| campylobacter insulaenigrae | 3 | species | bacteria | bacteria | 260714 |
| trypanosoma rabinowitschae | -3 | species | invertebrates | protozoa | 267967 |
| angiostrongylus dujardini | 2 | species | invertebrates | helminths | 274538 |
| besnoitia tarandi | 3 | species | invertebrates | protozoa | 279368 |
| cystoisospora ohioensis | 8 | species | invertebrates | protozoa | 279926 |
| cyrnea seurati | 1 | species | invertebrates | helminths | 291933 |
| cyrnea mansioni | -3 | species | invertebrates | helminths | 291938 |
| hepatozoon felis | 2 | species | invertebrates | protozoa | 294745 |
| pigeon coronavirus | 1 | no rank | viruses | viruses | 300189 |
| rabbit vesivirus | 2 | species | viruses | viruses | 303317 |
| eimeria wyomingensis | 3 | species | invertebrates | protozoa | 310760 |
| raillietiella | 13 | genus | invertebrates | | 311330 |
| toxocara malaysiensis | 4 | species | invertebrates | helminths | 321166 |
| j-virus | 17 | species | viruses | viruses | 322067 |
| menopon gallinae | 4 | species | invertebrates | | 328185 |
| dipetalonema dracunculoides | 6 | species | invertebrates | helminths | 328821 |
| canine minute virus | 13 | species | viruses | viruses | 329639 |
| human bocavirus | 39 | species | viruses | viruses | 329641 |
| mouse adeno-associated virus 1 | -3 | species | viruses | viruses | 341226 |
| human mammary tumor virus | 8 | species | viruses | viruses | 341730 |
| entamoeba equi | 1 | species | invertebrates | protozoa | 359304 |
| entamoeba suis | 2 | species | invertebrates | protozoa | 359305 |
| porcine type-c oncovirus | -3 | species | viruses | viruses | 369960 |
| aureimonas altamirensis | 4 | species | bacteria | bacteria | 370622 |
| haemoproteus danilewskyii | -3 | species | invertebrates | protozoa | 379419 |
| ovine mastadenovirus b | -3 | species | viruses | viruses | 389483 |
| small anellovirus | 5 | species | viruses | viruses | 393049 |
| leucocytozoon schoutedeni | 2 | species | invertebrates | protozoa | 393989 |
| cylicocyclus leptostomum | 1 | species | invertebrates | helminths | 401682 |
| sarcocystis hardangeri | 4 | species | invertebrates | protozoa | 425661 |
| sarcocystis rangiferi | 3 | species | invertebrates | protozoa | 425662 |
| sarcocystis tarandi | 2 | species | invertebrates | protozoa | 425663 |
| flavobacterium lindanitolerans | 1 | species | bacteria | bacteria | 428988 |
| torque teno midi virus | 4 | species | viruses | viruses | 432261 |
| saffold virus | 6 | no rank | viruses | viruses | 434309 |
| tetrameres fissipina | -3 | species | invertebrates | helminths | 435743 |
| xmrv | 21 | no rank | viruses | viruses | 438045 |
| cyrnea leptoptera | 1 | species | invertebrates | helminths | 455376 |
| mycoplasma mucosicanis | -3 | species | bacteria | bacteria | 458208 |
| porcine picobirnavirus 1 | -3 | species | viruses | viruses | 464983 |
| polyplax serrata | 10 | species | invertebrates | | 468196 |
| polyplax spinulosa | 6 | species | invertebrates | | 468197 |
| cyathostomum tetracanthum | 4 | species | invertebrates | helminths | 475190 |
| mycobacterium riyadhense | 1 | species | bacteria | bacteria | 486698 |
| cryptosporidium fragile | 1 | species | invertebrates | protozoa | 487910 |
| dietzia timorensis | 1 | species | bacteria | bacteria | 499555 |
| sarcocystis ovalis | 2 | species | invertebrates | protozoa | 501322 |
| human tmev-like cardiovirus | 2 | no rank | viruses | viruses | 511755 |
| haematopinus suis | 10 | species | invertebrates | | 511927 |
| haematopinus tuberculatus | 2 | species | invertebrates | | 511928 |
| linognathus africanus | 3 | species | invertebrates | | 511940 |
| linognathus ovillus | 2 | species | invertebrates | | 511941 |
| cryptosporidium ryanae | 4 | species | invertebrates | protozoa | 515981 |
| dracunculus lutrae | 1 | species | invertebrates | helminths | 520087 |
| chicken astrovirus 2 | -3 | species | viruses | viruses | 544801 |
| chicken astrovirus 1 | -3 | no rank | viruses | viruses | 544802 |
| protostrongylus boughtoni | 7 | species | invertebrates | helminths | 544912 |
| protostrongylus pulmonalis | 2 | species | invertebrates | helminths | 544913 |
| protostrongylus rupicaprae | 1 | species | invertebrates | helminths | 544914 |
| entamoeba muris | 5 | species | invertebrates | protozoa | 545931 |
| propionibacterium acidifaciens | 1 | species | bacteria | bacteria | 556499 |
| morellia aenescens | -3 | species | invertebrates | fly | 559657 |
| morellia hortorum | -3 | species | invertebrates | fly | 559658 |
| morellia simplex | -3 | species | invertebrates | fly | 559659 |
| cryptosporidium fayeri | 2 | species | invertebrates | protozoa | 582425 |
| human cosavirus a | -3 | no rank | viruses | viruses | 586419 |
| corynebacterium pyruviciproducens | 1 | species | bacteria | bacteria | 598660 |
| neisseria shayeganii | 1 | species | bacteria | bacteria | 607712 |
| human klassevirus 1 | 1 | species | viruses | viruses | 655603 |
| hmo astrovirus a | -3 | species | viruses | viruses | 682382 |
| parafilaroides gymnurus | 4 | species | invertebrates | helminths | 690305 |
| sarcocystis hjorti | 2 | species | invertebrates | protozoa | 703404 |
| eimeria lamae | 1 | species | invertebrates | protozoa | 703585 |
| ophionyssus natricis | 6 | species | invertebrates | | 704026 |
| arcobacter trophiarum | 1 | species | bacteria | bacteria | 708186 |
| entamoeba bovis | 2 | species | invertebrates | protozoa | 715123 |
| cyclovirus ng12 | -3 | species | viruses | viruses | 742922 |
| human stool-associated circular virus ng13 | -3 | species | viruses | viruses | 743300 |
| eimeria macusaniensis | 6 | species | invertebrates | protozoa | 745318 |
| dinobdella ferox | 2 | species | invertebrates | | 755736 |
| heterodoxus spiniger | 3 | species | invertebrates | | 762516 |
| brachyspira rattus | -3 | species | bacteria | bacteria | 797076 |
| brachyspira muridarum | -3 | species | bacteria | bacteria | 797079 |
| brachyspira muris | -3 | species | bacteria | bacteria | 797080 |
| tetnovirus 1 | 1 | species | viruses | viruses | 870711 |
| mlv-related virus cfs | -3 | no rank | viruses | viruses | 878322 |
| necropsobacter rosorum | -3 | species | bacteria | bacteria | 908285 |
| escherichia coli p12b | 1 | no rank | bacteria | bacteria | 910348 |
| nematodirella cameli | 1 | species | invertebrates | helminths | 911091 |
| human polyomavirus 9 | 1 | species | viruses | viruses | 943908 |
| okadaella gastrococcus | 1 | species | bacteria | bacteria | 948105 |
| protospirura | 9 | genus | | | 1080593 |
| uncinaria lucasi | 8 | species | | helminths | 1080936 |
| khalilia sameera | -3 | species | | helminths | 1115655 |
| heterophyopsis continua | 3 | species | | helminths | 1193295 |
| placobdella rugosa | -3 | species | | | 1258696 |
| spiculocaulus leuckarti | -3 | species | | helminths | 1418103 |
| mastophorus muris | 7 | species | | helminths | 1499391 |
| echinorhynchus salmonis | 8 | species | | helminths | 1597786 |
| trichuris serrata | 1 | species | | helminths | 1610522 |