| pseudomonas savastanoi pv. glycinea | 35 | no rank | bacteria | bacteria | 318 |
| adeno-associated virus 2h | -1 | no rank | viruses | viruses | 10805 |
| dengue virus 1 | 29 | no rank | viruses | viruses | 11053 |
| dengue virus 2 | 61 | no rank | viruses | viruses | 11060 |
| dengue virus 3 | 26 | no rank | viruses | viruses | 11069 |
| dengue virus 4 | 27 | no rank | viruses | viruses | 11070 |
| tick-borne encephalitis virus (strain sofjin) | -1 | no rank | viruses | viruses | 11087 |
| kumlinge virus | 2 | no rank | viruses | viruses | 11092 |
| la crosse virus | 40 | no rank | viruses | viruses | 11577 |
| human t-lymphotropic virus 1 | 137 | no rank | viruses | viruses | 11908 |
| human t-lymphotropic virus 2 | 60 | no rank | viruses | viruses | 11909 |
| coxsackievirus a9 | 36 | no rank | viruses | viruses | 12067 |
| swine vesicular disease virus | 23 | no rank | viruses | viruses | 12075 |
| coxsackievirus a24 | 14 | no rank | viruses | viruses | 12089 |
| enterovirus d70 | 24 | no rank | viruses | viruses | 12090 |
| human coronavirus oc43 | 29 | no rank | viruses | viruses | 31631 |
| buffalopox virus | 7 | no rank | viruses | viruses | 32605 |
| rabbitpox virus | 31 | no rank | viruses | viruses | 32606 |
| california encephalitis virus | 28 | no rank | viruses | viruses | 35305 |
| enterovirus a71 | 47 | no rank | viruses | viruses | 39054 |
| coxsackievirus a7 | 4 | no rank | viruses | viruses | 42787 |
| salmonella enterica subsp. enterica serovar paratyphi a | 22 | no rank | bacteria | bacteria | 54388 |
| xanthomonas oryzae pv. oryzae | 48 | no rank | bacteria | bacteria | 64187 |
| bean 58058 virus | 2 | no rank | viruses | viruses | 67082 |
| adeno-associated virus - 6 | 8 | no rank | viruses | viruses | 68558 |
| adeno-associated virus 3b | -1 | no rank | viruses | viruses | 68742 |
| bermejo virus | 1 | no rank | viruses | viruses | 69243 |
| hu39694 virus | -3 | no rank | viruses | viruses | 69244 |
| lechiguanas virus | 1 | no rank | viruses | viruses | 69245 |
| oran virus | -3 | no rank | viruses | viruses | 69247 |
| salmonella enterica subsp. enterica serovar typhi | 85 | no rank | bacteria | bacteria | 90370 |
| salmonella enterica subsp. enterica serovar typhimurium | 77 | no rank | bacteria | bacteria | 90371 |
| cantagalo virus | 5 | no rank | viruses | viruses | 124313 |
| xanthomonas oryzae pv. oryzicola | 12 | no rank | bacteria | bacteria | 129394 |
| araraquara virus | 5 | no rank | viruses | viruses | 139032 |
| castelo dos sonhos virus | 1 | no rank | viruses | viruses | 139033 |
| salmonella enterica subsp. enterica serovar enteritidis | 87 | no rank | bacteria | bacteria | 149539 |
| elephantpox virus | -1 | no rank | viruses | viruses | 160797 |
| aracatuba virus | 1 | no rank | viruses | viruses | 201444 |
| adeno-associated virus - 7 | -1 | no rank | viruses | viruses | 202812 |
| adeno-associated virus - 8 | 7 | no rank | viruses | viruses | 202813 |
| human hepatitis a virus | 64 | no rank | viruses | viruses | 208726 |
| dolphin poxvirus 1 | -1 | no rank | viruses | viruses | 256962 |
| span 232 virus | -1 | no rank | viruses | viruses | 262397 |
| enterococcus casseliflavus ec30 | -1 | no rank | bacteria | bacteria | 565652 |
| borreliella burgdorferi | 144 | species | bacteria | bacteria | 139 |
| borrelia hermsii | 44 | species | bacteria | bacteria | 140 |
| borrelia turicatae | 21 | species | bacteria | bacteria | 142 |
| treponema pallidum | 87 | species | bacteria | bacteria | 160 |
| leptospira interrogans | 49 | species | bacteria | bacteria | 173 |
| brucella abortus | 76 | species | bacteria | bacteria | 235 |
| elizabethkingia meningoseptica | 44 | species | bacteria | bacteria | 238 |
| francisella tularensis | 74 | species | bacteria | bacteria | 263 |
| pseudomonas aeruginosa | 243 | species | bacteria | bacteria | 287 |
| burkholderia cepacia | 107 | species | bacteria | bacteria | 292 |
| pseudomonas fluorescens | 122 | species | bacteria | bacteria | 294 |
| pseudomonas putida | 133 | species | bacteria | bacteria | 303 |
| ralstonia solanacearum | 79 | species | bacteria | bacteria | 305 |
| pseudomonas stutzeri | 76 | species | bacteria | bacteria | 316 |
| ralstonia pickettii | 44 | species | bacteria | bacteria | 329 |
| agrobacterium tumefaciens | 155 | species | bacteria | bacteria | 358 |
| legionella pneumophila | 133 | species | bacteria | bacteria | 446 |
| legionella longbeachae | 16 | species | bacteria | bacteria | 450 |
| tatlockia micdadei | 25 | species | bacteria | bacteria | 451 |
| acinetobacter baumannii | 88 | species | bacteria | bacteria | 470 |
| acinetobacter calcoaceticus | 77 | species | bacteria | bacteria | 471 |
| moraxella catarrhalis | 87 | species | bacteria | bacteria | 480 |
| neisseria gonorrhoeae | 136 | species | bacteria | bacteria | 485 |
| neisseria meningitidis | 130 | species | bacteria | bacteria | 487 |
| bordetella pertussis | 122 | species | bacteria | bacteria | 520 |
| eikenella corrodens | 47 | species | bacteria | bacteria | 539 |
| citrobacter freundii | 70 | species | bacteria | bacteria | 546 |
| [enterobacter] aerogenes | 75 | species | bacteria | bacteria | 548 |
| enterobacter cloacae | 90 | species | bacteria | bacteria | 550 |
| escherichia coli | 524 | species | bacteria | bacteria | 562 |
| klebsiella oxytoca | 66 | species | bacteria | bacteria | 571 |
| klebsiella pneumoniae | 146 | species | bacteria | bacteria | 573 |
| morganella morganii | 46 | species | bacteria | bacteria | 582 |
| proteus mirabilis | 80 | species | bacteria | bacteria | 584 |
| proteus vulgaris | 53 | species | bacteria | bacteria | 585 |
| providencia stuartii | 41 | species | bacteria | bacteria | 588 |
| serratia marcescens | 100 | species | bacteria | bacteria | 615 |
| shigella boydii | 21 | species | bacteria | bacteria | 621 |
| shigella dysenteriae | 80 | species | bacteria | bacteria | 622 |
| shigella flexneri | 142 | species | bacteria | bacteria | 623 |
| shigella sonnei | 53 | species | bacteria | bacteria | 624 |
| yersinia enterocolitica | 126 | species | bacteria | bacteria | 630 |
| yersinia pestis | 105 | species | bacteria | bacteria | 632 |
| yersinia pseudotuberculosis | 99 | species | bacteria | bacteria | 633 |
| edwardsiella tarda | 37 | species | bacteria | bacteria | 636 |
| vibrio cholerae | 145 | species | bacteria | bacteria | 666 |
| vibrio parahaemolyticus | 74 | species | bacteria | bacteria | 670 |
| vibrio vulnificus | 73 | species | bacteria | bacteria | 672 |
| vibrio mimicus | 28 | species | bacteria | bacteria | 674 |
| haemophilus influenzae | 148 | species | bacteria | bacteria | 727 |
| haemophilus parainfluenzae | 30 | species | bacteria | bacteria | 729 |
| [haemophilus] ducreyi | 57 | species | bacteria | bacteria | 730 |
| aggregatibacter aphrophilus | 19 | species | bacteria | bacteria | 732 |
| haemophilus parahaemolyticus | 24 | species | bacteria | bacteria | 735 |
| pasteurella multocida | 65 | species | bacteria | bacteria | 747 |