| west nile virus | 97 | species | viruses | viruses | 11082 |
| powassan virus | 11 | species | viruses | viruses | 11083 |
| tick-borne encephalitis virus | 55 | species | viruses | viruses | 11084 |
| louping ill virus | 14 | species | viruses | viruses | 11086 |
| tick-borne encephalitis virus (strain sofjin) | -1 | no rank | viruses | viruses | 11087 |
| yellow fever virus | 83 | species | viruses | viruses | 11089 |
| kumlinge virus | 2 | no rank | viruses | viruses | 11092 |
| classical swine fever virus | 84 | species | viruses | viruses | 11096 |
| hepatitis c virus | 289 | species | viruses | viruses | 11103 |
| human coronavirus 229e | 39 | species | viruses | viruses | 11137 |
| mumps virus | 61 | species | viruses | viruses | 11161 |
| newcastle disease virus | 93 | species | viruses | viruses | 11176 |
| human parainfluenza virus 3 | 51 | species | viruses | viruses | 11216 |
| measles virus | 119 | species | viruses | viruses | 11234 |
| rinderpest virus | 39 | species | viruses | viruses | 11241 |
| human respiratory syncytial virus | 66 | species | viruses | viruses | 11250 |
| marburg marburgvirus | 17 | species | viruses | viruses | 11269 |
| vesicular stomatitis virus | 177 | species | viruses | viruses | 11276 |
| rabies virus | 96 | species | viruses | viruses | 11292 |
| unidentified influenza virus | 240 | species | viruses | viruses | 11309 |
| influenza a virus | 135 | species | viruses | viruses | 11320 |
| influenza b virus | 57 | species | viruses | viruses | 11520 |
| influenza c virus | 48 | species | viruses | viruses | 11552 |
| la crosse virus | 40 | no rank | viruses | viruses | 11577 |
| rift valley fever virus | 41 | species | viruses | viruses | 11588 |
| hantaan virus | 61 | species | viruses | viruses | 11599 |
| seoul virus | 27 | species | viruses | viruses | 11608 |
| tomato spotted wilt virus | 48 | species | viruses | viruses | 11613 |
| junin mammarenavirus | 31 | species | viruses | viruses | 11619 |
| lassa mammarenavirus | 41 | species | viruses | viruses | 11620 |
| lymphocytic choriomeningitis mammarenavirus | 148 | species | viruses | viruses | 11623 |
| machupo mammarenavirus | 18 | species | viruses | viruses | 11628 |
| human immunodeficiency virus 1 | 410 | species | viruses | viruses | 11676 |
| human immunodeficiency virus 2 | 399 | species | viruses | viruses | 11709 |
| human t-lymphotropic virus 1 | 137 | no rank | viruses | viruses | 11908 |
| human t-lymphotropic virus 2 | 60 | no rank | viruses | viruses | 11909 |
| rabbit hemorrhagic disease virus | 37 | species | viruses | viruses | 11976 |
| norwalk virus | 73 | species | viruses | viruses | 11983 |
| barley yellow dwarf virus | 47 | species | viruses | viruses | 12037 |
| soybean dwarf virus | 12 | species | viruses | viruses | 12049 |
| coxsackievirus a9 | 36 | no rank | viruses | viruses | 12067 |
| swine vesicular disease virus | 23 | no rank | viruses | viruses | 12075 |
| coxsackievirus a24 | 14 | no rank | viruses | viruses | 12089 |
| enterovirus d70 | 24 | no rank | viruses | viruses | 12090 |
| foot-and-mouth disease virus | 89 | species | viruses | viruses | 12110 |
| southern bean mosaic virus | 29 | species | viruses | viruses | 12139 |
| potato virus x | 71 | species | viruses | viruses | 12183 |
| maize dwarf mosaic virus | 24 | species | viruses | viruses | 12203 |
| plum pox virus | 57 | species | viruses | viruses | 12211 |
| potato virus y | 52 | species | viruses | viruses | 12216 |
| soybean mosaic virus | 32 | species | viruses | viruses | 12222 |
| sugarcane mosaic virus | 23 | species | viruses | viruses | 12224 |
| zucchini yellow mosaic virus | 32 | species | viruses | viruses | 12232 |
| barley stripe mosaic virus | 32 | species | viruses | viruses | 12327 |
| maize stripe virus | 18 | species | viruses | viruses | 12330 |
| rice stripe virus | 118 | species | viruses | viruses | 12331 |
| borna disease virus | 65 | species | viruses | viruses | 12455 |
| barley yellow mosaic virus | 25 | species | viruses | viruses | 12465 |
| barley mild mosaic virus | 19 | species | viruses | viruses | 12466 |
| dobrava-belgrade virus | 23 | species | viruses | viruses | 12506 |
| omsk hemorrhagic fever virus | 8 | species | viruses | viruses | 12542 |
| ectromelia virus | 47 | species | viruses | viruses | 12643 |
| human parainfluenza virus 1 | 34 | species | viruses | viruses | 12730 |
| soil-borne wheat mosaic virus | 21 | species | viruses | viruses | 28375 |
| camelpox virus | 21 | species | viruses | viruses | 28873 |
| volepox virus | 1 | species | viruses | viruses | 28874 |
| rotavirus a | 58 | species | viruses | viruses | 28875 |
| rotavirus b | 22 | species | viruses | viruses | 28876 |
| cacao swollen shoot virus | 10 | species | viruses | viruses | 31559 |
| peste-des-petits-ruminants virus | 32 | species | viruses | viruses | 31604 |
| human coronavirus oc43 | 29 | no rank | viruses | viruses | 31631 |
| rice yellow mottle virus | 23 | species | viruses | viruses | 31744 |
| buffalopox virus | 7 | no rank | viruses | viruses | 32605 |
| rabbitpox virus | 31 | no rank | viruses | viruses | 32606 |
| kyasanur forest disease virus | 13 | species | viruses | viruses | 33743 |
| alcelaphine herpesvirus 1 | 26 | species | viruses | viruses | 35252 |
| california encephalitis virus | 28 | no rank | viruses | viruses | 35305 |
| rotavirus c | 33 | species | viruses | viruses | 36427 |
| chikungunya virus | 39 | species | viruses | viruses | 37124 |
| enterovirus a71 | 47 | no rank | viruses | viruses | 39054 |
| african horse sickness virus | 28 | species | viruses | viruses | 40050 |
| bluetongue virus | 64 | species | viruses | viruses | 40051 |
| rice ragged stunt virus | 15 | species | viruses | viruses | 42475 |
| coxsackievirus a7 | 4 | no rank | viruses | viruses | 42787 |
| new york virus | 7 | species | viruses | viruses | 44755 |
| guanarito mammarenavirus | 15 | species | viruses | viruses | 45219 |
| flexal mammarenavirus | -1 | species | viruses | viruses | 45220 |
| sabia mammarenavirus | 9 | species | viruses | viruses | 45709 |
| adeno-associated virus - 3 | 2 | species | viruses | viruses | 46350 |
| colorado tick fever virus | 17 | species | viruses | viruses | 46839 |
| gb virus c | 69 | species | viruses | viruses | 54290 |
| adeno-associated virus - 4 | 4 | species | viruses | viruses | 57579 |
| lumpy skin disease virus | 16 | species | viruses | viruses | 59509 |
| hendra virus | 43 | species | viruses | viruses | 63330 |
| russian spring-summer encephalitis virus | 7 | species | viruses | viruses | 64316 |
| bean 58058 virus | 2 | no rank | viruses | viruses | 67082 |
| adeno-associated virus - 6 | 8 | no rank | viruses | viruses | 68558 |
| adeno-associated virus 3b | -1 | no rank | viruses | viruses | 68742 |
| bermejo virus | 1 | no rank | viruses | viruses | 69243 |
| hu39694 virus | -3 | no rank | viruses | viruses | 69244 |