| peronosclerospora philippinensis | 4 | species | plants | | 886948 |
| aspergillus fumigatus | 109 | species | plants | fungi | 746128 |
| recombinant sars coronavirus | 3 | species | synthetic | | 575560 |
| enterococcus casseliflavus ec30 | -1 | no rank | bacteria | bacteria | 565652 |
| cystoisospora belli | 32 | species | invertebrates | protozoa | 482538 |
| synchytrium endobioticum | 12 | species | plants | fungi | 286115 |
| span 232 virus | -1 | no rank | viruses | viruses | 262397 |
| dolphin poxvirus 1 | -1 | no rank | viruses | viruses | 256962 |
| cryptosporidium hominis | 27 | species | invertebrates | protozoa | 237895 |
| adeno-associated virus 12 | -1 | species | viruses | viruses | 235458 |
| adeno-associated virus 11 | -1 | species | viruses | viruses | 235457 |
| adeno-associated virus 10 | 1 | species | viruses | viruses | 235456 |
| adeno-associated virus 9 | 3 | species | viruses | viruses | 235455 |
| leishmania garnhami | 4 | species | invertebrates | protozoa | 214612 |
| euphorbia pseudograntii | 6 | species | plants | | 212327 |
| human hepatitis a virus | 64 | no rank | viruses | viruses | 208726 |
| sandfly fever naples virus | 4 | species | viruses | viruses | 206160 |
| adeno-associated virus - 8 | 7 | no rank | viruses | viruses | 202813 |
| adeno-associated virus - 7 | -1 | no rank | viruses | viruses | 202812 |
| aracatuba virus | 1 | no rank | viruses | viruses | 201444 |
| coccidioides posadasii | 14 | species | plants | fungi | 199306 |
| haemophilus aegyptius | 17 | species | bacteria | bacteria | 197575 |
| goatpox virus | 4 | species | viruses | viruses | 186805 |
| sudan ebolavirus | 8 | species | viruses | viruses | 186540 |
| reston ebolavirus | 9 | species | viruses | viruses | 186539 |
| zaire ebolavirus | 20 | species | viruses | viruses | 186538 |
| phakopsora pachyrhizi | 32 | species | plants | fungi | 170000 |
| fusarium solani | 73 | species | plants | fungi | 169388 |
| human metapneumovirus | 63 | species | viruses | viruses | 162145 |
| elephantpox virus | -1 | no rank | viruses | viruses | 160797 |
| skunkpox virus | 1 | species | viruses | viruses | 160796 |
| leishmania mexicana venezuelensis | 6 | subspecies | invertebrates | protozoa | 155283 |
| menangle virus | 12 | species | viruses | viruses | 152219 |
| histoplasma capsulatum var. duboisii | 13 | varietas | plants | | 149546 |
| salmonella enterica subsp. enterica serovar enteritidis | 87 | no rank | bacteria | bacteria | 149539 |
| rhinovirus b | 8 | species | viruses | viruses | 147712 |
| rhinovirus a | 7 | species | viruses | viruses | 147711 |
| nectria haematococca | 50 | species | plants | fungi | 140110 |
| castelo dos sonhos virus | 1 | no rank | viruses | viruses | 139033 |
| araraquara virus | 5 | no rank | viruses | viruses | 139032 |
| enterovirus d | 5 | species | viruses | viruses | 138951 |
| enterovirus c | 118 | species | viruses | viruses | 138950 |
| enterovirus b | 16 | species | viruses | viruses | 138949 |
| enterovirus a | 12 | species | viruses | viruses | 138948 |
| human mastadenovirus d | 5 | species | viruses | viruses | 130310 |
| human mastadenovirus f | 1 | species | viruses | viruses | 130309 |
| human mastadenovirus e | 2 | species | viruses | viruses | 130308 |
| human mastadenovirus c | 5 | species | viruses | viruses | 129951 |
| human mastadenovirus a | 1 | species | viruses | viruses | 129875 |
| xanthomonas oryzae pv. oryzicola | 12 | no rank | bacteria | bacteria | 129394 |
| cantagalo virus | 5 | no rank | viruses | viruses | 124313 |
| nipah virus | 51 | species | viruses | viruses | 121791 |
| oropouche virus | 11 | species | viruses | viruses | 118655 |
| ustilago tritici | 9 | species | plants | fungi | 117174 |
| phyllobates terribilis | 2 | species | vertebrates | | 111132 |
| human mastadenovirus b | 3 | species | viruses | viruses | 108098 |
| acinetobacter calcoaceticus subsp. anitratus | 23 | subspecies | bacteria | bacteria | 107673 |
| ralstonia mannitolilytica | 9 | species | bacteria | bacteria | 105219 |
| soil-borne cereal mosaic virus | 8 | species | viruses | viruses | 100887 |
| northern cereal mosaic virus | 4 | species | viruses | viruses | 100880 |
| epizootic haematopoietic necrosis virus | 19 | species | viruses | viruses | 100217 |
| claviceps sorghi | 5 | species | plants | fungi | 96774 |
| sapporo virus | 16 | species | viruses | viruses | 95342 |
| leishmania colombiensis | 5 | species | invertebrates | protozoa | 93413 |
| australian bat lyssavirus | 15 | species | viruses | viruses | 90961 |
| salmonella enterica subsp. enterica serovar typhimurium | 77 | no rank | bacteria | bacteria | 90371 |
| salmonella enterica subsp. enterica serovar typhi | 85 | no rank | bacteria | bacteria | 90370 |
| cyclospora cayetanensis | 30 | species | invertebrates | protozoa | 88456 |
| xanthomonas citri subsp. malvacearum | 22 | subspecies | bacteria | bacteria | 86040 |
| adeno-associated virus - 1 | 14 | species | viruses | viruses | 85106 |
| chlamydia pneumoniae | 143 | species | bacteria | bacteria | 83558 |
| chlamydia psittaci | 63 | species | bacteria | bacteria | 83554 |
| parachlamydia acanthamoebae | 20 | species | bacteria | bacteria | 83552 |
| chinese wheat mosaic virus | 4 | species | viruses | viruses | 83544 |
| adeno-associated virus - 5 | 2 | species | viruses | viruses | 82300 |
| streptococcus viridans | 35 | species | bacteria | bacteria | 78535 |
| banna virus | 8 | species | viruses | viruses | 77763 |
| wheat yellow mosaic virus | 8 | species | viruses | viruses | 75746 |
| pyrodinium bahamense | 16 | species | plants | protozoa | 73915 |
| akabane virus | 21 | species | viruses | viruses | 70566 |
| oran virus | -3 | no rank | viruses | viruses | 69247 |
| lechiguanas virus | 1 | no rank | viruses | viruses | 69245 |
| hu39694 virus | -3 | no rank | viruses | viruses | 69244 |
| bermejo virus | 1 | no rank | viruses | viruses | 69243 |
| adeno-associated virus 3b | -1 | no rank | viruses | viruses | 68742 |
| adeno-associated virus - 6 | 8 | no rank | viruses | viruses | 68558 |
| bean 58058 virus | 2 | no rank | viruses | viruses | 67082 |
| balamuthia mandrillaris | 27 | species | invertebrates | protozoa | 66527 |
| rhizopus oryzae | 86 | species | plants | fungi | 64495 |
| russian spring-summer encephalitis virus | 7 | species | viruses | viruses | 64316 |
| xanthomonas oryzae pv. oryzae | 48 | no rank | bacteria | bacteria | 64187 |
| hendra virus | 43 | species | viruses | viruses | 63330 |
| lumpy skin disease virus | 16 | species | viruses | viruses | 59509 |
| encephalitozoon intestinalis | 43 | species | plants | fungi | 58839 |
| adeno-associated virus - 4 | 4 | species | viruses | viruses | 57579 |
| salmonella bongori | 18 | species | bacteria | bacteria | 54736 |
| salmonella enterica subsp. enterica serovar paratyphi a | 22 | no rank | bacteria | bacteria | 54388 |
| gb virus c | 69 | species | viruses | viruses | 54290 |
| colorado tick fever virus | 17 | species | viruses | viruses | 46839 |
| adeno-associated virus - 3 | 2 | species | viruses | viruses | 46350 |