| mycobacterium conspicuum | 2 | species | bacteria | bacteria | 44010 |
| paenibacillus alvei | 19 | species | bacteria | bacteria | 44250 |
| paenibacillus macerans | 27 | species | bacteria | bacteria | 44252 |
| borrelia persica | 5 | species | bacteria | bacteria | 44448 |
| borrelia recurrentis | 21 | species | bacteria | bacteria | 44449 |
| legionella lansingensis | 1 | species | bacteria | bacteria | 45067 |
| nocardia pseudobrasiliensis | 8 | species | bacteria | bacteria | 45979 |
| granulicatella adiacens | 17 | species | bacteria | bacteria | 46124 |
| abiotrophia defectiva | 17 | species | bacteria | bacteria | 46125 |
| parabacteroides merdae | 7 | species | bacteria | bacteria | 46503 |
| bacteroides stercoris | 7 | species | bacteria | bacteria | 46506 |
| clostridium chauvoei | 15 | species | bacteria | bacteria | 46867 |
| tsukamurella pulmonis | 5 | species | bacteria | bacteria | 47312 |
| bacteroides caccae | 9 | species | bacteria | bacteria | 47678 |
| [eubacterium] saphenum | 8 | species | bacteria | bacteria | 51123 |
| kluyvera ascorbata | 18 | species | bacteria | bacteria | 51288 |
| prevotella dentalis | 7 | species | bacteria | bacteria | 52227 |
| actinomyces georgiae | 5 | species | bacteria | bacteria | 52768 |
| actinomyces gerencseriae | 12 | species | bacteria | bacteria | 52769 |
| actinomyces meyeri | 12 | species | bacteria | bacteria | 52773 |
| enterococcus durans | 29 | species | bacteria | bacteria | 53345 |
| enterococcus mundtii | 18 | species | bacteria | bacteria | 53346 |
| raoultella ornithinolytica | 8 | species | bacteria | bacteria | 54291 |
| salmonella bongori | 18 | species | bacteria | bacteria | 54736 |
| mycobacterium mucogenicum | 11 | species | bacteria | bacteria | 56689 |
| tsukamurella tyrosinosolvens | 4 | species | bacteria | bacteria | 57704 |
| citrobacter braakii | 10 | species | bacteria | bacteria | 57706 |
| trueperella bernardiae | 8 | species | bacteria | bacteria | 59561 |
| enterobacter asburiae | 18 | species | bacteria | bacteria | 61645 |
| lelliottia amnigena | 12 | species | bacteria | bacteria | 61646 |
| pluralibacter gergoviae | 11 | species | bacteria | bacteria | 61647 |
| serratia ficaria | 10 | species | bacteria | bacteria | 61651 |
| serratia rubidaea | 10 | species | bacteria | bacteria | 61652 |
| corynebacterium ulcerans | 18 | species | bacteria | bacteria | 65058 |
| citrobacter farmeri | 4 | species | bacteria | bacteria | 67824 |
| citrobacter rodentium | 45 | species | bacteria | bacteria | 67825 |
| citrobacter sedlakii | 6 | species | bacteria | bacteria | 67826 |
| citrobacter werkmanii | 4 | species | bacteria | bacteria | 67827 |
| enterobacter cancerogenus | 13 | species | bacteria | bacteria | 69218 |
| enterococcus raffinosus | 16 | species | bacteria | bacteria | 71452 |
| achromobacter piechaudii | 11 | species | bacteria | bacteria | 72556 |
| collinsella aerofaciens | 19 | species | bacteria | bacteria | 74426 |
| mannheimia haemolytica | 67 | species | bacteria | bacteria | 75985 |
| alloprevotella tannerae | 7 | species | bacteria | bacteria | 76122 |
| prevotella enoeca | 2 | species | bacteria | bacteria | 76123 |
| streptococcus constellatus | 25 | species | bacteria | bacteria | 76860 |
| streptomyces somaliensis | 10 | species | bacteria | bacteria | 78355 |
| delftia acidovorans | 40 | species | bacteria | bacteria | 80866 |
| centipeda periodontii | 7 | species | bacteria | bacteria | 82203 |
| tatumella ptyseos | 2 | species | bacteria | bacteria | 82987 |
| serratia plymuthica | 24 | species | bacteria | bacteria | 82996 |
| eubacterium multiforme | 2 | species | bacteria | bacteria | 83339 |
| chlamydia psittaci | 63 | species | bacteria | bacteria | 83554 |
| chlamydia pneumoniae | 143 | species | bacteria | bacteria | 83558 |
| eggerthella lenta | 23 | species | bacteria | bacteria | 84112 |
| achromobacter xylosoxidans | 45 | species | bacteria | bacteria | 85698 |
| moraxella lincolnii | 1 | species | bacteria | bacteria | 90241 |
| oligella ureolytica | 3 | species | bacteria | bacteria | 90244 |
| oligella urethralis | 12 | species | bacteria | bacteria | 90245 |
| salmonella enterica subsp. enterica serovar typhi | 85 | no rank | bacteria | bacteria | 90370 |
| salmonella enterica subsp. enterica serovar typhimurium | 77 | no rank | bacteria | bacteria | 90371 |
| edwardsiella hoshinae | 5 | species | bacteria | bacteria | 93378 |
| proteus penneri | 16 | species | bacteria | bacteria | 102862 |
| actinomadura pelletieri | 8 | species | bacteria | bacteria | 111805 |
| pseudoramibacter alactolyticus | 13 | species | bacteria | bacteria | 113287 |
| providencia alcalifaciens | 15 | species | bacteria | bacteria | 126385 |
| actinomyces radingae | 5 | species | bacteria | bacteria | 131110 |
| actinomyces turicensis | 8 | species | bacteria | bacteria | 131111 |
| citrobacter youngae | 5 | species | bacteria | bacteria | 133448 |
| selenomonas dianae | 3 | species | bacteria | bacteria | 135079 |
| selenomonas flueggei | 5 | species | bacteria | bacteria | 135080 |
| selenomonas infelix | 6 | species | bacteria | bacteria | 135082 |
| selenomonas noxia | 11 | species | bacteria | bacteria | 135083 |
| filifactor alocis | 16 | species | bacteria | bacteria | 143361 |
| [eubacterium] sulci | 5 | species | bacteria | bacteria | 143393 |
| leifsonia aquatica | 19 | species | bacteria | bacteria | 144185 |
| salmonella enterica subsp. enterica serovar enteritidis | 87 | no rank | bacteria | bacteria | 149539 |
| cedecea davisae | 3 | species | bacteria | bacteria | 158484 |
| cedecea neteri | 2 | species | bacteria | bacteria | 158822 |
| cedecea lapagei | 2 | species | bacteria | bacteria | 158823 |
| enterobacter hormaechei | 11 | species | bacteria | bacteria | 158836 |
| megamonas hypermegale | 5 | species | bacteria | bacteria | 158847 |
| pasteurella caballi | 6 | species | bacteria | bacteria | 243701 |
| [bacteroides] pectinophilus | 1 | species | bacteria | bacteria | 384638 |
| bacteroides galacturonicus | 1 | species | bacteria | bacteria | 384639 |
| lachnoanaerobaculum saburreum | 14 | species | bacteria | bacteria | 467210 |
| selenomonas artemidis | 6 | species | bacteria | bacteria | 671224 |
| wanowrie virus | 1 | species | | viruses | |
| yogue virus | -3 | species | | viruses | 1712572 |
| trichostrongylus skrjabini | -3 | species | | helminths | |
| trichostrongylus calcaratus | 2 | species | | helminths | |
| variant creutzfeldt-jakob disease agent | 31 | species | | | |
| brugia guyanensis | 2 | species | | helminths | |
| bertiella mucronata | 1 | species | | helminths | |
| treponema carateum | 1 | species | | bacteria | |
| trichobilharzia brevis | -3 | species | | helminths | |
| achillurbainia recondita | -3 | species | | helminths | |
| tamdy virus | 1 | species | | viruses | 1453410 |
| spirillum minus | 5 | species | | bacteria | |
| retortamonas intestinalis | 1 | species | | protozoa | |