| megasphaera | 44 | genus | bacteria | | 906 |
| neodiplostomum | 9 | genus | invertebrates | | 84101 |
| gymnophalloides | 9 | genus | invertebrates | helminths | 87179 |
| ornithobilharzia | 8 | genus | invertebrates | | 100597 |
| picobirnavirus | 17 | genus | viruses | | 104394 |
| marburgvirus | 23 | genus | viruses | | 186537 |
| eustrongylides | 15 | genus | invertebrates | | 513041 |
| rictularia | 5 | genus | | | |
| cheilospirura | 5 | genus | | | |
| bolbosoma | 8 | genus | | | 1155702 |
| ascocotyle | 13 | genus | invertebrates | helminths | |
| human t-lymphotropic virus 1 | 137 | no rank | viruses | viruses | 11908 |
| human parechovirus 1 | 29 | no rank | viruses | viruses | 12063 |
| swine vesicular disease virus | 23 | no rank | viruses | viruses | 12075 |
| enterovirus d70 | 24 | no rank | viruses | viruses | 12090 |
| encephalomyocarditis virus | 105 | no rank | viruses | viruses | 12104 |
| human coronavirus oc43 | 29 | no rank | viruses | viruses | 31631 |
| ockelbo virus | 14 | no rank | viruses | viruses | 31699 |
| buffalopox virus | 7 | no rank | viruses | viruses | 32605 |
| california encephalitis virus | 28 | no rank | viruses | viruses | 35305 |
| nyando virus | 1 | no rank | viruses | viruses | 35316 |
| venezuelan equine encephalitis virus (strain everglades fe3-7c) | -3 | no rank | viruses | viruses | 36383 |
| human parechovirus 2 | 16 | no rank | viruses | viruses | 39085 |
| kemerovo virus | 8 | no rank | viruses | viruses | 40064 |
| enterovirus d68 | 8 | no rank | viruses | viruses | 42789 |
| batken virus | 2 | no rank | viruses | viruses | 53017 |
| bussuquara virus | 2 | no rank | viruses | viruses | 64304 |
| hu39694 virus | -3 | no rank | viruses | viruses | 69244 |
| lechiguanas virus | 1 | no rank | viruses | viruses | 69245 |
| oran virus | -3 | no rank | viruses | viruses | 69247 |
| igbo ora virus | 5 | no rank | viruses | viruses | 79899 |
| salmonella enterica subsp. enterica serovar typhi | 85 | no rank | bacteria | bacteria | 90370 |
| salmonella enterica subsp. enterica serovar typhimurium | 77 | no rank | bacteria | bacteria | 90371 |
| salmonella enterica subsp. enterica serovar enteritidis | 87 | no rank | bacteria | bacteria | 149539 |
| seal parapoxvirus | 6 | no rank | viruses | viruses | 187984 |
| microsporum gypseum | 32 | no rank | plants | fungi | 489714 |
| curvularia pallescens | 7 | no rank | plants | fungi | 491261 |
| lasiodiplodia theobromae | 20 | no rank | plants | fungi | 502207 |
| salehabad virus | -3 | no rank | viruses | viruses | 904699 |
| monongahela virus | 3 | no rank | | viruses | 2259728 |
| far eastern tick-borne encephalitis virus | 1 | no rank | | viruses | |
| candiru virus complex | -3 | no rank | | viruses | |
| borreliella burgdorferi | 144 | species | bacteria | bacteria | 139 |
| borrelia hermsii | 44 | species | bacteria | bacteria | 140 |
| borrelia parkeri | 13 | species | bacteria | bacteria | 141 |
| borrelia turicatae | 21 | species | bacteria | bacteria | 142 |
| treponema pallidum | 87 | species | bacteria | bacteria | 160 |
| leptospira interrogans | 49 | species | bacteria | bacteria | 173 |
| leptospira borgpetersenii | 18 | species | bacteria | bacteria | 174 |
| campylobacter coli | 65 | species | bacteria | bacteria | 195 |
| campylobacter fetus | 57 | species | bacteria | bacteria | 196 |
| campylobacter jejuni | 130 | species | bacteria | bacteria | 197 |
| campylobacter hyointestinalis | 23 | species | bacteria | bacteria | 198 |
| campylobacter concisus | 20 | species | bacteria | bacteria | 199 |
| campylobacter curvus | 11 | species | bacteria | bacteria | 200 |
| campylobacter lari | 35 | species | bacteria | bacteria | 201 |
| campylobacter rectus | 41 | species | bacteria | bacteria | 203 |
| campylobacter sputorum | 22 | species | bacteria | bacteria | 206 |
| helicobacter pylori | 246 | species | bacteria | bacteria | 210 |
| helicobacter cinaedi | 27 | species | bacteria | bacteria | 213 |
| helicobacter fennelliae | 16 | species | bacteria | bacteria | 215 |
| elizabethkingia meningoseptica | 44 | species | bacteria | bacteria | 238 |
| chryseobacterium balustinum | 10 | species | bacteria | bacteria | 246 |
| myroides odoratus | 15 | species | bacteria | bacteria | 256 |
| francisella tularensis | 74 | species | bacteria | bacteria | 263 |
| comamonas testosteroni | 50 | species | bacteria | bacteria | 285 |
| pseudomonas aeruginosa | 243 | species | bacteria | bacteria | 287 |
| burkholderia cepacia | 107 | species | bacteria | bacteria | 292 |
| brevundimonas diminuta | 54 | species | bacteria | bacteria | 293 |
| pseudomonas fluorescens | 122 | species | bacteria | bacteria | 294 |
| pseudomonas putida | 133 | species | bacteria | bacteria | 303 |
| pseudomonas stutzeri | 76 | species | bacteria | bacteria | 316 |
| ralstonia pickettii | 44 | species | bacteria | bacteria | 329 |
| pseudomonas pseudoalcaligenes | 41 | species | bacteria | bacteria | 330 |
| legionella pneumophila | 133 | species | bacteria | bacteria | 446 |
| fluoribacter bozemanae | 16 | species | bacteria | bacteria | 447 |
| legionella hackeliae | 3 | species | bacteria | bacteria | 449 |
| legionella longbeachae | 16 | species | bacteria | bacteria | 450 |
| tatlockia micdadei | 25 | species | bacteria | bacteria | 451 |
| legionella feeleii | 8 | species | bacteria | bacteria | 453 |
| legionella jordanis | 7 | species | bacteria | bacteria | 456 |
| legionella rubrilucens | 3 | species | bacteria | bacteria | 458 |
| fluoribacter dumoffii | 11 | species | bacteria | bacteria | 463 |
| fluoribacter gormanii | 14 | species | bacteria | bacteria | 464 |
| legionella maceachernii | 7 | species | bacteria | bacteria | 466 |
| acinetobacter baumannii | 88 | species | bacteria | bacteria | 470 |
| acinetobacter calcoaceticus | 77 | species | bacteria | bacteria | 471 |
| moraxella bovis | 35 | species | bacteria | bacteria | 476 |
| moraxella lacunata | 14 | species | bacteria | bacteria | 477 |
| moraxella nonliquefaciens | 16 | species | bacteria | bacteria | 478 |
| moraxella catarrhalis | 87 | species | bacteria | bacteria | 480 |
| neisseria cinerea | 17 | species | bacteria | bacteria | 483 |
| neisseria flavescens | 11 | species | bacteria | bacteria | 484 |
| neisseria gonorrhoeae | 136 | species | bacteria | bacteria | 485 |
| neisseria lactamica | 31 | species | bacteria | bacteria | 486 |
| neisseria meningitidis | 130 | species | bacteria | bacteria | 487 |
| neisseria mucosa | 14 | species | bacteria | bacteria | 488 |
| neisseria sicca | 14 | species | bacteria | bacteria | 490 |
| neisseria elongata | 9 | species | bacteria | bacteria | 495 |
| kingella denitrificans | 9 | species | bacteria | bacteria | 502 |