| proteus mirabilis | 80 | species | bacteria | bacteria | 584 |
| serratia marcescens | 100 | species | bacteria | bacteria | 615 |
| shigella dysenteriae | 80 | species | bacteria | bacteria | 622 |
| shigella flexneri | 142 | species | bacteria | bacteria | 623 |
| yersinia enterocolitica | 126 | species | bacteria | bacteria | 630 |
| yersinia pestis | 105 | species | bacteria | bacteria | 632 |
| yersinia pseudotuberculosis | 99 | species | bacteria | bacteria | 633 |
| aeromonas hydrophila | 89 | species | bacteria | bacteria | 644 |
| vibrio cholerae | 145 | species | bacteria | bacteria | 666 |
| aggregatibacter actinomycetemcomitans | 101 | species | bacteria | bacteria | 714 |
| actinobacillus pleuropneumoniae | 59 | species | bacteria | bacteria | 715 |
| haemophilus influenzae | 148 | species | bacteria | bacteria | 727 |
| pasteurella multocida | 65 | species | bacteria | bacteria | 747 |
| coxiella burnetii | 67 | species | bacteria | bacteria | 777 |
| chlamydia trachomatis | 129 | species | bacteria | bacteria | 813 |
| bacteroides fragilis | 97 | species | bacteria | bacteria | 817 |
| porphyromonas gingivalis | 113 | species | bacteria | bacteria | 837 |
| anaplasma phagocytophilum | 62 | species | bacteria | bacteria | 948 |
| staphylococcus aureus | 271 | species | bacteria | bacteria | 1280 |
| staphylococcus epidermidis | 114 | species | bacteria | bacteria | 1282 |
| streptococcus mutans | 104 | species | bacteria | bacteria | 1309 |
| streptococcus agalactiae | 62 | species | bacteria | bacteria | 1311 |
| streptococcus pneumoniae | 199 | species | bacteria | bacteria | 1313 |
| streptococcus pyogenes | 113 | species | bacteria | bacteria | 1314 |
| enterococcus faecalis | 132 | species | bacteria | bacteria | 1351 |
| enterococcus faecium | 116 | species | bacteria | bacteria | 1352 |
| enterococcus hirae | 63 | species | bacteria | bacteria | 1354 |
| bacillus anthracis | 122 | species | bacteria | bacteria | 1392 |
| bacillus cereus | 111 | species | bacteria | bacteria | 1396 |
| bacillus licheniformis | 78 | species | bacteria | bacteria | 1402 |
| bacillus subtilis | 219 | species | bacteria | bacteria | 1423 |
| clostridium botulinum | 106 | species | bacteria | bacteria | 1491 |
| clostridioides difficile | 127 | species | bacteria | bacteria | 1496 |
| clostridium perfringens | 101 | species | bacteria | bacteria | 1502 |
| listeria monocytogenes | 207 | species | bacteria | bacteria | 1639 |
| mycobacterium avium | 125 | species | bacteria | bacteria | 1764 |
| mycobacterium bovis | 132 | species | bacteria | bacteria | 1765 |
| mycobacterium avium subsp. paratuberculosis | 79 | subspecies | bacteria | bacteria | 1770 |
| mycobacterium tuberculosis | 238 | species | bacteria | bacteria | 1773 |
| mycoplasma genitalium | 78 | species | bacteria | bacteria | 2097 |
| mycoplasma pneumoniae | 93 | species | bacteria | bacteria | 2104 |
| salmonella enterica | 107 | species | bacteria | bacteria | 28901 |
| mycobacterium avium complex | 95 | species | bacteria | bacteria | 37162 |
| bartonella henselae | 77 | species | bacteria | bacteria | 38323 |
| stenotrophomonas maltophilia | 80 | species | bacteria | bacteria | 40324 |
| mannheimia haemolytica | 67 | species | bacteria | bacteria | 75985 |
| escherichia coli o157:h7 | 138 | no rank | bacteria | bacteria | 83334 |
| chlamydia psittaci | 63 | species | bacteria | bacteria | 83554 |
| chlamydia abortus | 63 | species | bacteria | bacteria | 83555 |
| chlamydia pneumoniae | 143 | species | bacteria | bacteria | 83558 |
| salmonella enterica subsp. enterica serovar typhimurium | 77 | no rank | bacteria | bacteria | 90371 |
| salmonella enterica subsp. enterica serovar enteritidis | 87 | no rank | bacteria | bacteria | 149539 |
| bovine spongiform encephalopathy agent | 101 | species | | | |
| scrapie agent | 79 | species | | | |