| diphyllobothrium dendriticum | 24 | species | invertebrates | helminths | 28845 |
| rotavirus a | 58 | species | viruses | viruses | 28875 |
| rotavirus b | 22 | species | viruses | viruses | 28876 |
| salmonella enterica | 107 | species | bacteria | bacteria | 28901 |
| ancylostoma caninum | 48 | species | invertebrates | helminths | 29170 |
| mycobacterium haemophilum | 26 | species | bacteria | bacteria | 29311 |
| mycobacterium shimoidei | 3 | species | bacteria | bacteria | 29313 |
| staphylococcus saprophyticus | 42 | species | bacteria | bacteria | 29385 |
| gemella morbillorum | 18 | species | bacteria | bacteria | 29391 |
| legionella oakridgensis | 4 | species | bacteria | bacteria | 29423 |
| acinetobacter haemolyticus | 15 | species | bacteria | bacteria | 29430 |
| psychrobacter phenylpyruvicus | 11 | species | bacteria | bacteria | 29432 |
| moraxella ovis | 11 | species | bacteria | bacteria | 29433 |
| brucella melitensis | 52 | species | bacteria | bacteria | 29459 |
| veillonella parvula | 36 | species | bacteria | bacteria | 29466 |
| yersinia frederiksenii | 11 | species | bacteria | bacteria | 29484 |
| yersinia rohdei | 3 | species | bacteria | bacteria | 29485 |
| yersinia ruckeri | 36 | species | bacteria | bacteria | 29486 |
| vibrio furnissii | 25 | species | bacteria | bacteria | 29494 |
| leptospira inadai | 6 | species | bacteria | bacteria | 29506 |
| leptospira kirschneri | 13 | species | bacteria | bacteria | 29507 |
| leptospira meyeri | 11 | species | bacteria | bacteria | 29508 |
| borrelia crocidurae | 13 | species | bacteria | bacteria | 29520 |
| porphyromonas circumdentaria | 7 | species | bacteria | bacteria | 29524 |
| tubercularia vulgaris | 4 | species | plants | fungi | 29877 |
| cystobasidium minutum | 16 | species | plants | fungi | 29899 |
| sporothrix schenckii | 40 | species | plants | fungi | 29908 |
| cladosporium cladosporioides | 29 | species | plants | fungi | 29917 |
| cladosporium oxysporum | 8 | species | plants | fungi | 29919 |
| dirofilaria repens | 18 | species | invertebrates | helminths | 31241 |
| schistosoma mattheei | 17 | species | invertebrates | helminths | 31246 |
| enterocytozoon bieneusi | 54 | species | plants | fungi | 31281 |
| human coronavirus oc43 | 29 | no rank | viruses | viruses | 31631 |
| ockelbo virus | 14 | no rank | viruses | viruses | 31699 |
| amycolatopsis orientalis | 31 | species | bacteria | bacteria | 31958 |
| alcaligenes faecalis subsp. faecalis | 8 | subspecies | bacteria | bacteria | 32001 |
| babesia divergens | 31 | species | invertebrates | protozoa | 32595 |
| acanthamoeba rhysodes | 5 | species | invertebrates | protozoa | 32599 |
| buffalopox virus | 7 | no rank | viruses | viruses | 32605 |
| actinomyces neuii | 8 | species | bacteria | bacteria | 33007 |
| propionibacterium avidum | 11 | species | bacteria | bacteria | 33010 |
| propionibacterium granulosum | 18 | species | bacteria | bacteria | 33011 |
| anaerococcus lactolyticus | 5 | species | bacteria | bacteria | 33032 |
| parvimonas micra | 42 | species | bacteria | bacteria | 33033 |
| anaerococcus prevotii | 17 | species | bacteria | bacteria | 33034 |
| blautia producta | 23 | species | bacteria | bacteria | 33035 |
| anaerococcus vaginalis | 4 | species | bacteria | bacteria | 33037 |
| streptococcus milleri | 39 | species | bacteria | bacteria | 33040 |
| neisseria perflava | 15 | species | bacteria | bacteria | 33053 |
| yersinia mollaretii | 4 | species | bacteria | bacteria | 33060 |
| purpureocillium lilacinum | 30 | species | plants | fungi | 33203 |
| babesia gibsoni | 29 | species | invertebrates | protozoa | 33632 |
| kyasanur forest disease virus | 13 | species | viruses | viruses | 33743 |
| mycobacterium africanum | 28 | species | bacteria | bacteria | 33894 |
| enterococcus avium | 20 | species | bacteria | bacteria | 33945 |
| neisseria flava | 7 | species | bacteria | bacteria | 34026 |
| rahnella aquatilis | 21 | species | bacteria | bacteria | 34038 |
| moraxella atlantae | 5 | species | bacteria | bacteria | 34059 |
| moraxella caviae | 6 | species | bacteria | bacteria | 34060 |
| moraxella cuniculi | 4 | species | bacteria | bacteria | 34061 |
| moraxella osloensis | 16 | species | bacteria | bacteria | 34062 |
| streptobacillus moniliformis | 20 | species | bacteria | bacteria | 34105 |
| trichophyton schoenleinii | 12 | species | plants | fungi | 34386 |
| trichophyton tonsurans | 34 | species | plants | fungi | 34387 |
| trichophyton violaceum | 23 | species | plants | fungi | 34388 |
| epidermophyton floccosum | 29 | species | plants | fungi | 34391 |
| microsporum audouinii | 18 | species | plants | fungi | 34393 |
| colletotrichum dematium | 13 | species | plants | fungi | 34405 |
| basidiobolus ranarum | 18 | species | plants | fungi | 34480 |
| conidiobolus coronatus | 19 | species | plants | fungi | 34488 |
| paragonimus westermani | 20 | species | invertebrates | helminths | 34504 |
| bunyamwera virus | 31 | species | viruses | viruses | 35304 |
| california encephalitis virus | 28 | no rank | viruses | viruses | 35305 |
| bwamba virus | 3 | species | viruses | viruses | 35310 |
| nyando virus | 1 | no rank | viruses | viruses | 35316 |
| [eubacterium] brachy | 9 | species | bacteria | bacteria | 35517 |
| [eubacterium] nodatum | 17 | species | bacteria | bacteria | 35518 |
| mogibacterium timidum | 11 | species | bacteria | bacteria | 35519 |
| pelodera strongyloides | 9 | species | invertebrates | helminths | 35557 |
| citrobacter amalonaticus | 12 | species | bacteria | bacteria | 35703 |
| thielavia terrestris | 10 | species | plants | fungi | 35720 |
| corynebacterium kutscheri | 11 | species | bacteria | bacteria | 35755 |
| rickettsia africae | 20 | species | bacteria | bacteria | 35788 |
| rickettsia japonica | 14 | species | bacteria | bacteria | 35790 |
| rickettsia massiliae | 16 | species | bacteria | bacteria | 35791 |
| rickettsia sibirica | 14 | species | bacteria | bacteria | 35793 |
| helicobacter heilmannii | 37 | species | bacteria | bacteria | 35817 |
| helicobacter pullorum | 19 | species | bacteria | bacteria | 35818 |
| bilophila wadsworthia | 21 | species | bacteria | bacteria | 35833 |
| mucor circinelloides | 27 | species | plants | fungi | 36080 |
| trichuris trichiura | 51 | species | invertebrates | helminths | 36087 |
| plasmodium ovale | 24 | species | invertebrates | protozoa | 36330 |
| venezuelan equine encephalitis virus (strain everglades fe3-7c) | -3 | no rank | viruses | viruses | 36383 |
| rotavirus c | 33 | species | viruses | viruses | 36427 |
| penicillium commune | 18 | species | plants | fungi | 36653 |
| isoparorchis hypselobagri | 5 | species | invertebrates | helminths | 36663 |
| corynebacterium bovis | 27 | species | bacteria | bacteria | 36808 |
| mycobacterium abscessus | 38 | species | bacteria | bacteria | 36809 |
| mycobacterium genavense | 21 | species | bacteria | bacteria | 36812 |
| gordonia amarae | 22 | species | bacteria | bacteria | 36821 |