| onchocerca volvulus | 64 | species | invertebrates | helminths | 6282 |
| dirofilaria immitis | 51 | species | invertebrates | helminths | 6287 |
| haemonchus contortus | 74 | species | invertebrates | helminths | 6289 |
| wuchereria bancrofti | 52 | species | invertebrates | helminths | 6293 |
| angiostrongylus cantonensis | 35 | species | invertebrates | helminths | 6313 |
| ostertagia ostertagi | 46 | species | invertebrates | helminths | 6317 |
| trichostrongylus colubriformis | 57 | species | invertebrates | helminths | 6319 |
| trichinella spiralis | 78 | species | invertebrates | helminths | 6334 |
| trichinella nativa | 22 | species | invertebrates | helminths | 6335 |
| trichinella nelsoni | 14 | species | invertebrates | helminths | 6336 |
| trichinella pseudospiralis | 28 | species | invertebrates | helminths | 6337 |
| loa loa | 30 | species | invertebrates | helminths | 7209 |
| moniliformis moniliformis | 14 | species | invertebrates | helminths | 10237 |
| cowpox virus | 71 | species | viruses | viruses | 10243 |
| monkeypox virus | 35 | species | viruses | viruses | 10244 |
| variola virus | 80 | species | viruses | viruses | 10255 |
| orf virus | 38 | species | viruses | viruses | 10258 |
| molluscum contagiosum virus | 36 | species | viruses | viruses | 10279 |
| human herpesvirus 1 | 171 | species | viruses | viruses | 10298 |
| human herpesvirus 2 | 96 | species | viruses | viruses | 10310 |
| macacine herpesvirus 1 | 25 | species | viruses | viruses | 10325 |
| human herpesvirus 3 | 113 | species | viruses | viruses | 10335 |
| suid herpesvirus 1 | 106 | species | viruses | viruses | 10345 |
| saimiriine herpesvirus 1 | 9 | species | viruses | viruses | 10353 |
| human herpesvirus 5 | 159 | species | viruses | viruses | 10359 |
| human herpesvirus 6 | 94 | species | viruses | viruses | 10368 |
| human herpesvirus 7 | 48 | species | viruses | viruses | 10372 |
| human herpesvirus 4 | 257 | species | viruses | viruses | 10376 |
| hepatitis b virus | 246 | species | viruses | viruses | 10407 |
| human papillomavirus | 235 | species | viruses | viruses | 10566 |
| jc polyomavirus | 89 | species | viruses | viruses | 10632 |
| human parvovirus b19 | 81 | species | viruses | viruses | 10798 |
| barmah forest virus | 22 | species | viruses | viruses | 11020 |
| eastern equine encephalitis virus | 29 | species | viruses | viruses | 11021 |
| ross river virus | 48 | species | viruses | viruses | 11029 |
| semliki forest virus | 119 | species | viruses | viruses | 11033 |
| sindbis virus | 107 | species | viruses | viruses | 11034 |
| venezuelan equine encephalitis virus | 54 | species | viruses | viruses | 11036 |
| western equine encephalitis virus | 30 | species | viruses | viruses | 11039 |
| rubella virus | 64 | species | viruses | viruses | 11041 |
| japanese encephalitis virus | 83 | species | viruses | viruses | 11072 |
| murray valley encephalitis virus | 28 | species | viruses | viruses | 11079 |
| st. louis encephalitis virus | 38 | species | viruses | viruses | 11080 |
| west nile virus | 97 | species | viruses | viruses | 11082 |
| powassan virus | 11 | species | viruses | viruses | 11083 |
| tick-borne encephalitis virus | 55 | species | viruses | viruses | 11084 |
| louping ill virus | 14 | species | viruses | viruses | 11086 |
| yellow fever virus | 83 | species | viruses | viruses | 11089 |
| hepatitis c virus | 289 | species | viruses | viruses | 11103 |
| human coronavirus 229e | 39 | species | viruses | viruses | 11137 |
| mumps virus | 61 | species | viruses | viruses | 11161 |
| newcastle disease virus | 93 | species | viruses | viruses | 11176 |
| human parainfluenza virus 2 | 37 | species | viruses | viruses | 11212 |
| human parainfluenza virus 3 | 51 | species | viruses | viruses | 11216 |
| measles virus | 119 | species | viruses | viruses | 11234 |
| human respiratory syncytial virus | 66 | species | viruses | viruses | 11250 |
| chandipura virus | 10 | species | viruses | viruses | 11272 |
| piry virus | 7 | species | viruses | viruses | 11274 |
| vesicular stomatitis virus | 177 | species | viruses | viruses | 11276 |
| rabies virus | 96 | species | viruses | viruses | 11292 |
| bovine ephemeral fever virus | 14 | species | viruses | viruses | 11303 |
| dhori virus | 24 | species | viruses | viruses | 11318 |
| influenza a virus | 135 | species | viruses | viruses | 11320 |
| influenza b virus | 57 | species | viruses | viruses | 11520 |
| influenza c virus | 48 | species | viruses | viruses | 11552 |
| thogoto virus | 37 | species | viruses | viruses | 11569 |
| punta toro virus | 28 | species | viruses | viruses | 11587 |
| rift valley fever virus | 41 | species | viruses | viruses | 11588 |
| dugbe virus | 10 | species | viruses | viruses | 11595 |
| hantaan virus | 61 | species | viruses | viruses | 11599 |
| seoul virus | 27 | species | viruses | viruses | 11608 |
| junin mammarenavirus | 31 | species | viruses | viruses | 11619 |
| lassa mammarenavirus | 41 | species | viruses | viruses | 11620 |
| lymphocytic choriomeningitis mammarenavirus | 148 | species | viruses | viruses | 11623 |
| machupo mammarenavirus | 18 | species | viruses | viruses | 11628 |
| human immunodeficiency virus 1 | 410 | species | viruses | viruses | 11676 |
| human immunodeficiency virus 2 | 399 | species | viruses | viruses | 11709 |
| human t-lymphotropic virus 1 | 137 | no rank | viruses | viruses | 11908 |
| norwalk virus | 73 | species | viruses | viruses | 11983 |
| human parechovirus 1 | 29 | no rank | viruses | viruses | 12063 |
| swine vesicular disease virus | 23 | no rank | viruses | viruses | 12075 |
| enterovirus d70 | 24 | no rank | viruses | viruses | 12090 |
| hepatovirus a | 95 | species | viruses | viruses | 12092 |
| encephalomyocarditis virus | 105 | no rank | viruses | viruses | 12104 |
| foot-and-mouth disease virus | 89 | species | viruses | viruses | 12110 |
| borna disease virus | 65 | species | viruses | viruses | 12455 |
| hepatitis delta virus | 89 | species | viruses | viruses | 12475 |
| dobrava-belgrade virus | 23 | species | viruses | viruses | 12506 |
| mokola virus | 26 | species | viruses | viruses | 12538 |
| omsk hemorrhagic fever virus | 8 | species | viruses | viruses | 12542 |
| dengue virus | 99 | species | viruses | viruses | 12637 |
| human parainfluenza virus 1 | 34 | species | viruses | viruses | 12730 |
| blastocystis hominis | 41 | species | plants | | 12968 |
| suttonella indologenes | 6 | species | bacteria | bacteria | 13276 |
| burkholderia mallei | 27 | species | bacteria | bacteria | 13373 |
| sphingomonas paucimobilis | 56 | species | bacteria | bacteria | 13689 |
| penicillium expansum | 46 | species | plants | fungi | 27334 |
| colletotrichum coccodes | 24 | species | plants | fungi | 27358 |
| fasciolopsis buski | 11 | species | invertebrates | helminths | 27845 |
| encephalitozoon hellem | 43 | species | plants | fungi | 27973 |