| ollulanus tricuspis | 9 | species | | helminths | 1589277 |
| taenia crocutae | 1 | species | | helminths | 1453888 |
| hydatigera parva | 4 | species | invertebrates | helminths | 1434711 |
| neocatenulostroma abietis | 7 | species | plants | fungi | 1434218 |
| eupenidiella venezuelensis | -3 | species | plants | fungi | 1431930 |
| centrocestus caninus | 2 | species | | helminths | 1347780 |
| taenia omissa | 2 | species | | helminths | 1256673 |
| marshallagia mongolica | 1 | species | | helminths | 1213749 |
| thysaniezia giardi | 1 | species | | helminths | 1141746 |
| paraspidodera uncinata | 1 | species | | helminths | 1097588 |
| sarcocystis fayeri | 5 | species | | protozoa | 1073925 |
| ascaridia numidae | 2 | species | | helminths | 1004783 |
| mycoplasma parvum | 2 | species | bacteria | bacteria | 984991 |
| dictyocaulus arnfieldi | 8 | species | invertebrates | helminths | 928216 |
| goniodes colchici | 2 | species | invertebrates | | 915406 |
| goniocotes chrysocephalus | 1 | species | invertebrates | | 915405 |
| cladosporium velox | -3 | species | plants | fungi | 891392 |
| calhevirus 1 | 12 | species | viruses | viruses | 870710 |
| weeksella virosa dsm 16922 | -3 | no rank | bacteria | bacteria | 865938 |
| bifidobacteriaceae bacterium sp2-iso-ab41 | -3 | species | bacteria | bacteria | 865753 |
| caldanaerobius | 1 | genus | bacteria | | 862261 |
| eimeria gallopavonis | 2 | species | invertebrates | protozoa | 857749 |
| sarcocystis rileyi | 2 | species | invertebrates | protozoa | 805401 |
| fusarium cf. solani hpf3 | -3 | species | plants | fungi | 765550 |
| aspergillus fumigatus | 109 | species | plants | fungi | 746128 |
| roseburia intestinalis xb6b4 | 1 | no rank | bacteria | bacteria | 718255 |
| hyphopichia burtonii | 6 | species | plants | fungi | 717740 |
| trypanosoma melophagium | 4 | species | invertebrates | protozoa | 715481 |
| staphylococcus lugdunensis hku09-01 | 1 | no rank | bacteria | bacteria | 698737 |
| haloarchaeon enrichment culture clone b1a-c1 | -3 | species | environmental samples | | 696624 |
| bacteroides rodentium | 1 | species | bacteria | bacteria | 691816 |
| lichtheimia ramosa | 2 | species | plants | fungi | 688394 |
| cycloposthium bipalmatum | 1 | species | invertebrates | protozoa | 686996 |
| blepharocorys uncinata | -3 | species | invertebrates | protozoa | 686991 |
| torque teno like mini virus isfahan | -3 | species | viruses | viruses | 662948 |
| chelonobacter | 1 | genus | bacteria | | 658623 |
| acidithiomicrobium | 1 | genus | bacteria | | 658428 |
| candidatus koribacter | -3 | genus | bacteria | | 658061 |
| schlesneria | 1 | genus | bacteria | | 656899 |
| cohaesibacter | 1 | genus | bacteria | | 655352 |
| wenxinia | 1 | genus | bacteria | | 653686 |
| anaerosporobacter | 1 | genus | bacteria | | 653683 |
| phaselicystis | 1 | genus | bacteria | | 651810 |
| marispirillum | 1 | genus | bacteria | | 651700 |
| paenisporosarcina | 1 | genus | bacteria | | 651660 |
| paraeggerthella | 1 | genus | bacteria | | 651554 |
| haloglycomyces | 1 | genus | bacteria | | 651553 |
| kosmotoga | 1 | genus | bacteria | | 651456 |
| leeia | 1 | genus | bacteria | | 650341 |
| gracilimonas | 1 | genus | bacteria | | 649462 |
| lacibacter | 1 | genus | bacteria | | 649461 |
| filimonas | 1 | genus | bacteria | | 649460 |
| rummeliibacillus | 1 | genus | bacteria | | 648802 |
| solibacillus | 1 | genus | bacteria | | 648800 |
| thermotalea | 1 | genus | bacteria | | 648799 |
| marinactinospora | 1 | genus | bacteria | | 647960 |
| indibacter | 1 | genus | bacteria | | 647744 |
| gordonibacter | 1 | genus | bacteria | | 644652 |
| inhella | 1 | genus | bacteria | | 644355 |
| halanaerobaculum | 1 | genus | bacteria | | 644353 |
| pelagibius | 1 | genus | bacteria | | 643951 |
| ferrithrix | 1 | genus | bacteria | | 643949 |
| marinoscillum | 1 | genus | bacteria | | 643701 |
| afifella | 1 | genus | bacteria | | 643217 |
| pyramidobacter | 2 | genus | bacteria | | 638847 |
| pseudozobellia | 1 | genus | bacteria | | 633413 |
| lacticigenium | 1 | genus | bacteria | | 633405 |
| thalassobium | -3 | genus | bacteria | | 633130 |
| spongiibacter | 1 | genus | bacteria | | 630749 |
| halarsenatibacter | 1 | genus | bacteria | | 630723 |
| sphaerocavum | 3 | genus | bacteria | | 629758 |
| ruania | 2 | genus | bacteria | | 626119 |
| psychrilyobacter | 1 | genus | bacteria | | 623282 |
| maritalea | 1 | genus | bacteria | | 623276 |
| candidatus planktophila | 1 | genus | bacteria | | 622681 |
| roseburia inulinivorans dsm 16841 | 1 | no rank | bacteria | bacteria | 622312 |
| smaragdicoccus | 1 | genus | bacteria | | 613121 |
| aliihoeflea | 1 | genus | bacteria | | 610116 |
| citreimonas | 1 | genus | bacteria | | 608658 |
| zavarzinella | 1 | genus | bacteria | | 600332 |
| tropicibacter | 1 | genus | bacteria | | 599653 |
| tropicimonas | 1 | genus | bacteria | | 599652 |
| bermanella | 1 | genus | bacteria | | 599651 |
| sarcophaga caerulescens | 1 | species | invertebrates | fly | 596942 |
| hydrogenoanaerobacterium | 1 | genus | bacteria | | 596767 |
| sinomonas | 1 | genus | bacteria | | 596707 |
| nitriliruptor | 2 | genus | bacteria | | 596499 |
| sciscionella | 1 | genus | bacteria | | 596495 |
| caldanaerovirga | 1 | genus | bacteria | | 591374 |
| mycobacterium paraseoulense | 1 | species | bacteria | bacteria | 590652 |
| robinsoniella | 1 | genus | bacteria | | 588605 |
| chitiniphilus | 1 | genus | bacteria | | 585890 |
| umezawaea | 1 | genus | bacteria | | 583360 |
| rubidibacter | 1 | genus | bacteria | | 582491 |
| wohlfahrtiimonas | 1 | genus | bacteria | | 582472 |
| amorphus | 13 | genus | bacteria | | 580880 |
| butyricicoccus | 1 | genus | bacteria | | 580596 |
| klugiella | 1 | genus | bacteria | | 580374 |
| enterorhabdus | 1 | genus | bacteria | | 580024 |
| demequina | 2 | genus | bacteria | | 577469 |