| borreliella burgdorferi | 144 | species | bacteria | bacteria | 139 |
| borrelia hermsii | 44 | species | bacteria | bacteria | 140 |
| borrelia parkeri | 13 | species | bacteria | bacteria | 141 |
| borrelia turicatae | 21 | species | bacteria | bacteria | 142 |
| treponema pallidum | 87 | species | bacteria | bacteria | 160 |
| leptospira interrogans | 49 | species | bacteria | bacteria | 173 |
| leptospira borgpetersenii | 18 | species | bacteria | bacteria | 174 |
| campylobacter coli | 65 | species | bacteria | bacteria | 195 |
| campylobacter fetus | 57 | species | bacteria | bacteria | 196 |
| campylobacter jejuni | 130 | species | bacteria | bacteria | 197 |
| campylobacter hyointestinalis | 23 | species | bacteria | bacteria | 198 |
| campylobacter concisus | 20 | species | bacteria | bacteria | 199 |
| campylobacter curvus | 11 | species | bacteria | bacteria | 200 |
| campylobacter lari | 35 | species | bacteria | bacteria | 201 |
| campylobacter rectus | 41 | species | bacteria | bacteria | 203 |
| campylobacter sputorum | 22 | species | bacteria | bacteria | 206 |
| helicobacter pylori | 246 | species | bacteria | bacteria | 210 |
| helicobacter cinaedi | 27 | species | bacteria | bacteria | 213 |
| helicobacter fennelliae | 16 | species | bacteria | bacteria | 215 |
| elizabethkingia meningoseptica | 44 | species | bacteria | bacteria | 238 |
| chryseobacterium balustinum | 10 | species | bacteria | bacteria | 246 |
| myroides odoratus | 15 | species | bacteria | bacteria | 256 |
| francisella tularensis | 74 | species | bacteria | bacteria | 263 |
| comamonas testosteroni | 50 | species | bacteria | bacteria | 285 |
| pseudomonas aeruginosa | 243 | species | bacteria | bacteria | 287 |
| burkholderia cepacia | 107 | species | bacteria | bacteria | 292 |
| brevundimonas diminuta | 54 | species | bacteria | bacteria | 293 |
| pseudomonas fluorescens | 122 | species | bacteria | bacteria | 294 |
| pseudomonas putida | 133 | species | bacteria | bacteria | 303 |
| pseudomonas stutzeri | 76 | species | bacteria | bacteria | 316 |
| ralstonia pickettii | 44 | species | bacteria | bacteria | 329 |
| pseudomonas pseudoalcaligenes | 41 | species | bacteria | bacteria | 330 |
| legionella pneumophila | 133 | species | bacteria | bacteria | 446 |
| fluoribacter bozemanae | 16 | species | bacteria | bacteria | 447 |
| legionella hackeliae | 3 | species | bacteria | bacteria | 449 |
| legionella longbeachae | 16 | species | bacteria | bacteria | 450 |
| tatlockia micdadei | 25 | species | bacteria | bacteria | 451 |
| legionella feeleii | 8 | species | bacteria | bacteria | 453 |
| legionella jordanis | 7 | species | bacteria | bacteria | 456 |
| legionella rubrilucens | 3 | species | bacteria | bacteria | 458 |
| fluoribacter dumoffii | 11 | species | bacteria | bacteria | 463 |
| fluoribacter gormanii | 14 | species | bacteria | bacteria | 464 |
| legionella maceachernii | 7 | species | bacteria | bacteria | 466 |
| acinetobacter baumannii | 88 | species | bacteria | bacteria | 470 |
| acinetobacter calcoaceticus | 77 | species | bacteria | bacteria | 471 |
| moraxella bovis | 35 | species | bacteria | bacteria | 476 |
| moraxella lacunata | 14 | species | bacteria | bacteria | 477 |
| moraxella nonliquefaciens | 16 | species | bacteria | bacteria | 478 |
| moraxella catarrhalis | 87 | species | bacteria | bacteria | 480 |
| neisseria cinerea | 17 | species | bacteria | bacteria | 483 |
| neisseria flavescens | 11 | species | bacteria | bacteria | 484 |
| neisseria gonorrhoeae | 136 | species | bacteria | bacteria | 485 |
| neisseria lactamica | 31 | species | bacteria | bacteria | 486 |
| neisseria meningitidis | 130 | species | bacteria | bacteria | 487 |
| neisseria mucosa | 14 | species | bacteria | bacteria | 488 |
| neisseria sicca | 14 | species | bacteria | bacteria | 490 |
| neisseria elongata | 9 | species | bacteria | bacteria | 495 |
| kingella denitrificans | 9 | species | bacteria | bacteria | 502 |
| kingella kingae | 27 | species | bacteria | bacteria | 504 |
| bordetella bronchiseptica | 55 | species | bacteria | bacteria | 518 |
| bordetella parapertussis | 37 | species | bacteria | bacteria | 519 |
| bordetella pertussis | 122 | species | bacteria | bacteria | 520 |
| bordetella avium | 21 | species | bacteria | bacteria | 521 |
| ochrobactrum anthropi | 32 | species | bacteria | bacteria | 529 |
| chromobacterium violaceum | 53 | species | bacteria | bacteria | 536 |
| eikenella corrodens | 47 | species | bacteria | bacteria | 539 |
| citrobacter koseri | 31 | species | bacteria | bacteria | 545 |
| citrobacter freundii | 70 | species | bacteria | bacteria | 546 |
| [enterobacter] aerogenes | 75 | species | bacteria | bacteria | 548 |
| pantoea agglomerans | 63 | species | bacteria | bacteria | 549 |
| enterobacter cloacae | 90 | species | bacteria | bacteria | 550 |
| escherichia coli | 524 | species | bacteria | bacteria | 562 |
| hafnia alvei | 39 | species | bacteria | bacteria | 569 |
| klebsiella oxytoca | 66 | species | bacteria | bacteria | 571 |
| klebsiella pneumoniae | 146 | species | bacteria | bacteria | 573 |
| kluyvera cryocrescens | 24 | species | bacteria | bacteria | 580 |
| morganella morganii | 46 | species | bacteria | bacteria | 582 |
| proteus mirabilis | 80 | species | bacteria | bacteria | 584 |
| proteus vulgaris | 53 | species | bacteria | bacteria | 585 |
| providencia rettgeri | 31 | species | bacteria | bacteria | 587 |
| providencia stuartii | 41 | species | bacteria | bacteria | 588 |
| serratia marcescens | 100 | species | bacteria | bacteria | 615 |
| serratia odorifera | 11 | species | bacteria | bacteria | 618 |
| shigella boydii | 21 | species | bacteria | bacteria | 621 |
| shigella dysenteriae | 80 | species | bacteria | bacteria | 622 |
| shigella flexneri | 142 | species | bacteria | bacteria | 623 |
| shigella sonnei | 53 | species | bacteria | bacteria | 624 |
| yersinia enterocolitica | 126 | species | bacteria | bacteria | 630 |
| yersinia intermedia | 12 | species | bacteria | bacteria | 631 |
| yersinia pestis | 105 | species | bacteria | bacteria | 632 |
| yersinia pseudotuberculosis | 99 | species | bacteria | bacteria | 633 |
| yersinia bercovieri | 5 | species | bacteria | bacteria | 634 |
| edwardsiella tarda | 37 | species | bacteria | bacteria | 636 |
| aeromonas hydrophila | 89 | species | bacteria | bacteria | 644 |
| aeromonas sobria | 34 | species | bacteria | bacteria | 646 |
| aeromonas caviae | 42 | species | bacteria | bacteria | 648 |
| aeromonas veronii | 25 | species | bacteria | bacteria | 654 |
| vibrio alginolyticus | 56 | species | bacteria | bacteria | 663 |
| vibrio cholerae | 145 | species | bacteria | bacteria | 666 |
| vibrio parahaemolyticus | 74 | species | bacteria | bacteria | 670 |