| legionella hackeliae | 3 | species | bacteria | bacteria | 449 |
| legionella rubrilucens | 3 | species | bacteria | bacteria | 458 |
| microascus cirrosus | 3 | species | plants | fungi | 5595 |
| leishmania naiffi | 3 | species | invertebrates | protozoa | 5678 |
| leptospira weilii | 3 | species | bacteria | bacteria | 28184 |
| mycobacterium shimoidei | 3 | species | bacteria | bacteria | 29313 |
| yersinia rohdei | 3 | species | bacteria | bacteria | 29485 |
| bwamba virus | 3 | species | viruses | viruses | 35310 |
| fusarium ventricosum | 3 | species | plants | fungi | 42327 |
| corynebacterium argentoratense | 3 | species | bacteria | bacteria | 42817 |
| koutango virus | 3 | species | viruses | viruses | 44025 |
| trichostrongylus probolurus | 3 | species | invertebrates | helminths | 53330 |
| edge hill virus | 3 | species | viruses | viruses | 64296 |
| moniliella suaveolens | 3 | species | plants | fungi | 64615 |
| oligella ureolytica | 3 | species | bacteria | bacteria | 90244 |
| curvularia clavata | 3 | species | plants | fungi | 95742 |
| heterophyes nocens | 3 | species | invertebrates | helminths | 104455 |
| human mastadenovirus b | 3 | species | viruses | viruses | 108098 |
| trichostrongylus capricola | 3 | species | invertebrates | helminths | 126400 |
| exserohilum longirostratum | 3 | species | plants | fungi | 132106 |
| selenomonas dianae | 3 | species | bacteria | bacteria | 135079 |
| myriodontium keratinophilum | 3 | species | plants | fungi | 150376 |
| cedecea davisae | 3 | species | bacteria | bacteria | 158484 |
| doratomyces stemonitis | 3 | species | plants | fungi | 186354 |
| caraparu virus | 3 | species | viruses | viruses | 192196 |
| oriboca virus | 3 | species | viruses | viruses | 192199 |
| arthroderma racemosum | 3 | species | plants | fungi | 231010 |
| phoma eupyrena | 3 | species | plants | fungi | 297020 |
| diplogonoporus balaenopterae | 3 | species | invertebrates | helminths | 463145 |
| trichobilharzia stagnicolae | 3 | species | invertebrates | helminths | 596254 |
| haplorchis yokogawai | 3 | species | invertebrates | helminths | 667377 |
| quaranfil virus | 3 | species | viruses | viruses | 688436 |
| zinga virus | 3 | species | | viruses | |
| amphimerus pseudofelineus | 3 | species | | helminths | |
| opisthorchis noverca | 3 | species | | helminths | 1269762 |
| monongahela virus | 3 | no rank | | viruses | 2259728 |
| heterophyopsis continua | 3 | species | | helminths | 1193295 |
| scopulariopsis candida | 3 | species | | fungi | 186344 |
| centrocestus armatus | 3 | species | | helminths | |
| fasciola indica | 3 | species | | helminths | |
| metorchis conjunctus | 3 | species | | helminths | |
| echinochasmus perfoliatus | 3 | species | | helminths | |
| echinostoma cinetorchis | 3 | species | | helminths | 1873862 |
| sebaldella termitidis | 2 | species | bacteria | bacteria | 826 |
| [eubacterium] combesii | 2 | species | bacteria | bacteria | 39481 |
| [eubacterium] contortum | 2 | species | bacteria | bacteria | 39482 |
| tyuleniy virus | 2 | species | viruses | viruses | 40004 |
| legionella tucsonensis | 2 | species | bacteria | bacteria | 40335 |
| mycobacterium conspicuum | 2 | species | bacteria | bacteria | 44010 |
| sepik virus | 2 | species | viruses | viruses | 44026 |
| setosphaeria rostrata | 2 | species | plants | fungi | 45150 |
| batken virus | 2 | no rank | viruses | viruses | 53017 |
| drechslera biseptata | 2 | species | plants | fungi | 56819 |
| apoi virus | 2 | species | viruses | viruses | 64280 |
| rio bravo virus | 2 | species | viruses | viruses | 64285 |
| bagaza virus | 2 | species | viruses | viruses | 64290 |
| bussuquara virus | 2 | no rank | viruses | viruses | 64304 |
| kedougou virus | 2 | species | viruses | viruses | 64311 |
| prevotella enoeca | 2 | species | bacteria | bacteria | 76123 |
| cephaliophora irregularis | 2 | species | plants | fungi | 77528 |
| oidiodendron cerealis | 2 | species | plants | fungi | 78142 |
| cladophialophora boppii | 2 | species | plants | fungi | 82106 |
| cladophialophora arxii | 2 | species | plants | fungi | 82108 |
| tatumella ptyseos | 2 | species | bacteria | bacteria | 82987 |
| eubacterium multiforme | 2 | species | bacteria | bacteria | 83339 |
| curvularia verruculosa | 2 | species | plants | fungi | 95740 |
| human mastadenovirus e | 2 | species | viruses | viruses | 130308 |
| cedecea neteri | 2 | species | bacteria | bacteria | 158822 |
| cedecea lapagei | 2 | species | bacteria | bacteria | 158823 |
| neotestudina rosatii | 2 | species | plants | fungi | 160030 |
| phaeotrichoconis crotalariae | 2 | species | plants | fungi | 179659 |
| ochroconis tshawytschae | 2 | species | plants | fungi | 262132 |
| cyclodontostomum purvisi | 2 | species | invertebrates | helminths | 321341 |
| microsporum praecox | 2 | species | plants | fungi | 328624 |
| paragonimus bangkokensis | 2 | species | invertebrates | helminths | 362703 |
| falciformispora tompkinsii | 2 | species | plants | fungi | 1489896 |
| juquitiba virus | 2 | species | viruses | viruses | 430511 |
| diphyllobothrium klebanovskii | 2 | species | invertebrates | helminths | 492325 |
| pyrenochaeta unguis-hominis | 2 | species | plants | fungi | 555973 |
| tacaiuma virus | 2 | species | viruses | viruses | 611707 |
| acremonium curvulum | 2 | species | plants | fungi | 687987 |
| mycoleptodiscus indicus | 2 | species | plants | fungi | 745397 |
| trichostrongylus calcaratus | 2 | species | | helminths | |
| brugia guyanensis | 2 | species | | helminths | |
| microfilaria bolivarensis | 2 | species | | helminths | |
| gan gan virus | 2 | species | | viruses | 1764076 |
| echinostoma echinatum | 2 | species | | helminths | |
| dichotomophthora portulacae | 2 | species | | fungi | 1508212 |
| trichostrongylus affinis | 2 | species | | helminths | |
| raillietina celebensis | 2 | species | | helminths | |
| artyfechinostomum mehrai | 2 | species | | helminths | |
| brugia beaveri | 2 | species | | helminths | |
| paragonimus caliensis | 2 | species | | helminths | 1902345 |
| phoma hibernica | 2 | species | | fungi | |
| issyk-kul virus | 2 | species | | viruses | 1453408 |
| alaria americana | 2 | species | | helminths | |
| trubanaman virus | 2 | species | | viruses | 1678230 |
| nematodirus abnormalis | 2 | species | | helminths | |
| drepanidotaenia lanceolata | 2 | species | | helminths | 1732538 |
| mesocestoides variabilis | 2 | species | | helminths | |