| alloprevotella tannerae | 7 | species | bacteria | bacteria | 76122 |
| prevotella enoeca | 2 | species | bacteria | bacteria | 76123 |
| streptococcus constellatus | 25 | species | bacteria | bacteria | 76860 |
| streptomyces somaliensis | 10 | species | bacteria | bacteria | 78355 |
| delftia acidovorans | 40 | species | bacteria | bacteria | 80866 |
| centipeda periodontii | 7 | species | bacteria | bacteria | 82203 |
| tatumella ptyseos | 2 | species | bacteria | bacteria | 82987 |
| serratia plymuthica | 24 | species | bacteria | bacteria | 82996 |
| eubacterium multiforme | 2 | species | bacteria | bacteria | 83339 |
| chlamydia psittaci | 63 | species | bacteria | bacteria | 83554 |
| chlamydia pneumoniae | 143 | species | bacteria | bacteria | 83558 |
| eggerthella lenta | 23 | species | bacteria | bacteria | 84112 |
| achromobacter xylosoxidans | 45 | species | bacteria | bacteria | 85698 |
| moraxella lincolnii | 1 | species | bacteria | bacteria | 90241 |
| oligella ureolytica | 3 | species | bacteria | bacteria | 90244 |
| oligella urethralis | 12 | species | bacteria | bacteria | 90245 |
| salmonella enterica subsp. enterica serovar typhi | 85 | no rank | bacteria | bacteria | 90370 |
| salmonella enterica subsp. enterica serovar typhimurium | 77 | no rank | bacteria | bacteria | 90371 |
| edwardsiella hoshinae | 5 | species | bacteria | bacteria | 93378 |
| proteus penneri | 16 | species | bacteria | bacteria | 102862 |
| actinomadura pelletieri | 8 | species | bacteria | bacteria | 111805 |
| pseudoramibacter alactolyticus | 13 | species | bacteria | bacteria | 113287 |
| providencia alcalifaciens | 15 | species | bacteria | bacteria | 126385 |
| actinomyces radingae | 5 | species | bacteria | bacteria | 131110 |
| actinomyces turicensis | 8 | species | bacteria | bacteria | 131111 |
| citrobacter youngae | 5 | species | bacteria | bacteria | 133448 |
| selenomonas dianae | 3 | species | bacteria | bacteria | 135079 |
| selenomonas flueggei | 5 | species | bacteria | bacteria | 135080 |
| selenomonas infelix | 6 | species | bacteria | bacteria | 135082 |
| selenomonas noxia | 11 | species | bacteria | bacteria | 135083 |
| filifactor alocis | 16 | species | bacteria | bacteria | 143361 |
| [eubacterium] sulci | 5 | species | bacteria | bacteria | 143393 |
| leifsonia aquatica | 19 | species | bacteria | bacteria | 144185 |
| salmonella enterica subsp. enterica serovar enteritidis | 87 | no rank | bacteria | bacteria | 149539 |
| cedecea davisae | 3 | species | bacteria | bacteria | 158484 |
| cedecea neteri | 2 | species | bacteria | bacteria | 158822 |
| cedecea lapagei | 2 | species | bacteria | bacteria | 158823 |
| enterobacter hormaechei | 11 | species | bacteria | bacteria | 158836 |
| megamonas hypermegale | 5 | species | bacteria | bacteria | 158847 |
| pasteurella caballi | 6 | species | bacteria | bacteria | 243701 |
| [bacteroides] pectinophilus | 1 | species | bacteria | bacteria | 384638 |
| bacteroides galacturonicus | 1 | species | bacteria | bacteria | 384639 |
| lachnoanaerobaculum saburreum | 14 | species | bacteria | bacteria | 467210 |
| selenomonas artemidis | 6 | species | bacteria | bacteria | 671224 |
| treponema carateum | 1 | species | | bacteria | |
| spirillum minus | 5 | species | | bacteria | |
| moraxella liquefaciens | 2 | species | | bacteria | |
| megasphaera | 44 | genus | bacteria | | 906 |
| auxenochlorella protothecoides | 34 | species | plants | | 3075 |
| prototheca wickerhamii | 26 | species | plants | | 3111 |
| prototheca zopfii | 23 | species | plants | | 3112 |
| blastocystis hominis | 41 | species | plants | | 12968 |
| neodiplostomum | 9 | genus | invertebrates | | 84101 |
| rhinosporidium seeberi | 14 | species | invertebrates | | 90339 |
| ornithobilharzia | 8 | genus | invertebrates | | 100597 |
| picobirnavirus | 17 | genus | viruses | | 104394 |
| pythium insidiosum | 26 | species | plants | | 114742 |
| marburgvirus | 23 | genus | viruses | | 186537 |
| eustrongylides | 15 | genus | invertebrates | | 513041 |
| variant creutzfeldt-jakob disease agent | 31 | species | | | |
| rictularia | 5 | genus | | | |
| bovine spongiform encephalopathy agent | 101 | species | | | |
| cheilospirura | 5 | genus | | | |
| bolbosoma | 8 | genus | | | 1155702 |
| micronema deletrix | 16 | species | plants | | |