| maize rough dwarf virus | 13 | species | viruses | viruses | 10989 |
| rice black streaked dwarf virus | 14 | species | viruses | viruses | 10990 |
| rice dwarf virus | 29 | species | viruses | viruses | 10991 |
| eastern equine encephalitis virus | 29 | species | viruses | viruses | 11021 |
| ross river virus | 48 | species | viruses | viruses | 11029 |
| sindbis virus | 107 | species | viruses | viruses | 11034 |
| venezuelan equine encephalitis virus | 54 | species | viruses | viruses | 11036 |
| western equine encephalitis virus | 30 | species | viruses | viruses | 11039 |
| rubella virus | 64 | species | viruses | viruses | 11041 |
| dengue virus 1 | 29 | no rank | viruses | viruses | 11053 |
| dengue virus 2 | 61 | no rank | viruses | viruses | 11060 |
| dengue virus 3 | 26 | no rank | viruses | viruses | 11069 |
| dengue virus 4 | 27 | no rank | viruses | viruses | 11070 |
| japanese encephalitis virus | 83 | species | viruses | viruses | 11072 |
| murray valley encephalitis virus | 28 | species | viruses | viruses | 11079 |
| st. louis encephalitis virus | 38 | species | viruses | viruses | 11080 |
| west nile virus | 97 | species | viruses | viruses | 11082 |
| powassan virus | 11 | species | viruses | viruses | 11083 |
| tick-borne encephalitis virus | 55 | species | viruses | viruses | 11084 |
| louping ill virus | 14 | species | viruses | viruses | 11086 |
| tick-borne encephalitis virus (strain sofjin) | -1 | no rank | viruses | viruses | 11087 |
| yellow fever virus | 83 | species | viruses | viruses | 11089 |
| kumlinge virus | 2 | no rank | viruses | viruses | 11092 |
| classical swine fever virus | 84 | species | viruses | viruses | 11096 |
| hepatitis c virus | 289 | species | viruses | viruses | 11103 |
| human coronavirus 229e | 39 | species | viruses | viruses | 11137 |
| mumps virus | 61 | species | viruses | viruses | 11161 |
| newcastle disease virus | 93 | species | viruses | viruses | 11176 |
| human parainfluenza virus 3 | 51 | species | viruses | viruses | 11216 |
| measles virus | 119 | species | viruses | viruses | 11234 |
| rinderpest virus | 39 | species | viruses | viruses | 11241 |
| human respiratory syncytial virus | 66 | species | viruses | viruses | 11250 |
| marburg marburgvirus | 17 | species | viruses | viruses | 11269 |
| vesicular stomatitis virus | 177 | species | viruses | viruses | 11276 |
| rabies virus | 96 | species | viruses | viruses | 11292 |
| unidentified influenza virus | 240 | species | viruses | viruses | 11309 |
| influenza a virus | 135 | species | viruses | viruses | 11320 |
| influenza b virus | 57 | species | viruses | viruses | 11520 |
| influenza c virus | 48 | species | viruses | viruses | 11552 |
| la crosse virus | 40 | no rank | viruses | viruses | 11577 |
| rift valley fever virus | 41 | species | viruses | viruses | 11588 |
| hantaan virus | 61 | species | viruses | viruses | 11599 |
| seoul virus | 27 | species | viruses | viruses | 11608 |
| tomato spotted wilt virus | 48 | species | viruses | viruses | 11613 |
| junin mammarenavirus | 31 | species | viruses | viruses | 11619 |
| lassa mammarenavirus | 41 | species | viruses | viruses | 11620 |
| lymphocytic choriomeningitis mammarenavirus | 148 | species | viruses | viruses | 11623 |
| machupo mammarenavirus | 18 | species | viruses | viruses | 11628 |
| human immunodeficiency virus 1 | 410 | species | viruses | viruses | 11676 |
| human immunodeficiency virus 2 | 399 | species | viruses | viruses | 11709 |
| human t-lymphotropic virus 1 | 137 | no rank | viruses | viruses | 11908 |
| human t-lymphotropic virus 2 | 60 | no rank | viruses | viruses | 11909 |
| rabbit hemorrhagic disease virus | 37 | species | viruses | viruses | 11976 |
| norwalk virus | 73 | species | viruses | viruses | 11983 |
| barley yellow dwarf virus | 47 | species | viruses | viruses | 12037 |
| soybean dwarf virus | 12 | species | viruses | viruses | 12049 |
| coxsackievirus a9 | 36 | no rank | viruses | viruses | 12067 |
| swine vesicular disease virus | 23 | no rank | viruses | viruses | 12075 |
| coxsackievirus a24 | 14 | no rank | viruses | viruses | 12089 |
| enterovirus d70 | 24 | no rank | viruses | viruses | 12090 |
| foot-and-mouth disease virus | 89 | species | viruses | viruses | 12110 |
| southern bean mosaic virus | 29 | species | viruses | viruses | 12139 |
| potato virus x | 71 | species | viruses | viruses | 12183 |
| maize dwarf mosaic virus | 24 | species | viruses | viruses | 12203 |
| plum pox virus | 57 | species | viruses | viruses | 12211 |
| potato virus y | 52 | species | viruses | viruses | 12216 |
| soybean mosaic virus | 32 | species | viruses | viruses | 12222 |
| sugarcane mosaic virus | 23 | species | viruses | viruses | 12224 |
| zucchini yellow mosaic virus | 32 | species | viruses | viruses | 12232 |
| barley stripe mosaic virus | 32 | species | viruses | viruses | 12327 |
| maize stripe virus | 18 | species | viruses | viruses | 12330 |
| rice stripe virus | 118 | species | viruses | viruses | 12331 |
| borna disease virus | 65 | species | viruses | viruses | 12455 |
| barley yellow mosaic virus | 25 | species | viruses | viruses | 12465 |
| barley mild mosaic virus | 19 | species | viruses | viruses | 12466 |
| dobrava-belgrade virus | 23 | species | viruses | viruses | 12506 |
| omsk hemorrhagic fever virus | 8 | species | viruses | viruses | 12542 |
| ectromelia virus | 47 | species | viruses | viruses | 12643 |
| human parainfluenza virus 1 | 34 | species | viruses | viruses | 12730 |
| blastocystis hominis | 41 | species | plants | | 12968 |
| burkholderia mallei | 27 | species | bacteria | bacteria | 13373 |
| encephalitozoon hellem | 43 | species | plants | fungi | 27973 |
| acinetobacter lwoffii | 27 | species | bacteria | bacteria | 28090 |
| capnocytophaga canimorsus | 18 | species | bacteria | bacteria | 28188 |
| soil-borne wheat mosaic virus | 21 | species | viruses | viruses | 28375 |
| burkholderia pseudomallei | 61 | species | bacteria | bacteria | 28450 |
| camelpox virus | 21 | species | viruses | viruses | 28873 |
| volepox virus | 1 | species | viruses | viruses | 28874 |
| rotavirus a | 58 | species | viruses | viruses | 28875 |
| rotavirus b | 22 | species | viruses | viruses | 28876 |
| salmonella enterica | 107 | species | bacteria | bacteria | 28901 |
| mycobacterium haemophilum | 26 | species | bacteria | bacteria | 29311 |
| staphylococcus saprophyticus | 42 | species | bacteria | bacteria | 29385 |
| brucella melitensis | 52 | species | bacteria | bacteria | 29459 |
| brucella suis | 38 | species | bacteria | bacteria | 29461 |
| sporothrix schenckii | 40 | species | plants | fungi | 29908 |
| enterocytozoon bieneusi | 54 | species | plants | fungi | 31281 |
| trypanosoma brucei gambiense | 41 | subspecies | invertebrates | protozoa | 31285 |
| trypanosoma brucei rhodesiense | 45 | subspecies | invertebrates | protozoa | 31286 |
| cacao swollen shoot virus | 10 | species | viruses | viruses | 31559 |