| salmonella enterica subsp. enterica serovar enteritidis | 87 | no rank | bacteria | bacteria | 149539 |
| rhizopus oryzae | 86 | species | plants | fungi | 64495 |
| salmonella enterica subsp. enterica serovar typhi | 85 | no rank | bacteria | bacteria | 90370 |
| japanese encephalitis virus | 83 | species | viruses | viruses | 11072 |
| yellow fever virus | 83 | species | viruses | viruses | 11089 |
| human parvovirus b19 | 81 | species | viruses | viruses | 10798 |
| proteus mirabilis | 80 | species | bacteria | bacteria | 584 |
| shigella dysenteriae | 80 | species | bacteria | bacteria | 622 |
| mycobacterium smegmatis | 80 | species | bacteria | bacteria | 1772 |
| plasmodium vivax | 80 | species | invertebrates | protozoa | 5855 |
| variola virus | 80 | species | viruses | viruses | 10255 |
| stenotrophomonas maltophilia | 80 | species | bacteria | bacteria | 40324 |
| bacillus licheniformis | 78 | species | bacteria | bacteria | 1402 |
| mycoplasma genitalium | 78 | species | bacteria | bacteria | 2097 |
| acanthamoeba castellanii | 78 | species | invertebrates | protozoa | 5755 |
| trichinella spiralis | 78 | species | invertebrates | helminths | 6334 |
| acinetobacter calcoaceticus | 77 | species | bacteria | bacteria | 471 |
| propionibacterium acnes | 77 | species | bacteria | bacteria | 1747 |
| bartonella henselae | 77 | species | bacteria | bacteria | 38323 |
| salmonella enterica subsp. enterica serovar typhimurium | 77 | no rank | bacteria | bacteria | 90371 |
| pseudomonas stutzeri | 76 | species | bacteria | bacteria | 316 |
| candida tropicalis | 76 | species | plants | fungi | 5482 |
| [enterobacter] aerogenes | 75 | species | bacteria | bacteria | 548 |
| francisella tularensis | 74 | species | bacteria | bacteria | 263 |
| vibrio parahaemolyticus | 74 | species | bacteria | bacteria | 670 |
| streptococcus sanguinis | 74 | species | bacteria | bacteria | 1305 |
| penicillium chrysogenum | 74 | species | plants | fungi | 5076 |
| schizophyllum commune | 74 | species | plants | fungi | 5334 |
| haemonchus contortus | 74 | species | invertebrates | helminths | 6289 |
| vibrio vulnificus | 73 | species | bacteria | bacteria | 672 |
| norwalk virus | 73 | species | viruses | viruses | 11983 |
| fusarium solani | 73 | species | plants | fungi | 169388 |
| histoplasma capsulatum | 72 | species | plants | fungi | 5037 |
| cowpox virus | 71 | species | viruses | viruses | 10243 |
| citrobacter freundii | 70 | species | bacteria | bacteria | 546 |
| ureaplasma urealyticum | 70 | species | bacteria | bacteria | 2130 |
| bacillus circulans | 69 | species | bacteria | bacteria | 1397 |
| leishmania mexicana | 69 | species | invertebrates | protozoa | 5665 |
| ascaris lumbricoides | 69 | species | invertebrates | helminths | 6252 |
| gb virus c | 69 | species | viruses | viruses | 54290 |
| candida parapsilosis | 68 | species | plants | fungi | 5480 |
| fasciola hepatica | 68 | species | invertebrates | helminths | 6192 |
| brugia malayi | 68 | species | invertebrates | helminths | 6279 |
| coxiella burnetii | 67 | species | bacteria | bacteria | 777 |
| pichia kudriavzevii | 67 | species | plants | fungi | 4909 |
| aspergillus oryzae | 67 | species | plants | fungi | 5062 |
| candida rugosa | 67 | species | plants | fungi | 5481 |
| mannheimia haemolytica | 67 | species | bacteria | bacteria | 75985 |
| klebsiella oxytoca | 66 | species | bacteria | bacteria | 571 |
| human respiratory syncytial virus | 66 | species | viruses | viruses | 11250 |
| campylobacter coli | 65 | species | bacteria | bacteria | 195 |
| pasteurella multocida | 65 | species | bacteria | bacteria | 747 |
| ascaris suum | 65 | species | invertebrates | helminths | 6253 |
| borna disease virus | 65 | species | viruses | viruses | 12455 |
| prevotella intermedia | 65 | species | bacteria | bacteria | 28131 |
| corynebacterium diphtheriae | 64 | species | bacteria | bacteria | 1717 |
| trichoderma viride | 64 | species | plants | fungi | 5547 |
| plasmodium knowlesi | 64 | species | invertebrates | protozoa | 5850 |
| onchocerca volvulus | 64 | species | invertebrates | helminths | 6282 |
| rubella virus | 64 | species | viruses | viruses | 11041 |
| pantoea agglomerans | 63 | species | bacteria | bacteria | 549 |
| enterococcus hirae | 63 | species | bacteria | bacteria | 1354 |
| yarrowia lipolytica | 63 | species | plants | fungi | 4952 |
| chlamydia psittaci | 63 | species | bacteria | bacteria | 83554 |
| anaplasma phagocytophilum | 62 | species | bacteria | bacteria | 948 |
| streptococcus agalactiae | 62 | species | bacteria | bacteria | 1311 |
| fusobacterium nucleatum | 61 | species | bacteria | bacteria | 851 |
| streptococcus gordonii | 61 | species | bacteria | bacteria | 1302 |
| coprinopsis cinerea | 61 | species | plants | fungi | 5346 |
| echinococcus granulosus | 61 | species | invertebrates | helminths | 6210 |
| mumps virus | 61 | species | viruses | viruses | 11161 |
| hantaan virus | 61 | species | viruses | viruses | 11599 |
| burkholderia pseudomallei | 61 | species | bacteria | bacteria | 28450 |
| lysinibacillus sphaericus | 60 | species | bacteria | bacteria | 1421 |
| mycobacterium fortuitum | 60 | species | bacteria | bacteria | 1766 |
| actinobacillus pleuropneumoniae | 59 | species | bacteria | bacteria | 715 |
| rhizomucor miehei | 59 | species | plants | fungi | 4839 |
| wolinella succinogenes | 58 | species | bacteria | bacteria | 844 |
| mycobacterium chelonae | 58 | species | bacteria | bacteria | 1774 |
| encephalitozoon cuniculi | 58 | species | plants | fungi | 6035 |
| rotavirus a | 58 | species | viruses | viruses | 28875 |
| campylobacter fetus | 57 | species | bacteria | bacteria | 196 |
| [haemophilus] ducreyi | 57 | species | bacteria | bacteria | 730 |
| brevibacillus brevis | 57 | species | bacteria | bacteria | 1393 |
| rhodococcus rhodochrous | 57 | species | bacteria | bacteria | 1829 |
| leishmania infantum | 57 | species | invertebrates | protozoa | 5671 |
| trichostrongylus colubriformis | 57 | species | invertebrates | helminths | 6319 |
| influenza b virus | 57 | species | viruses | viruses | 11520 |
| vibrio alginolyticus | 56 | species | bacteria | bacteria | 663 |
| ehrlichia chaffeensis | 56 | species | bacteria | bacteria | 945 |
| alternaria alternata | 56 | species | plants | fungi | 5599 |
| schistosoma haematobium | 56 | species | invertebrates | helminths | 6185 |
| sphingomonas paucimobilis | 56 | species | bacteria | bacteria | 13689 |
| tannerella forsythia | 56 | species | bacteria | bacteria | 28112 |
| bordetella bronchiseptica | 55 | species | bacteria | bacteria | 518 |
| taenia solium | 55 | species | invertebrates | helminths | 6204 |
| tick-borne encephalitis virus | 55 | species | viruses | viruses | 11084 |
| brevundimonas diminuta | 54 | species | bacteria | bacteria | 293 |
| bartonella quintana | 54 | species | bacteria | bacteria | 803 |
| mycoplasma hominis | 54 | species | bacteria | bacteria | 2098 |