| brevundimonas vesicularis | 15 | species | bacteria | bacteria | 41276 |
| ewingella americana | 10 | species | bacteria | bacteria | 41202 |
| aspergillus candidus | 20 | species | plants | fungi | 41067 |
| borrelia hispanica | 4 | species | bacteria | bacteria | 40835 |
| borrelia duttonii | 13 | species | bacteria | bacteria | 40834 |
| sutterella wadsworthensis | 7 | species | bacteria | bacteria | 40545 |
| leptotrichia buccalis | 17 | species | bacteria | bacteria | 40542 |
| scopulariopsis brumptii | 5 | species | plants | fungi | 40376 |
| fonsecaea pedrosoi | 28 | species | plants | fungi | 40355 |
| trichostrongylus vitrinus | 19 | species | invertebrates | helminths | 40352 |
| trichostrongylus axei | 22 | species | invertebrates | helminths | 40349 |
| legionella tucsonensis | 2 | species | bacteria | bacteria | 40335 |
| stenotrophomonas maltophilia | 80 | species | bacteria | bacteria | 40324 |
| acinetobacter radioresistens | 23 | species | bacteria | bacteria | 40216 |
| acinetobacter junii | 20 | species | bacteria | bacteria | 40215 |
| acinetobacter johnsonii | 26 | species | bacteria | bacteria | 40214 |
| neurospora sitophila | 11 | species | plants | fungi | 40126 |
| wad medani virus | -3 | species | | viruses | 40067 |
| kemerovo virus | 8 | no rank | viruses | viruses | 40064 |
| orungo virus | 4 | species | | viruses | 40058 |
| lebombo virus | -3 | species | | viruses | 40057 |
| changuinola virus | -3 | species | | viruses | 40052 |
| saumarez reef virus | 1 | species | viruses | viruses | 40012 |
| tyuleniy virus | 2 | species | viruses | viruses | 40004 |
| klebsiella granulomatis | 16 | species | bacteria | bacteria | 39824 |
| veillonella dispar | 17 | species | bacteria | bacteria | 39778 |
| veillonella atypica | 12 | species | bacteria | bacteria | 39777 |
| mycobacterium porcinum | 7 | species | bacteria | bacteria | 39693 |
| [eubacterium] rectale | 27 | species | bacteria | bacteria | 39491 |
| clostridium moniliforme | 1 | species | bacteria | bacteria | 39489 |
| faecalitalea cylindroides | 4 | species | bacteria | bacteria | 39483 |
| [eubacterium] contortum | 2 | species | bacteria | bacteria | 39482 |
| [eubacterium] combesii | 2 | species | bacteria | bacteria | 39481 |
| phialophora verrucosa | 16 | species | plants | fungi | 39412 |
| curvularia brachyspora | 4 | species | plants | fungi | 39400 |
| heterobilharzia americana | 11 | species | invertebrates | helminths | 39320 |
| human parechovirus 2 | 16 | no rank | viruses | viruses | 39085 |
| banzi virus | 9 | species | viruses | viruses | 38837 |
| yaba monkey tumor virus | 9 | species | viruses | viruses | 38804 |
| duvenhage virus | 10 | species | viruses | viruses | 38767 |
| schistosoma mekongi | 12 | species | invertebrates | helminths | 38744 |
| schistosomatium douthitti | 18 | species | invertebrates | helminths | 38741 |
| bartonella henselae | 77 | species | bacteria | bacteria | 38323 |
| rhodococcus rhodnii | 9 | species | bacteria | bacteria | 38312 |
| corynebacterium minutissimum | 16 | species | bacteria | bacteria | 38301 |
| photobacterium damselae | 24 | species | bacteria | bacteria | 38293 |
| corynebacterium macginleyi | 7 | species | bacteria | bacteria | 38290 |
| corynebacterium jeikeium | 22 | species | bacteria | bacteria | 38289 |
| corynebacterium afermentans | 10 | species | bacteria | bacteria | 38286 |
| chaetomium globosum | 30 | species | plants | fungi | 38033 |
| parengyodontium album | 29 | species | plants | fungi | 37998 |
| rhinocladiella aquaspersa | 6 | species | plants | fungi | 37936 |
| rickettsia honei | 12 | species | bacteria | bacteria | 37816 |
| enterococcus casseliflavus | 32 | species | bacteria | bacteria | 37734 |
| talaromyces marneffei | 43 | species | plants | fungi | 37727 |
| corynebacterium pseudodiphtheriticum | 13 | species | bacteria | bacteria | 37637 |
| nocardia transvalensis | 10 | species | bacteria | bacteria | 37333 |
| nocardia nova | 13 | species | bacteria | bacteria | 37330 |
| nocardia farcinica | 23 | species | bacteria | bacteria | 37329 |
| nocardia brasiliensis | 26 | species | bacteria | bacteria | 37326 |
| human herpesvirus 8 | 140 | species | viruses | viruses | 37296 |
| chikungunya virus | 39 | species | viruses | viruses | 37124 |
| clavispora lusitaniae | 40 | species | plants | fungi | 36911 |
| gordonia sputi | 7 | species | bacteria | bacteria | 36823 |
| gordonia rubripertincta | 32 | species | bacteria | bacteria | 36822 |
| gordonia amarae | 22 | species | bacteria | bacteria | 36821 |
| mycobacterium genavense | 21 | species | bacteria | bacteria | 36812 |
| mycobacterium abscessus | 38 | species | bacteria | bacteria | 36809 |
| corynebacterium bovis | 27 | species | bacteria | bacteria | 36808 |
| isoparorchis hypselobagri | 5 | species | invertebrates | helminths | 36663 |
| penicillium commune | 18 | species | plants | fungi | 36653 |
| rotavirus c | 33 | species | viruses | viruses | 36427 |
| venezuelan equine encephalitis virus (strain everglades fe3-7c) | -3 | no rank | viruses | viruses | 36383 |
| plasmodium ovale | 24 | species | invertebrates | protozoa | 36330 |
| trichuris trichiura | 51 | species | invertebrates | helminths | 36087 |
| mucor circinelloides | 27 | species | plants | fungi | 36080 |
| bilophila wadsworthia | 21 | species | bacteria | bacteria | 35833 |
| helicobacter pullorum | 19 | species | bacteria | bacteria | 35818 |
| helicobacter heilmannii | 37 | species | bacteria | bacteria | 35817 |
| rickettsia sibirica | 14 | species | bacteria | bacteria | 35793 |
| rickettsia massiliae | 16 | species | bacteria | bacteria | 35791 |
| rickettsia japonica | 14 | species | bacteria | bacteria | 35790 |
| rickettsia africae | 20 | species | bacteria | bacteria | 35788 |
| corynebacterium kutscheri | 11 | species | bacteria | bacteria | 35755 |
| thielavia terrestris | 10 | species | plants | fungi | 35720 |
| citrobacter amalonaticus | 12 | species | bacteria | bacteria | 35703 |
| pelodera strongyloides | 9 | species | invertebrates | helminths | 35557 |
| mogibacterium timidum | 11 | species | bacteria | bacteria | 35519 |
| [eubacterium] nodatum | 17 | species | bacteria | bacteria | 35518 |
| [eubacterium] brachy | 9 | species | bacteria | bacteria | 35517 |
| nyando virus | 1 | no rank | viruses | viruses | 35316 |
| bwamba virus | 3 | species | viruses | viruses | 35310 |
| california encephalitis virus | 28 | no rank | viruses | viruses | 35305 |
| bunyamwera virus | 31 | species | viruses | viruses | 35304 |
| paragonimus westermani | 20 | species | invertebrates | helminths | 34504 |
| conidiobolus coronatus | 19 | species | plants | fungi | 34488 |
| basidiobolus ranarum | 18 | species | plants | fungi | 34480 |
| colletotrichum dematium | 13 | species | plants | fungi | 34405 |
| microsporum audouinii | 18 | species | plants | fungi | 34393 |
| epidermophyton floccosum | 29 | species | plants | fungi | 34391 |