| alaria americana | 2 | species | | helminths | |
| candiru virus complex | -3 | no rank | | viruses | |
| carneocephallus brevicaea | -1 | species | | helminths | |
| diphyllobothrium dalliae | -3 | species | | helminths | |
| trichostrongylus orientalis | 1 | species | | helminths | |
| rhinocladiella obovoidea | -3 | species | | fungi | |
| rhinocladiella schulzeri | 1 | species | | fungi | |
| rotavirus e | 4 | species | | viruses | |
| raillietina demerariensis | 1 | species | | helminths | |
| rhabditis pellio | 5 | species | | helminths | |
| nematodirus abnormalis | 2 | species | | helminths | |
| metagonimus minutus | -3 | species | | helminths | |
| mansonella streptocerca | 5 | species | | helminths | |
| gigantobilharzia sturniae | -3 | species | | helminths | |
| calodium hepaticum | 4 | species | | helminths | |
| centrocestus armatus | 3 | species | | helminths | |
| diplogonoporus fukuokaensis | -3 | species | | helminths | |
| diphyllobothrium hians | -3 | species | | helminths | |
| diphyllobothrium orcini | -3 | species | | helminths | |
| cylindrocarpon vaginae | -3 | species | | fungi | |
| multiceps brauni | -3 | species | | helminths | |
| nosema connori | 4 | species | | fungi | |
| mammomonogamus nasicola | 1 | species | | helminths | |
| mesocestoides variabilis | 2 | species | | helminths | |
| mammomonogamus laryngeus | 2 | species | | helminths | |
| dissitimurus exedrus | -3 | species | | fungi | |
| echinostoma macrorchis | 2 | species | | helminths | |
| fibricola seoulensis | 1 | species | | helminths | |
| episthmium caninum | -3 | species | | helminths | |
| fasciola indica | 3 | species | | helminths | |
| physaloptera transfuga | -3 | species | | helminths | |
| paragonimus hueitungensis | 1 | species | | helminths | |
| nosema ceylonensis | -3 | species | | fungi | |
| metorchis conjunctus | 3 | species | | helminths | |
| echinochasmus perfoliatus | 3 | species | | helminths | |
| diphyllobothrium theileri | -3 | species | | helminths | |
| heterophyes dispar | 1 | species | | helminths | |
| multiceps serialis | 4 | species | | helminths | |
| moraxella liquefaciens | 2 | species | | bacteria | |
| multiceps longihamatus | 1 | species | | helminths | |
| mansonella rodhaini | -3 | species | | helminths | |
| meningonema peruzii | 1 | species | | helminths | |
| dirofilaria subdermata | 2 | species | | helminths | |
| diphyllobothrium elegans | 1 | species | | helminths | |
| echinostoma ilocanum | 1 | species | | helminths | |
| echinostoma jassyense | -1 | species | invertebrates | helminths | |
| micronema deletrix | 16 | species | plants | | |
| ascocotyle | 13 | genus | invertebrates | helminths | |
| borreliella burgdorferi | 144 | species | bacteria | bacteria | 139 |
| borrelia hermsii | 44 | species | bacteria | bacteria | 140 |
| borrelia parkeri | 13 | species | bacteria | bacteria | 141 |
| borrelia turicatae | 21 | species | bacteria | bacteria | 142 |
| treponema pallidum | 87 | species | bacteria | bacteria | 160 |
| leptospira interrogans | 49 | species | bacteria | bacteria | 173 |
| leptospira borgpetersenii | 18 | species | bacteria | bacteria | 174 |
| campylobacter coli | 65 | species | bacteria | bacteria | 195 |
| campylobacter fetus | 57 | species | bacteria | bacteria | 196 |
| campylobacter jejuni | 130 | species | bacteria | bacteria | 197 |
| campylobacter hyointestinalis | 23 | species | bacteria | bacteria | 198 |
| campylobacter concisus | 20 | species | bacteria | bacteria | 199 |
| campylobacter curvus | 11 | species | bacteria | bacteria | 200 |
| campylobacter lari | 35 | species | bacteria | bacteria | 201 |
| campylobacter rectus | 41 | species | bacteria | bacteria | 203 |
| campylobacter sputorum | 22 | species | bacteria | bacteria | 206 |
| helicobacter pylori | 246 | species | bacteria | bacteria | 210 |
| helicobacter cinaedi | 27 | species | bacteria | bacteria | 213 |
| helicobacter fennelliae | 16 | species | bacteria | bacteria | 215 |
| elizabethkingia meningoseptica | 44 | species | bacteria | bacteria | 238 |
| chryseobacterium balustinum | 10 | species | bacteria | bacteria | 246 |
| myroides odoratus | 15 | species | bacteria | bacteria | 256 |
| francisella tularensis | 74 | species | bacteria | bacteria | 263 |
| comamonas testosteroni | 50 | species | bacteria | bacteria | 285 |
| pseudomonas aeruginosa | 243 | species | bacteria | bacteria | 287 |
| burkholderia cepacia | 107 | species | bacteria | bacteria | 292 |
| brevundimonas diminuta | 54 | species | bacteria | bacteria | 293 |
| pseudomonas fluorescens | 122 | species | bacteria | bacteria | 294 |
| pseudomonas putida | 133 | species | bacteria | bacteria | 303 |
| pseudomonas stutzeri | 76 | species | bacteria | bacteria | 316 |
| ralstonia pickettii | 44 | species | bacteria | bacteria | 329 |
| pseudomonas pseudoalcaligenes | 41 | species | bacteria | bacteria | 330 |
| legionella pneumophila | 133 | species | bacteria | bacteria | 446 |
| fluoribacter bozemanae | 16 | species | bacteria | bacteria | 447 |
| legionella hackeliae | 3 | species | bacteria | bacteria | 449 |
| legionella longbeachae | 16 | species | bacteria | bacteria | 450 |
| tatlockia micdadei | 25 | species | bacteria | bacteria | 451 |
| legionella feeleii | 8 | species | bacteria | bacteria | 453 |
| legionella jordanis | 7 | species | bacteria | bacteria | 456 |
| legionella rubrilucens | 3 | species | bacteria | bacteria | 458 |
| fluoribacter dumoffii | 11 | species | bacteria | bacteria | 463 |
| fluoribacter gormanii | 14 | species | bacteria | bacteria | 464 |
| legionella maceachernii | 7 | species | bacteria | bacteria | 466 |
| acinetobacter baumannii | 88 | species | bacteria | bacteria | 470 |
| acinetobacter calcoaceticus | 77 | species | bacteria | bacteria | 471 |
| moraxella bovis | 35 | species | bacteria | bacteria | 476 |
| moraxella lacunata | 14 | species | bacteria | bacteria | 477 |
| moraxella nonliquefaciens | 16 | species | bacteria | bacteria | 478 |
| moraxella catarrhalis | 87 | species | bacteria | bacteria | 480 |
| neisseria cinerea | 17 | species | bacteria | bacteria | 483 |
| neisseria flavescens | 11 | species | bacteria | bacteria | 484 |
| neisseria gonorrhoeae | 136 | species | bacteria | bacteria | 485 |