| trichostrongylus calcaratus | 2 | species | | helminths | |
| brugia guyanensis | 2 | species | | helminths | |
| microfilaria bolivarensis | 2 | species | | helminths | |
| gan gan virus | 2 | species | | viruses | 1764076 |
| echinostoma echinatum | 2 | species | | helminths | |
| dichotomophthora portulacae | 2 | species | | fungi | 1508212 |
| trichostrongylus affinis | 2 | species | | helminths | |
| raillietina celebensis | 2 | species | | helminths | |
| artyfechinostomum mehrai | 2 | species | | helminths | |
| brugia beaveri | 2 | species | | helminths | |
| paragonimus caliensis | 2 | species | | helminths | 1902345 |
| phoma hibernica | 2 | species | | fungi | |
| issyk-kul virus | 2 | species | | viruses | 1453408 |
| alaria americana | 2 | species | | helminths | |
| trubanaman virus | 2 | species | | viruses | 1678230 |
| nematodirus abnormalis | 2 | species | | helminths | |
| drepanidotaenia lanceolata | 2 | species | | helminths | 1732538 |
| mesocestoides variabilis | 2 | species | | helminths | |
| mammomonogamus laryngeus | 2 | species | | helminths | |
| echinostoma macrorchis | 2 | species | | helminths | |
| moraxella liquefaciens | 2 | species | | bacteria | |
| dirofilaria subdermata | 2 | species | | helminths | |
| legionella hackeliae | 3 | species | bacteria | bacteria | 449 |
| legionella rubrilucens | 3 | species | bacteria | bacteria | 458 |
| microascus cirrosus | 3 | species | plants | fungi | 5595 |
| leishmania naiffi | 3 | species | invertebrates | protozoa | 5678 |
| leptospira weilii | 3 | species | bacteria | bacteria | 28184 |
| mycobacterium shimoidei | 3 | species | bacteria | bacteria | 29313 |
| yersinia rohdei | 3 | species | bacteria | bacteria | 29485 |
| bwamba virus | 3 | species | viruses | viruses | 35310 |
| fusarium ventricosum | 3 | species | plants | fungi | 42327 |
| corynebacterium argentoratense | 3 | species | bacteria | bacteria | 42817 |
| koutango virus | 3 | species | viruses | viruses | 44025 |
| trichostrongylus probolurus | 3 | species | invertebrates | helminths | 53330 |
| edge hill virus | 3 | species | viruses | viruses | 64296 |
| moniliella suaveolens | 3 | species | plants | fungi | 64615 |
| oligella ureolytica | 3 | species | bacteria | bacteria | 90244 |
| curvularia clavata | 3 | species | plants | fungi | 95742 |
| heterophyes nocens | 3 | species | invertebrates | helminths | 104455 |
| human mastadenovirus b | 3 | species | viruses | viruses | 108098 |
| trichostrongylus capricola | 3 | species | invertebrates | helminths | 126400 |
| exserohilum longirostratum | 3 | species | plants | fungi | 132106 |
| selenomonas dianae | 3 | species | bacteria | bacteria | 135079 |
| myriodontium keratinophilum | 3 | species | plants | fungi | 150376 |
| cedecea davisae | 3 | species | bacteria | bacteria | 158484 |
| doratomyces stemonitis | 3 | species | plants | fungi | 186354 |
| caraparu virus | 3 | species | viruses | viruses | 192196 |
| oriboca virus | 3 | species | viruses | viruses | 192199 |
| arthroderma racemosum | 3 | species | plants | fungi | 231010 |
| phoma eupyrena | 3 | species | plants | fungi | 297020 |
| diplogonoporus balaenopterae | 3 | species | invertebrates | helminths | 463145 |
| trichobilharzia stagnicolae | 3 | species | invertebrates | helminths | 596254 |
| haplorchis yokogawai | 3 | species | invertebrates | helminths | 667377 |
| quaranfil virus | 3 | species | viruses | viruses | 688436 |
| zinga virus | 3 | species | | viruses | |
| amphimerus pseudofelineus | 3 | species | | helminths | |
| opisthorchis noverca | 3 | species | | helminths | 1269762 |
| monongahela virus | 3 | no rank | | viruses | 2259728 |
| heterophyopsis continua | 3 | species | | helminths | 1193295 |
| scopulariopsis candida | 3 | species | | fungi | 186344 |
| centrocestus armatus | 3 | species | | helminths | |
| fasciola indica | 3 | species | | helminths | |
| metorchis conjunctus | 3 | species | | helminths | |
| echinochasmus perfoliatus | 3 | species | | helminths | |
| echinostoma cinetorchis | 3 | species | | helminths | 1873862 |
| actinobacillus hominis | 4 | species | bacteria | bacteria | 719 |
| legionella cincinnatiensis | 4 | species | bacteria | bacteria | 28085 |
| legionella sainthelensi | 4 | species | bacteria | bacteria | 28087 |
| bacteroides eggerthii | 4 | species | bacteria | bacteria | 28111 |
| odoribacter splanchnicus | 4 | species | bacteria | bacteria | 28118 |
| prevotella buccalis | 4 | species | bacteria | bacteria | 28127 |
| prevotella oulorum | 4 | species | bacteria | bacteria | 28136 |
| capnocytophaga cynodegmi | 4 | species | bacteria | bacteria | 28189 |
| legionella oakridgensis | 4 | species | bacteria | bacteria | 29423 |
| tubercularia vulgaris | 4 | species | plants | fungi | 29877 |
| anaerococcus vaginalis | 4 | species | bacteria | bacteria | 33037 |
| yersinia mollaretii | 4 | species | bacteria | bacteria | 33060 |
| moraxella cuniculi | 4 | species | bacteria | bacteria | 34061 |
| curvularia brachyspora | 4 | species | plants | fungi | 39400 |
| faecalitalea cylindroides | 4 | species | bacteria | bacteria | 39483 |
| borrelia hispanica | 4 | species | bacteria | bacteria | 40835 |
| exophiala salmonis | 4 | species | plants | fungi | 43214 |
| kokobera virus | 4 | species | viruses | viruses | 44024 |
| schistosoma malayensis | 4 | species | invertebrates | helminths | 53353 |
| tsukamurella tyrosinosolvens | 4 | species | bacteria | bacteria | 57704 |
| paragonimus skrjabini | 4 | species | invertebrates | helminths | 59630 |
| arthroderma fulvum | 4 | species | plants | fungi | 63401 |
| phaeoannellomyces elegans | 4 | species | plants | fungi | 66226 |
| citrobacter farmeri | 4 | species | bacteria | bacteria | 67824 |
| citrobacter werkmanii | 4 | species | bacteria | bacteria | 67827 |
| microsporum gallinae | 4 | species | plants | fungi | 69892 |
| malassezia obtusa | 4 | species | plants | fungi | 76774 |
| malassezia slooffiae | 4 | species | plants | fungi | 76776 |
| kairi virus | 4 | species | viruses | viruses | 80939 |
| trichosporon ovoides | 4 | species | plants | fungi | 82524 |
| plagiorchis muris | 4 | species | invertebrates | helminths | 84105 |
| coniochaeta hoffmannii | 4 | species | plants | fungi | 91930 |
| pleurostoma repens | 4 | species | plants | fungi | 91939 |
| stenella araguata | 4 | species | plants | fungi | 93486 |
| pygidiopsis summa | 4 | species | invertebrates | helminths | 104472 |