| bebaru virus | 1 | species | viruses | viruses | 59305 |
| mayaro virus | 11 | species | viruses | viruses | 59301 |
| getah virus | 11 | species | viruses | viruses | 59300 |
| toxascaris leonina | 22 | species | invertebrates | helminths | 59264 |
| encephalitozoon intestinalis | 43 | species | plants | fungi | 58839 |
| rhizopus microsporus | 25 | species | plants | fungi | 58291 |
| citrobacter braakii | 10 | species | bacteria | bacteria | 57706 |
| tsukamurella tyrosinosolvens | 4 | species | bacteria | bacteria | 57704 |
| european bat lyssavirus 2 | 14 | species | viruses | viruses | 57483 |
| european bat lyssavirus 1 | 19 | species | viruses | viruses | 57482 |
| fusarium dimerum | 9 | species | plants | fungi | 57145 |
| dicrocoelium dendriticum | 19 | species | invertebrates | helminths | 57078 |
| drechslera biseptata | 2 | species | plants | fungi | 56819 |
| mycobacterium mucogenicum | 11 | species | bacteria | bacteria | 56689 |
| malassezia furfur | 48 | species | plants | fungi | 55194 |
| phyllosticta citricarpa | 10 | species | plants | fungi | 55181 |
| salmonella bongori | 18 | species | bacteria | bacteria | 54736 |
| raoultella ornithinolytica | 8 | species | bacteria | bacteria | 54291 |
| gb virus c | 69 | species | viruses | viruses | 54290 |
| pichia fermentans | 12 | species | plants | fungi | 53655 |
| schistosoma malayensis | 4 | species | invertebrates | helminths | 53353 |
| enterococcus mundtii | 18 | species | bacteria | bacteria | 53346 |
| enterococcus durans | 29 | species | bacteria | bacteria | 53345 |
| trichostrongylus probolurus | 3 | species | invertebrates | helminths | 53330 |
| ancylostoma ceylanicum | 20 | species | invertebrates | helminths | 53326 |
| batken virus | 2 | no rank | viruses | viruses | 53017 |
| actinomyces meyeri | 12 | species | bacteria | bacteria | 52773 |
| actinomyces gerencseriae | 12 | species | bacteria | bacteria | 52769 |
| actinomyces georgiae | 5 | species | bacteria | bacteria | 52768 |
| prevotella dentalis | 7 | species | bacteria | bacteria | 52227 |
| kluyvera ascorbata | 18 | species | bacteria | bacteria | 51288 |
| [eubacterium] saphenum | 8 | species | bacteria | bacteria | 51123 |
| necator americanus | 46 | species | invertebrates | helminths | 51031 |
| enterobius vermicularis | 24 | species | invertebrates | helminths | 51028 |
| ancylostoma duodenale | 25 | species | invertebrates | helminths | 51022 |
| echinostoma revolutum | 23 | species | invertebrates | helminths | 48217 |
| echinostoma hortense | 5 | species | invertebrates | helminths | 48216 |
| bacteroides caccae | 9 | species | bacteria | bacteria | 47678 |
| tsukamurella pulmonis | 5 | species | bacteria | bacteria | 47312 |
| clostridium chauvoei | 15 | species | bacteria | bacteria | 46867 |
| colorado tick fever virus | 17 | species | viruses | viruses | 46839 |
| fasciola gigantica | 23 | species | invertebrates | helminths | 46835 |
| bacteroides stercoris | 7 | species | bacteria | bacteria | 46506 |
| parabacteroides merdae | 7 | species | bacteria | bacteria | 46503 |
| aspergillus versicolor | 33 | species | plants | fungi | 46472 |
| abiotrophia defectiva | 17 | species | bacteria | bacteria | 46125 |
| granulicatella adiacens | 17 | species | bacteria | bacteria | 46124 |
| nocardia pseudobrasiliensis | 8 | species | bacteria | bacteria | 45979 |
| trichinella britovi | 23 | species | invertebrates | helminths | 45882 |
| sabia mammarenavirus | 9 | species | viruses | viruses | 45709 |
| candida catenulata | 13 | species | plants | fungi | 45537 |
| teladorsagia circumcincta | 53 | species | invertebrates | helminths | 45464 |
| [candida] haemulonis | 9 | species | plants | fungi | 45357 |
| [candida] intermedia | 14 | species | plants | fungi | 45354 |
| alternaria infectoria | 12 | species | plants | fungi | 45303 |
| sarocladium kiliense | 11 | species | plants | fungi | 45277 |
| guanarito mammarenavirus | 15 | species | viruses | viruses | 45219 |
| setosphaeria rostrata | 2 | species | plants | fungi | 45150 |
| legionella lansingensis | 1 | species | bacteria | bacteria | 45067 |
| new york virus | 7 | species | viruses | viruses | 44755 |
| borrelia recurrentis | 21 | species | bacteria | bacteria | 44449 |
| borrelia persica | 5 | species | bacteria | bacteria | 44448 |
| strongyloides fuelleborni | 12 | species | invertebrates | helminths | 44441 |
| leishmania chagasi | 46 | species | invertebrates | protozoa | 44271 |
| paenibacillus macerans | 27 | species | bacteria | bacteria | 44252 |
| paenibacillus alvei | 19 | species | bacteria | bacteria | 44250 |
| sepik virus | 2 | species | viruses | viruses | 44026 |
| koutango virus | 3 | species | viruses | viruses | 44025 |
| kokobera virus | 4 | species | viruses | viruses | 44024 |
| mycobacterium conspicuum | 2 | species | bacteria | bacteria | 44010 |
| corynebacterium urealyticum | 15 | species | bacteria | bacteria | 43771 |
| corynebacterium striatum | 19 | species | bacteria | bacteria | 43770 |
| corynebacterium propinquum | 5 | species | bacteria | bacteria | 43769 |
| rhodococcus equi | 50 | species | bacteria | bacteria | 43767 |
| dientamoeba fragilis | 23 | species | invertebrates | protozoa | 43352 |
| mycobacterium peregrinum | 16 | species | bacteria | bacteria | 43304 |
| isaria javanica | 5 | species | plants | fungi | 43265 |
| pseudomonas alcaligenes | 25 | species | bacteria | bacteria | 43263 |
| exophiala salmonis | 4 | species | plants | fungi | 43214 |
| acanthamoeba culbertsoni | 15 | species | invertebrates | protozoa | 43142 |
| trichomonas tenax | 11 | species | invertebrates | protozoa | 43075 |
| rickettsia felis | 29 | species | bacteria | bacteria | 42862 |
| corynebacterium argentoratense | 3 | species | bacteria | bacteria | 42817 |
| enterovirus d68 | 8 | no rank | viruses | viruses | 42789 |
| tsukamurella inchonensis | 6 | species | bacteria | bacteria | 42777 |
| fusarium lichenicola | 12 | species | plants | fungi | 42744 |
| fusarium subglutinans | 30 | species | plants | fungi | 42677 |
| fusarium sacchari | 7 | species | plants | fungi | 42676 |
| fusarium napiforme | 5 | species | plants | fungi | 42672 |
| lichtheimia corymbifera | 24 | species | plants | fungi | 42458 |
| vittaforma corneae | 18 | species | plants | fungi | 42399 |
| fusarium ventricosum | 3 | species | plants | fungi | 42327 |
| mansonella perstans | 18 | species | invertebrates | helminths | 42231 |
| brugia timori | 10 | species | invertebrates | helminths | 42155 |
| pleurostoma richardsiae | 9 | species | plants | fungi | 41990 |
| porphyromonas catoniae | 6 | species | bacteria | bacteria | 41976 |
| aspergillus flavipes | 13 | species | plants | fungi | 41900 |
| opisthorchis sinensis | 1 | species | invertebrates | helminths | 41765 |
| lomentospora prolificans | 44 | species | plants | fungi | 41688 |
| entamoeba moshkovskii | 15 | species | invertebrates | protozoa | 41668 |