| gordonia rubripertincta | 32 | species | bacteria | bacteria | 36822 |
| gordonia sputi | 7 | species | bacteria | bacteria | 36823 |
| clavispora lusitaniae | 40 | species | plants | fungi | 36911 |
| chikungunya virus | 39 | species | viruses | viruses | 37124 |
| human herpesvirus 8 | 140 | species | viruses | viruses | 37296 |
| nocardia brasiliensis | 26 | species | bacteria | bacteria | 37326 |
| nocardia farcinica | 23 | species | bacteria | bacteria | 37329 |
| nocardia nova | 13 | species | bacteria | bacteria | 37330 |
| nocardia transvalensis | 10 | species | bacteria | bacteria | 37333 |
| corynebacterium pseudodiphtheriticum | 13 | species | bacteria | bacteria | 37637 |
| talaromyces marneffei | 43 | species | plants | fungi | 37727 |
| enterococcus casseliflavus | 32 | species | bacteria | bacteria | 37734 |
| rickettsia honei | 12 | species | bacteria | bacteria | 37816 |
| rhinocladiella aquaspersa | 6 | species | plants | fungi | 37936 |
| parengyodontium album | 29 | species | plants | fungi | 37998 |
| chaetomium globosum | 30 | species | plants | fungi | 38033 |
| corynebacterium afermentans | 10 | species | bacteria | bacteria | 38286 |
| corynebacterium jeikeium | 22 | species | bacteria | bacteria | 38289 |
| corynebacterium macginleyi | 7 | species | bacteria | bacteria | 38290 |
| photobacterium damselae | 24 | species | bacteria | bacteria | 38293 |
| corynebacterium minutissimum | 16 | species | bacteria | bacteria | 38301 |
| rhodococcus rhodnii | 9 | species | bacteria | bacteria | 38312 |
| bartonella henselae | 77 | species | bacteria | bacteria | 38323 |
| schistosomatium douthitti | 18 | species | invertebrates | helminths | 38741 |
| schistosoma mekongi | 12 | species | invertebrates | helminths | 38744 |
| duvenhage virus | 10 | species | viruses | viruses | 38767 |
| yaba monkey tumor virus | 9 | species | viruses | viruses | 38804 |
| banzi virus | 9 | species | viruses | viruses | 38837 |
| human parechovirus 2 | 16 | no rank | viruses | viruses | 39085 |
| heterobilharzia americana | 11 | species | invertebrates | helminths | 39320 |
| curvularia brachyspora | 4 | species | plants | fungi | 39400 |
| phialophora verrucosa | 16 | species | plants | fungi | 39412 |
| [eubacterium] combesii | 2 | species | bacteria | bacteria | 39481 |
| [eubacterium] contortum | 2 | species | bacteria | bacteria | 39482 |
| faecalitalea cylindroides | 4 | species | bacteria | bacteria | 39483 |
| clostridium moniliforme | 1 | species | bacteria | bacteria | 39489 |
| [eubacterium] rectale | 27 | species | bacteria | bacteria | 39491 |
| mycobacterium porcinum | 7 | species | bacteria | bacteria | 39693 |
| veillonella atypica | 12 | species | bacteria | bacteria | 39777 |
| veillonella dispar | 17 | species | bacteria | bacteria | 39778 |
| klebsiella granulomatis | 16 | species | bacteria | bacteria | 39824 |
| tyuleniy virus | 2 | species | viruses | viruses | 40004 |
| saumarez reef virus | 1 | species | viruses | viruses | 40012 |
| changuinola virus | -3 | species | | viruses | 40052 |
| lebombo virus | -3 | species | | viruses | 40057 |
| orungo virus | 4 | species | | viruses | 40058 |
| kemerovo virus | 8 | no rank | viruses | viruses | 40064 |
| wad medani virus | -3 | species | | viruses | 40067 |
| neurospora sitophila | 11 | species | plants | fungi | 40126 |
| acinetobacter johnsonii | 26 | species | bacteria | bacteria | 40214 |
| acinetobacter junii | 20 | species | bacteria | bacteria | 40215 |
| acinetobacter radioresistens | 23 | species | bacteria | bacteria | 40216 |
| stenotrophomonas maltophilia | 80 | species | bacteria | bacteria | 40324 |
| legionella tucsonensis | 2 | species | bacteria | bacteria | 40335 |
| trichostrongylus axei | 22 | species | invertebrates | helminths | 40349 |
| trichostrongylus vitrinus | 19 | species | invertebrates | helminths | 40352 |
| fonsecaea pedrosoi | 28 | species | plants | fungi | 40355 |
| scopulariopsis brumptii | 5 | species | plants | fungi | 40376 |
| leptotrichia buccalis | 17 | species | bacteria | bacteria | 40542 |
| sutterella wadsworthensis | 7 | species | bacteria | bacteria | 40545 |
| borrelia duttonii | 13 | species | bacteria | bacteria | 40834 |
| borrelia hispanica | 4 | species | bacteria | bacteria | 40835 |
| aspergillus candidus | 20 | species | plants | fungi | 41067 |
| ewingella americana | 10 | species | bacteria | bacteria | 41202 |
| brevundimonas vesicularis | 15 | species | bacteria | bacteria | 41276 |
| entamoeba moshkovskii | 15 | species | invertebrates | protozoa | 41668 |
| lomentospora prolificans | 44 | species | plants | fungi | 41688 |
| opisthorchis sinensis | 1 | species | invertebrates | helminths | 41765 |
| aspergillus flavipes | 13 | species | plants | fungi | 41900 |
| porphyromonas catoniae | 6 | species | bacteria | bacteria | 41976 |
| pleurostoma richardsiae | 9 | species | plants | fungi | 41990 |
| brugia timori | 10 | species | invertebrates | helminths | 42155 |
| mansonella perstans | 18 | species | invertebrates | helminths | 42231 |
| fusarium ventricosum | 3 | species | plants | fungi | 42327 |
| vittaforma corneae | 18 | species | plants | fungi | 42399 |
| lichtheimia corymbifera | 24 | species | plants | fungi | 42458 |
| fusarium napiforme | 5 | species | plants | fungi | 42672 |
| fusarium sacchari | 7 | species | plants | fungi | 42676 |
| fusarium subglutinans | 30 | species | plants | fungi | 42677 |
| fusarium lichenicola | 12 | species | plants | fungi | 42744 |
| tsukamurella inchonensis | 6 | species | bacteria | bacteria | 42777 |
| enterovirus d68 | 8 | no rank | viruses | viruses | 42789 |
| corynebacterium argentoratense | 3 | species | bacteria | bacteria | 42817 |
| rickettsia felis | 29 | species | bacteria | bacteria | 42862 |
| trichomonas tenax | 11 | species | invertebrates | protozoa | 43075 |
| acanthamoeba culbertsoni | 15 | species | invertebrates | protozoa | 43142 |
| exophiala salmonis | 4 | species | plants | fungi | 43214 |
| pseudomonas alcaligenes | 25 | species | bacteria | bacteria | 43263 |
| isaria javanica | 5 | species | plants | fungi | 43265 |
| mycobacterium peregrinum | 16 | species | bacteria | bacteria | 43304 |
| dientamoeba fragilis | 23 | species | invertebrates | protozoa | 43352 |
| rhodococcus equi | 50 | species | bacteria | bacteria | 43767 |
| corynebacterium propinquum | 5 | species | bacteria | bacteria | 43769 |
| corynebacterium striatum | 19 | species | bacteria | bacteria | 43770 |
| corynebacterium urealyticum | 15 | species | bacteria | bacteria | 43771 |
| mycobacterium conspicuum | 2 | species | bacteria | bacteria | 44010 |
| kokobera virus | 4 | species | viruses | viruses | 44024 |
| koutango virus | 3 | species | viruses | viruses | 44025 |
| sepik virus | 2 | species | viruses | viruses | 44026 |
| paenibacillus alvei | 19 | species | bacteria | bacteria | 44250 |