| human parainfluenza virus 2 | 37 | species | viruses | viruses | 11212 |
| human parainfluenza virus 3 | 51 | species | viruses | viruses | 11216 |
| measles virus | 119 | species | viruses | viruses | 11234 |
| human respiratory syncytial virus | 66 | species | viruses | viruses | 11250 |
| chandipura virus | 10 | species | viruses | viruses | 11272 |
| piry virus | 7 | species | viruses | viruses | 11274 |
| vesicular stomatitis virus | 177 | species | viruses | viruses | 11276 |
| rabies virus | 96 | species | viruses | viruses | 11292 |
| bovine ephemeral fever virus | 14 | species | viruses | viruses | 11303 |
| dhori virus | 24 | species | viruses | viruses | 11318 |
| influenza a virus | 135 | species | viruses | viruses | 11320 |
| influenza b virus | 57 | species | viruses | viruses | 11520 |
| influenza c virus | 48 | species | viruses | viruses | 11552 |
| thogoto virus | 37 | species | viruses | viruses | 11569 |
| punta toro virus | 28 | species | viruses | viruses | 11587 |
| rift valley fever virus | 41 | species | viruses | viruses | 11588 |
| dugbe virus | 10 | species | viruses | viruses | 11595 |
| hantaan virus | 61 | species | viruses | viruses | 11599 |
| seoul virus | 27 | species | viruses | viruses | 11608 |
| junin mammarenavirus | 31 | species | viruses | viruses | 11619 |
| lassa mammarenavirus | 41 | species | viruses | viruses | 11620 |
| lymphocytic choriomeningitis mammarenavirus | 148 | species | viruses | viruses | 11623 |
| machupo mammarenavirus | 18 | species | viruses | viruses | 11628 |
| human immunodeficiency virus 1 | 410 | species | viruses | viruses | 11676 |
| human immunodeficiency virus 2 | 399 | species | viruses | viruses | 11709 |
| human t-lymphotropic virus 1 | 137 | no rank | viruses | viruses | 11908 |
| norwalk virus | 73 | species | viruses | viruses | 11983 |
| human parechovirus 1 | 29 | no rank | viruses | viruses | 12063 |
| swine vesicular disease virus | 23 | no rank | viruses | viruses | 12075 |
| enterovirus d70 | 24 | no rank | viruses | viruses | 12090 |
| hepatovirus a | 95 | species | viruses | viruses | 12092 |
| encephalomyocarditis virus | 105 | no rank | viruses | viruses | 12104 |
| foot-and-mouth disease virus | 89 | species | viruses | viruses | 12110 |
| borna disease virus | 65 | species | viruses | viruses | 12455 |
| hepatitis delta virus | 89 | species | viruses | viruses | 12475 |
| dobrava-belgrade virus | 23 | species | viruses | viruses | 12506 |
| mokola virus | 26 | species | viruses | viruses | 12538 |
| omsk hemorrhagic fever virus | 8 | species | viruses | viruses | 12542 |
| dengue virus | 99 | species | viruses | viruses | 12637 |
| human parainfluenza virus 1 | 34 | species | viruses | viruses | 12730 |
| blastocystis hominis | 41 | species | plants | | 12968 |
| suttonella indologenes | 6 | species | bacteria | bacteria | 13276 |
| burkholderia mallei | 27 | species | bacteria | bacteria | 13373 |
| sphingomonas paucimobilis | 56 | species | bacteria | bacteria | 13689 |
| penicillium expansum | 46 | species | plants | fungi | 27334 |
| colletotrichum coccodes | 24 | species | plants | fungi | 27358 |
| fasciolopsis buski | 11 | species | invertebrates | helminths | 27845 |
| encephalitozoon hellem | 43 | species | plants | fungi | 27973 |
| acanthamoeba palestinensis | 9 | species | invertebrates | protozoa | 28015 |
| staphylococcus lugdunensis | 24 | species | bacteria | bacteria | 28035 |
| streptococcus mitis | 45 | species | bacteria | bacteria | 28037 |
| saccharopolyspora rectivirgula | 29 | species | bacteria | bacteria | 28042 |
| mycobacterium celatum | 16 | species | bacteria | bacteria | 28045 |
| campylobacter upsaliensis | 26 | species | bacteria | bacteria | 28080 |
| legionella anisa | 11 | species | bacteria | bacteria | 28082 |
| legionella birminghamensis | 1 | species | bacteria | bacteria | 28083 |
| legionella cherrii | 1 | species | bacteria | bacteria | 28084 |
| legionella cincinnatiensis | 4 | species | bacteria | bacteria | 28085 |
| legionella sainthelensi | 4 | species | bacteria | bacteria | 28087 |
| legionella wadsworthii | 1 | species | bacteria | bacteria | 28088 |
| acinetobacter lwoffii | 27 | species | bacteria | bacteria | 28090 |
| neisseria weaveri | 6 | species | bacteria | bacteria | 28091 |
| bacteroides eggerthii | 4 | species | bacteria | bacteria | 28111 |
| tannerella forsythia | 56 | species | bacteria | bacteria | 28112 |
| bacteroides heparinolyticus | 14 | species | bacteria | bacteria | 28113 |
| porphyromonas levii | 12 | species | bacteria | bacteria | 28114 |
| porphyromonas macacae | 16 | species | bacteria | bacteria | 28115 |
| bacteroides ovatus | 24 | species | bacteria | bacteria | 28116 |
| odoribacter splanchnicus | 4 | species | bacteria | bacteria | 28118 |
| bacteroides zoogleoformans | 5 | species | bacteria | bacteria | 28119 |
| fibrobacter intestinalis | 9 | species | bacteria | bacteria | 28122 |
| porphyromonas asaccharolytica | 22 | species | bacteria | bacteria | 28123 |
| porphyromonas endodontalis | 27 | species | bacteria | bacteria | 28124 |
| prevotella bivia | 20 | species | bacteria | bacteria | 28125 |
| prevotella buccae | 17 | species | bacteria | bacteria | 28126 |
| prevotella buccalis | 4 | species | bacteria | bacteria | 28127 |
| prevotella corporis | 6 | species | bacteria | bacteria | 28128 |
| prevotella denticola | 18 | species | bacteria | bacteria | 28129 |
| prevotella disiens | 8 | species | bacteria | bacteria | 28130 |
| prevotella intermedia | 65 | species | bacteria | bacteria | 28131 |
| prevotella melaninogenica | 28 | species | bacteria | bacteria | 28132 |
| prevotella nigrescens | 37 | species | bacteria | bacteria | 28133 |
| prevotella oralis | 18 | species | bacteria | bacteria | 28134 |
| prevotella oris | 13 | species | bacteria | bacteria | 28135 |
| prevotella oulorum | 4 | species | bacteria | bacteria | 28136 |
| prevotella veroralis | 7 | species | bacteria | bacteria | 28137 |
| cronobacter sakazakii | 43 | species | bacteria | bacteria | 28141 |
| serratia proteamaculans | 17 | species | bacteria | bacteria | 28151 |
| yersinia kristensenii | 11 | species | bacteria | bacteria | 28152 |
| leptospira noguchii | 5 | species | bacteria | bacteria | 28182 |
| leptospira santarosai | 7 | species | bacteria | bacteria | 28183 |
| leptospira weilii | 3 | species | bacteria | bacteria | 28184 |
| capnocytophaga canimorsus | 18 | species | bacteria | bacteria | 28188 |
| capnocytophaga cynodegmi | 4 | species | bacteria | bacteria | 28189 |
| arcobacter butzleri | 37 | species | bacteria | bacteria | 28197 |
| arcobacter cryaerophilus | 26 | species | bacteria | bacteria | 28198 |
| arcanobacterium haemolyticum | 22 | species | bacteria | bacteria | 28264 |
| neisseria subflava | 14 | species | bacteria | bacteria | 28449 |
| burkholderia pseudomallei | 61 | species | bacteria | bacteria | 28450 |
| moniezia expansa | 31 | species | invertebrates | helminths | 28841 |