| listeria ivanovii | 32 | species | bacteria | bacteria | 1638 |
| listeria monocytogenes | 207 | species | bacteria | bacteria | 1639 |
| listeria seeligeri | 25 | species | bacteria | bacteria | 1640 |
| listeria welshimeri | 21 | species | bacteria | bacteria | 1643 |
| erysipelothrix rhusiopathiae | 28 | species | bacteria | bacteria | 1648 |
| actinomyces naeslundii | 49 | species | bacteria | bacteria | 1655 |
| actinomyces israelii | 25 | species | bacteria | bacteria | 1659 |
| corynebacterium diphtheriae | 64 | species | bacteria | bacteria | 1717 |
| corynebacterium xerosis | 21 | species | bacteria | bacteria | 1725 |
| propionibacterium acnes | 77 | species | bacteria | bacteria | 1747 |
| mycobacterium avium | 125 | species | bacteria | bacteria | 1764 |
| mycobacterium bovis | 132 | species | bacteria | bacteria | 1765 |
| mycobacterium fortuitum | 60 | species | bacteria | bacteria | 1766 |
| mycobacterium kansasii | 49 | species | bacteria | bacteria | 1768 |
| mycobacterium leprae | 95 | species | bacteria | bacteria | 1769 |
| mycobacterium marinum | 51 | species | bacteria | bacteria | 1781 |
| mycobacterium scrofulaceum | 31 | species | bacteria | bacteria | 1783 |
| mycobacterium simiae | 25 | species | bacteria | bacteria | 1784 |
| mycobacterium szulgai | 18 | species | bacteria | bacteria | 1787 |
| mycobacterium xenopi | 34 | species | bacteria | bacteria | 1789 |
| mycobacterium ulcerans | 46 | species | bacteria | bacteria | 1809 |
| nocardia asteroides | 51 | species | bacteria | bacteria | 1824 |
| rothia dentocariosa | 19 | species | bacteria | bacteria | 2047 |
| mycoplasma capricolum | 43 | species | bacteria | bacteria | 2095 |
| mycoplasma mycoides | 38 | species | bacteria | bacteria | 2102 |
| mycoplasma pneumoniae | 93 | species | bacteria | bacteria | 2104 |
| xylella fastidiosa | 46 | species | bacteria | bacteria | 2371 |
| peptococcus niger | 8 | species | bacteria | bacteria | 2741 |
| alexandrium tamarense | 35 | species | plants | protozoa | 2926 |
| abrus precatorius | 27 | species | plants | | 3816 |
| ricinus communis | 104 | species | plants | | 3988 |
| nicotiana tabacum | 304 | species | plants | | 4097 |
| pichia kudriavzevii | 67 | species | plants | fungi | 4909 |
| histoplasma capsulatum | 72 | species | plants | fungi | 5037 |
| blastomyces dermatitidis | 50 | species | plants | fungi | 5039 |
| aspergillus flavus | 81 | species | plants | fungi | 5059 |
| aspergillus niger | 110 | species | plants | fungi | 5061 |
| candida albicans | 181 | species | plants | fungi | 5476 |
| coccidioides immitis | 54 | species | plants | fungi | 5501 |
| fusarium oxysporum | 93 | species | plants | fungi | 5507 |
| fusarium graminearum | 56 | species | plants | fungi | 5518 |
| leishmania braziliensis | 52 | species | invertebrates | protozoa | 5660 |
| leishmania donovani | 98 | species | invertebrates | protozoa | 5661 |
| leishmania tropica | 49 | species | invertebrates | protozoa | 5666 |
| leishmania guyanensis | 16 | species | invertebrates | protozoa | 5670 |
| leishmania lainsoni | 8 | species | invertebrates | protozoa | 5677 |
| leishmania naiffi | 3 | species | invertebrates | protozoa | 5678 |
| leishmania panamensis | 17 | species | invertebrates | protozoa | 5679 |
| leishmania shawi | 5 | species | invertebrates | protozoa | 5680 |
| leishmania peruviana | 13 | species | invertebrates | protozoa | 5681 |
| leishmania pifanoi | 17 | species | invertebrates | protozoa | 5682 |
| trypanosoma cruzi | 130 | species | invertebrates | protozoa | 5693 |
| giardia intestinalis | 53 | species | invertebrates | protozoa | 5741 |
| acanthamoeba castellanii | 78 | species | invertebrates | protozoa | 5755 |
| acanthamoeba polyphaga | 40 | species | invertebrates | protozoa | 5757 |
| entamoeba histolytica | 98 | species | invertebrates | protozoa | 5759 |
| naegleria fowleri | 33 | species | invertebrates | protozoa | 5763 |
| cryptosporidium parvum | 92 | species | invertebrates | protozoa | 5807 |
| toxoplasma gondii | 148 | species | invertebrates | protozoa | 5811 |
| plasmodium falciparum | 209 | species | invertebrates | protozoa | 5833 |
| plasmodium vivax | 80 | species | invertebrates | protozoa | 5855 |
| babesia microti | 53 | species | invertebrates | protozoa | 5868 |
| encephalitozoon cuniculi | 58 | species | plants | fungi | 6035 |
| taenia solium | 55 | species | invertebrates | helminths | 6204 |
| echinococcus granulosus | 61 | species | invertebrates | helminths | 6210 |
| strongyloides stercoralis | 48 | species | invertebrates | helminths | 6248 |
| ascaris lumbricoides | 69 | species | invertebrates | helminths | 6252 |
| ascaris suum | 65 | species | invertebrates | helminths | 6253 |
| baylisascaris procyonis | 22 | species | invertebrates | helminths | 6259 |
| baylisascaris transfuga | 5 | species | invertebrates | helminths | 6260 |
| angiostrongylus cantonensis | 35 | species | invertebrates | helminths | 6313 |
| trichinella spiralis | 78 | species | invertebrates | helminths | 6334 |
| trichinella nativa | 22 | species | invertebrates | helminths | 6335 |
| trichinella nelsoni | 14 | species | invertebrates | helminths | 6336 |
| trichinella pseudospiralis | 28 | species | invertebrates | helminths | 6337 |
| cowpox virus | 71 | species | viruses | viruses | 10243 |
| monkeypox virus | 35 | species | viruses | viruses | 10244 |
| vaccinia virus | 197 | species | viruses | viruses | 10245 |
| variola virus | 80 | species | viruses | viruses | 10255 |
| sheeppox virus | 10 | species | viruses | viruses | 10266 |
| molluscum contagiosum virus | 36 | species | viruses | viruses | 10279 |
| human herpesvirus 1 | 171 | species | viruses | viruses | 10298 |
| human herpesvirus 2 | 96 | species | viruses | viruses | 10310 |
| macacine herpesvirus 1 | 25 | species | viruses | viruses | 10325 |
| human herpesvirus 3 | 113 | species | viruses | viruses | 10335 |
| human herpesvirus 5 | 159 | species | viruses | viruses | 10359 |
| human herpesvirus 6 | 94 | species | viruses | viruses | 10368 |
| human herpesvirus 7 | 48 | species | viruses | viruses | 10372 |
| human herpesvirus 4 | 257 | species | viruses | viruses | 10376 |
| hepatitis b virus | 246 | species | viruses | viruses | 10407 |
| african swine fever virus | 48 | species | viruses | viruses | 10497 |
| human papillomavirus | 235 | species | viruses | viruses | 10566 |
| jc polyomavirus | 89 | species | viruses | viruses | 10632 |
| rice tungro bacilliform virus | 21 | species | viruses | viruses | 10654 |
| human parvovirus b19 | 81 | species | viruses | viruses | 10798 |
| adeno-associated virus - 2 | 79 | species | viruses | viruses | 10804 |
| adeno-associated virus 2h | -1 | no rank | viruses | viruses | 10805 |
| african cassava mosaic virus | 55 | species | viruses | viruses | 10817 |
| wheat dwarf virus | 42 | species | viruses | viruses | 10834 |
| rice gall dwarf virus | 11 | species | viruses | viruses | 10986 |