceptibility to β-lactams and other class agents by broth microdilution testing. molecular mechanisms of β-lactam resistance among carbapenem-nonsusceptible enterobacteriaceae and pseudomonas aerugi ... | 2016 | 27161636 |
| antimicrobial activities of ceftazidime-avibactam and comparator agents against gram-negative organisms isolated from patients with urinary tract infections in u.s. medical centers, 2012 to 2014. | a total of 7,272 unique patient clinical isolates were collected from 71 u.s. medical centers from patients with urinary tract infections in 2012 to 2014 and tested for susceptibility to ceftazidime-avibactam and comparators by broth microdilution methods. ceftazidime-avibactam inhibited >99.9% of all enterobacteriaceae at the susceptible breakpoint of ≤8 μg/ml (there were only three nonsusceptible strains). ceftazidime-avibactam was also active against pseudomonas aeruginosa isolates (mic50, 2 ... | 2016 | 27114273 |
| noncanonical dna-binding mode of repressor and its disassembly by antirepressor. | dna-binding repressors are involved in transcriptional repression in many organisms. disabling a repressor is a crucial step in activating expression of desired genes. thus, several mechanisms have been identified for the removal of a stably bound repressor (rep) from the operator. here, we describe an uncharacterized mechanism of noncanonical dna binding and induction by a rep from the temperate salmonella phage spc32h; this mechanism was revealed using the crystal structures of homotetrameric ... | 2016 | 27099293 |
| noma: a disease of poverty presenting at an urban hospital in the united states. | 2014 | 27075129 | |
| noma: a disease of poverty presenting at an urban hospital in the united states. | 2014 | 27075129 | |
| post-stroke bacteriuria among stroke patients attending a physiotherapy clinic in ghana: a cross-sectional study. | infections are known to be a major complication of stroke patients. in this study, we evaluated the risk of community-acquired bacteriuria among stroke patients, the associated factors, and the causative organisms. | 2016 | 27051289 |
| global rna recognition patterns of post-transcriptional regulators hfq and csra revealed by uv crosslinking in vivo. | the molecular roles of many rna-binding proteins in bacterial post-transcriptional gene regulation are not well understood. approaches combining in vivo uv crosslinking with rna deep sequencing (clip-seq) have begun to revolutionize the transcriptome-wide mapping of eukaryotic rna-binding protein target sites. we have applied clip-seq to chart the target landscape of two major bacterial post-transcriptional regulators, hfq and csra, in the model pathogen salmonella typhimurium. by detecting bind ... | 2016 | 27044921 |
| fatal transfusion-transmitted infection due to citrobacter koseri. | transfusion-transmitted bacterial infection (ttbi) is still one of the most feared complications of blood transfusion. | 2016 | 27040329 |
| genomic insights into a new citrobacter koseri strain revealed gene exchanges with the virulence-associated yersinia pestis ppcp1 plasmid. | the history of infectious diseases raised the plague as one of the most devastating for human beings. far too often considered an ancient disease, the frequent resurgence of the plague has led to consider it as a reemerging disease in madagascar, algeria, libya, and congo. the genetic factors associated with the pathogenicity of yersinia pestis, the causative agent of the plague, involve the acquisition of the ppcp1 plasmid that promotes host invasion through the expression of the virulence fact ... | 2016 | 27014253 |
| insights into newer antimicrobial agents against gram-negative bacteria. | currently, drug resistance, especially against cephalosporins and carbapenems, among gram-negative bacteria is an important challenge, which is further enhanced by the limited availability of drugs against these bugs. there are certain antibiotics (colistin, fosfomycin, temocillin, and rifampicin) that have been revived from the past to tackle the menace of superbugs, including members of enterobacteriaceae, acinetobacter species, and pseudomonas species. very few newer antibiotics have been add ... | 2016 | 27013887 |
| cefepime shows good efficacy and no antibiotic resistance in pneumonia caused by serratia marcescens and proteus mirabilis - an observational study. | many antibiotics have no effect on gram-positive and gram-negative microbes, which necessitates the prescription of broad-spectrum antimicrobial agents that can lead to increased risk of antibiotic resistance. these pathogens constitute a further threat because they are also resistant to numerous beta-lactam antibiotics, as well as other antibiotic groups. this study retrospectively investigates antimicrobial resistance in hospitalized patients suffering from pneumonia triggered by gram-negative ... | 2016 | 27004519 |
| evaluation of the septifast mgrade test on standard care wards--a cohort study. | the immediate need for appropriate antimicrobial therapy in septic patients requires the detection of the causative pathogen in a timely and reliable manner. in this study, the real-time pcr septifast mgrade test was evaluated in adult patients meeting the systemic inflammatory response syndrome (sirs) criteria that were treated at standard care wards. | 2016 | 26986826 |
| pancreatic panniculitis complicated by infection with corynebacterium tuberculostearicum: a case report. | we present a case of pancreatic panniculitis in a patient with alcohol abuse where corynebacterium tuberculostearicum was isolated from a pannicular nodule on the crus. the patient was started on linezolid treatment leading to regression of the patient's symptoms. upon discontinuation of linezolid treatment progression of the skin symptoms progressed. | 2014 | 26955524 |
| microbiology of primary acquired nasolacrimal duct obstruction: simple epiphora, acute dacryocystitis, and chronic dacryocystitis. | the aim of this study was to determine the microbiology of primary acquired nasolacrimal duct obstruction (pando) and its antimicrobial susceptibilities. | 2016 | 26955261 |
| phenotypic detection and molecular characterization of beta-lactamase genes among citrobacter species in a tertiary care hospital. | to examine the distribution, emergence, and spread of genes encoding beta-lactamase resistance in citrobacter species isolated from hospitalized patients in a tertiary care hospital. | 2016 | 26952135 |
| [identification of microorganisms related to chronic rhinosinusitis in adult patients with variable common immunodeficiency]. | the prevalence of chronic rhinosinusitis in adult patients with common variable immunodeficiency (cvid) is 52%. the patients with cvid show higher incidence of chronic rhinosinusitis, which is an inflammatory disease that affects the lining of one or more paranasal sinuses and nasal cavity. | 2016 | 26943827 |
| in vitro susceptibility to ceftazidime-avibactam of carbapenem-nonsusceptible enterobacteriaceae isolates collected during the inform global surveillance study (2012 to 2014). | the activity of ceftazidime-avibactam was assessed against 961 isolates of meropenem-nonsusceptible enterobacteriaceae most meropenem-nonsusceptible metallo-β-lactamase (mbl)-negative isolates (97.7%) were susceptible to ceftazidime-avibactam. isolates that carried kpc or oxa-48-like β-lactamases, both alone and in combination with extended-spectrum β-lactamases (esbls) and/or ampc β-lactamases, were 98.7% and 98.5% susceptible to ceftazidime-avibactam, respectively. meropenem-nonsusceptible, ca ... | 2016 | 26926648 |
| development of a flow cytometry-based method for rapid detection of escherichia coli and shigella spp. using an oligonucleotide probe. | standard methods to detect escherichia coli contamination in food use the polymerase chain reaction (pcr) and agar culture plates. these methods require multiple incubation steps and take a long time to results. an improved rapid flow-cytometry based detection method was developed, using a fluorescence-labeled oligonucleotide probe specifically binding a16s rrna sequence. the method positively detected 51 e. coli isolates as well as 4 shigella species. all 27 non-e. coli strains tested gave nega ... | 2016 | 26913737 |
| matrix-assisted laser desorption ionization-time of flight mass spectrometry accelerates pathogen identification and may confer benefit in the outcome of peritoneal dialysis-related peritonitis. | matrix-assisted laser desorption ionization-time of flight mass spectrometry (maldi-tof ms) and conventional standard methods were compared for time to pathogen identification and impact on clinical outcomes in peritoneal dialysis-related peritonitis patients. the maldi-tof ms method identified the causative microorganisms earlier (average time saved, 64 h for all pathogens), and patients had a shorter hospital stay (mean ± standard deviation, 5.2 ± 4.8 days versus 8.2 ± 4.5 days, p = 0.001). | 2016 | 26912750 |
| review on the antimicrobial resistance of pathogens from tracheal and endotracheal aspirates of patients with clinical manifestations of pneumonia in bacolod city in 2013. | microbiological content specifically bacterial and fungal etiologies from tracheal aspirates in a tertiary hospital in bacolod city was reviewed for baseline information. a total of 130 tracheal aspirates were subjected for culture to isolate and identify the pathogen and determine their susceptibilities to various antibiotics. productions of certain enzymes responsible for antibiotic resistance like esbl (extended spectrum beta-lactamase), metallo-β-lactamase, and carbapenemase were also studie ... | 2015 | 26904750 |
| the basics of bacteriuria: strategies of microbes for persistence in urine. | bacteriuria, the presence of bacteria in urine, is associated with asymptomatic, as well as symptomatic, urinary tract infection (uti). bacteriuria underpins some of the dynamics of microbial colonization of the urinary tract, and probably impacts the progression and persistence of infection in some individuals. recent molecular discoveries in vitro have elucidated how some key bacterial traits can enable organisms to survive and grow in human urine as a means of microbial fitness adaptation for ... | 2016 | 26904513 |
| evaluation of the check-points check mdr ct103 and ct103 xl microarray kits by use of preparatory rapid cell lysis. | using a rapid bacterial lysis method, the check mdr ct103 and ct103 xl microarrays demonstrated accuracies of 98.1% and 94.2%, respectively, for detection of known resistance genes in 108 multidrug-resistant gram-negative bacilli. in 45 isolates, 49 previously unrecognized extended-spectrum β-lactamase or plasmid ampc targets were detected and confirmed by conventional pcr. | 2016 | 26888905 |
| restriction profiling of 23s microheterogenic ribosomal repeats for detection and characterizing of e. coli and their clonal, pathogenic, and phylogroups. | correlating ribosomal microheterogenicity with unique restriction profiles can prove to be an efficacious and cost-effective approach compared with sequencing for microbial identification. an attempt to peruse restriction profiling of 23s ribosomal assemblage was ventured; digestion patterns with bfa i discriminated e. coli from its colony morphovars, while hae iii profiles assisted in establishing distinct clonal groups. among the gene pool of 399 ribosomal sequences extrapolated from 57 e. col ... | 2015 | 26885397 |
| persistence of nasal colonization with human pathogenic bacteria and associated antimicrobial resistance in the german general population. | the nares represent an important bacterial reservoir for endogenous infections. this study aimed to assess the prevalence of nasal colonization by different important pathogens, the associated antimicrobial susceptibility and risk factors. we performed a prospective cohort study among 1878 nonhospitalized volunteers recruited from the general population in germany. participants provided nasal swabs at three time points (each separated by 4-6 months). staphylococcus aureus, enterobacteriaceae and ... | 2015 | 26862431 |
| persistence of nasal colonization with human pathogenic bacteria and associated antimicrobial resistance in the german general population. | the nares represent an important bacterial reservoir for endogenous infections. this study aimed to assess the prevalence of nasal colonization by different important pathogens, the associated antimicrobial susceptibility and risk factors. we performed a prospective cohort study among 1878 nonhospitalized volunteers recruited from the general population in germany. participants provided nasal swabs at three time points (each separated by 4-6 months). staphylococcus aureus, enterobacteriaceae and ... | 2015 | 26862431 |
| antimicrobial activities of ceftaroline and comparator agents against bacterial organisms causing bacteremia in patients with skin and skin structure infections in u.s. medical centers, 2008 to 2014. | we evaluated the antimicrobial susceptibility of 1,454 organisms consecutively collected from patients with bacteremia associated with skin and skin structure infections. the most common organisms obtained werestaphylococcus aureus(670 organisms [46.1%]),escherichia coli(200 organisms [13.8%]), β-hemolytic streptococci (βhs) (138 organisms [9.5%]), andklebsiella pneumoniae(109 organisms [7.5%]). the susceptibility rates for ceftaroline were 97.9% fors. aureus(95.9% among methicillin-resistants. ... | 2016 | 26856825 |
| differences in the pharmacodynamics of ceftaroline against different species of enterobacteriaceae studied in an in vitro pharmacokinetic model of infection. | dose-ranging experiments were performed to study the pharmacodynamics of ceftaroline against enterobacteriaceae. | 2016 | 26846209 |
| prevalence of urinary tract infection and antimicrobial susceptibility among diabetic patients with controlled and uncontrolled glycemia in kuwait. | diabetic patients have higher risk of urinary tract infection (uti). in the present study, we investigated the impact of glycemic control in diabetic patients on uti prevalence, type of strains, and their antimicrobial drugs susceptibility. this study was conducted on urine samples from 722 adult diabetic patients from which 252 (35%) samples were positive for uropathogens. most uti cases occurred in the uncontrolled glycemic group (197 patients) versus 55 patients with controlled glycemia. high ... | 2015 | 26844231 |
| prevalence of urinary tract infection and antimicrobial susceptibility among diabetic patients with controlled and uncontrolled glycemia in kuwait. | diabetic patients have higher risk of urinary tract infection (uti). in the present study, we investigated the impact of glycemic control in diabetic patients on uti prevalence, type of strains, and their antimicrobial drugs susceptibility. this study was conducted on urine samples from 722 adult diabetic patients from which 252 (35%) samples were positive for uropathogens. most uti cases occurred in the uncontrolled glycemic group (197 patients) versus 55 patients with controlled glycemia. high ... | 2015 | 26844231 |
| microbial yield from physiotherapy assisted sputum production in respiratory outpatients. | sputum is a key diagnostic sample for those with chronic chest conditions including chronic and allergic aspergillus-related disease, but often not obtained in clinic. the objective of this study was to evaluate physiotherapeutic interventions to obtain sputum from those not able to spontaneously produce and the subsequent microbiological result. | 2016 | 26831895 |
| a multi-substrate approach for functional metagenomics-based screening for (hemi)cellulases in two wheat straw-degrading microbial consortia unveils novel thermoalkaliphilic enzymes. | functional metagenomics is a promising strategy for the exploration of the biocatalytic potential of microbiomes in order to uncover novel enzymes for industrial processes (e.g. biorefining or bleaching pulp). most current methodologies used to screen for enzymes involved in plant biomass degradation are based on the use of single substrates. moreover, highly diverse environments are used as metagenomic sources. however, such methods suffer from low hit rates of positive clones and hence the dis ... | 2016 | 26822785 |